View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0077_low_1 (Length: 390)
Name: NF0077_low_1
Description: NF0077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0077_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 68 - 384
Target Start/End: Complemental strand, 43924231 - 43923915
Alignment:
| Q |
68 |
ttgagaaaatagcattgctgaatatcatcccatgtgttagtgtcctttctgtgttgaaaccgccatgtgtcggtgtcggataccataccacacacctttg |
167 |
Q |
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| T |
43924231 |
ttgagaaaatagcattgctgattatgatcacatgtgttagtgtcctttctttgttgaaaccgccatgtgtcggtgtcggataccataccacacacctttg |
43924132 |
T |
|
| Q |
168 |
atcagagatgcgttgatcctaaggtagttcggatcatttataaattccaactaaacataattatcttcattaattgnnnnnnnctctcttaattattagg |
267 |
Q |
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| T |
43924131 |
atcagagatgcgttgatcctaaggtggttcggatcatttataaattccaactaaacataattatcttcattaattgtttttttctctcataattattagg |
43924032 |
T |
|
| Q |
268 |
aatcagagtggcttagggttactttacataaatggttggatgatgaatactgtcctgaggaaacaaatgtggagataagcagagttgctgcaaaatccta |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43924031 |
aatcagagtggcttagggttactttacataaatggttggatgatgaatactgtcctgaggaaacaaatgtggagataagcagagttgctgcaaaatccta |
43923932 |
T |
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| Q |
368 |
ctacaatcctatgatac |
384 |
Q |
| |
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||| ||| || |||||| |
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| T |
43923931 |
ctataattctttgatac |
43923915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43924292 - 43924247
Alignment:
| Q |
1 |
ttagttagcttagactgacgaacggaacaaaggacacgccaacacc |
46 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
43924292 |
ttagttagcttagactgatgaacggaacaaaggacacgcctacacc |
43924247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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