View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0079_low_1 (Length: 916)
Name: NF0079_low_1
Description: NF0079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0079_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 96 - 740
Target Start/End: Original strand, 48541659 - 48542300
Alignment:
| Q |
96 |
agcatgtttccatttcttacaaatagctaaaaagatcctaggaagatgcaagtagctgtagaagtaaagattcttgcttgtattacttgttatgaacaag |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48541659 |
agcatgtttccatttcttacaaatagctaaaaagatcctaggaagatcaaagtagctgtagaagtaaagattcttgcttgtattacttgttatgaacacg |
48541758 |
T |
|
| Q |
196 |
aaatgaaaagtggcatgagaagggaagtagtgtgttttgtaaattgaaacctccataaccattaacaaaacatacaccaagataactagataagactttc |
295 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541759 |
aaatgaaaagtggcatgagaagggaagt---gtgttttgtaaattgaaacctccataaccattaacaaaacatacaccaagataactagataagactttc |
48541855 |
T |
|
| Q |
296 |
caaaatctagtaatctacaataagaaatagcacaacctagctacacatgttgggtgtgcattcagagttttgctgctctttccatatccttcctgttact |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541856 |
caaaatctagtaatctacaataagaaatagcacaacctagctacacatgttgggtgtgcattcagagttttgctgctctttccatatccttcctgttact |
48541955 |
T |
|
| Q |
396 |
cttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatgattaggccgtcatgactatccttcactttcttgtgactat |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541956 |
cttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatgattaggccgtcatgactatccttcactttcttgtgactat |
48542055 |
T |
|
| Q |
496 |
ctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttctaagctgtagctgtagttcttggcgtctctatcatcacccat |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48542056 |
ctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttctaagctgtagctgtagttcttggcgtctctgtcatcacccat |
48542155 |
T |
|
| Q |
596 |
gaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctacatgaac |
695 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542156 |
gaatcgaagaaacgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctacatgaac |
48542255 |
T |
|
| Q |
696 |
caaacaataagagttagtcataacaattcggataagatatcaaaa |
740 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48542256 |
caaacaataagagttagtcataacaatttggataagatatcaaaa |
48542300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 733 - 916
Target Start/End: Original strand, 48542488 - 48542671
Alignment:
| Q |
733 |
tatcaaaaatctgaattcatcagttgctaaataactaaaccgatcaataaatagcaaattttgttaagagtcataattaccgttagcatccaagtagcat |
832 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48542488 |
tatcaaaaatctgaattcatcagttgctaaataactaaaccgatcaataaatagcaaattttgttaagggtcataattaccgttagcatccaagtagcat |
48542587 |
T |
|
| Q |
833 |
tttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatccctta |
916 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542588 |
tttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatccctta |
48542671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 356 - 688
Target Start/End: Complemental strand, 9837456 - 9837124
Alignment:
| Q |
356 |
ttcagagttttgctgctctttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatg |
455 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||||||||| || |||| |||||| ||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
9837456 |
ttcagggttttgctgttctttccatatccttcctgttactcgtaacttcagctctttcctatctccaccagagaagaaaagtgccatgttccggtatata |
9837357 |
T |
|
| Q |
456 |
attaggccgtcatgactatccttcactttcttgtgactatctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttcta |
555 |
Q |
| |
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|| ||||| |||||||| || | ||||||||||| || ||||||||||| |||||||| || || | ||||||| ||||| | ||||| || || | |
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| T |
9837356 |
atgaggccatcatgactgtctctaactttcttgtggctgtctctaatgctccttggactgccctcgtagattagtttgcgtccgctccctcctacctcaa |
9837257 |
T |
|
| Q |
556 |
agctgtagctgtagttcttggcgtctctatcatcacccatgaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggag |
655 |
Q |
| |
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|||||||||||| || |||| ||||| ||||| |||||||| || ||||||||||||||||| || | | || |||| || || |||||||||||||| |
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| T |
9837256 |
gactgtagctgtagctcctggcatctctttcatctcccatgaaacggagaaatgccatgtaaactggagccattccaagttgaaaggcttcaaaatggag |
9837157 |
T |
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| Q |
656 |
acaaaaatattgaccaaaacaatggaaaaccta |
688 |
Q |
| |
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||| |||||||| |||||||| ||||| ||||| |
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| T |
9837156 |
acagaaatattgtccaaaacagtggaagaccta |
9837124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 809 - 916
Target Start/End: Complemental strand, 9836646 - 9836539
Alignment:
| Q |
809 |
ttaccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtc |
908 |
Q |
| |
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|||| |||| |||||| |||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |
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| T |
9836646 |
ttactgttaacatccatgtagcattttctacttccatgggatttgacttgacataacgatgattaaaagtgcatccagaatgcatatcaactctgtggtc |
9836547 |
T |
|
| Q |
909 |
atccctta |
916 |
Q |
| |
|
||||||| |
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| T |
9836546 |
gtccctta |
9836539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 810 - 880
Target Start/End: Complemental strand, 14232600 - 14232530
Alignment:
| Q |
810 |
taccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgc |
880 |
Q |
| |
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|||||||| |||||| || |||||||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
14232600 |
taccgttaacatccatgttgcattttcaacatcttgaggatttgatttgacataacgatggttaaaagtgc |
14232530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 810 - 899
Target Start/End: Original strand, 5037359 - 5037448
Alignment:
| Q |
810 |
taccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaac |
899 |
Q |
| |
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|||||||| |||||| || |||||||| ||||| ||||||||||||||| |||||||| ||||||||||| ||| |||||| ||||| |
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|
| T |
5037359 |
taccgttaacatccatgtggcattttcaacttcttgaggatttgatttgacgtaacgatgattaaaagtgcagccactatgcatgtcaac |
5037448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 442
Target Start/End: Original strand, 41632791 - 41632858
Alignment:
| Q |
375 |
ttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccat |
442 |
Q |
| |
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|||||||| ||||| || ||||| ||||||||||| || ||||||||||| ||||| || |||||||| |
|
|
| T |
41632791 |
ttccatattcttccggtgactctaagtttcaactccttcctatccccaccagagaaaaatagtgccat |
41632858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 591 - 689
Target Start/End: Original strand, 41633007 - 41633105
Alignment:
| Q |
591 |
cccatgaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctac |
689 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| | | | ||||||| || ||||| ||||| || || |||||||| ||||||||||| || |||||| |
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|
| T |
41633007 |
cccataaaccgaaggaatgccatgtaaacaggggccatgccaagctgaaaagcttcgaaatgaaggcagaaatattggccaaaacaatgaaatacctac |
41633105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 809 - 885
Target Start/End: Complemental strand, 23403633 - 23403557
Alignment:
| Q |
809 |
ttaccgttagcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatcca |
885 |
Q |
| |
|
|||| ||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
23403633 |
ttacggttagcatccatgtggcattttcaacttcatgtggatttgatttgacatatcgatggttaaaggtgaatcca |
23403557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 817 - 884
Target Start/End: Complemental strand, 736870 - 736803
Alignment:
| Q |
817 |
agcatccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatcc |
884 |
Q |
| |
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||||||||||||||||| |||||||| |||||||| || |||||||||||||| || |||||||| |
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| T |
736870 |
agcatccaagtagcattctctacttcacgcggatttgacttcacataacgatggttgaatgtgcatcc |
736803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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