View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0079_low_2 (Length: 471)

Name: NF0079_low_2
Description: NF0079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0079_low_2
NF0079_low_2
[»] chr2 (3 HSPs)
chr2 (24-261)||(28173413-28173643)
chr2 (24-295)||(11951637-11951900)
chr2 (153-296)||(2743968-2744109)
[»] chr4 (2 HSPs)
chr4 (24-296)||(2464463-2464729)
chr4 (153-280)||(6736510-6736629)
[»] scaffold0312 (1 HSPs)
scaffold0312 (24-295)||(18990-19248)
[»] chr1 (1 HSPs)
chr1 (24-295)||(411322-411580)
[»] chr3 (3 HSPs)
chr3 (25-292)||(45227735-45227996)
chr3 (155-296)||(29896665-29896808)
chr3 (24-86)||(29896553-29896615)
[»] chr7 (1 HSPs)
chr7 (211-296)||(26300141-26300227)
[»] chr6 (1 HSPs)
chr6 (153-296)||(29935083-29935224)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 28173643 - 28173413
Alignment:
Q  24 acatcatcagtaaatcataaaaatggtcaagatagagatctaccgcagagcataggtgtttttcgtagacaagaagaaaactccaagagatttaatcctt 123  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||   ||||||||||||||||||||||    
T  28173643 acatcataaataaatcataaaaatggtcaagatagagatctaccgcatagcataggtgtttttcctagacaagaa---aactccaagagatttaatcctt 28173547  T
Q  124 tgcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacga 223  Q
    |||||||| ||| |||             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  28173546 tgcaaactctgactctaaaaaaaa-----tgaaatcaaagaaatggtgagtcacaagaattcaatggggtcataacaaacaaagtggacataatggacaa 28173452  T
Q  224 gtgaagttttcaccggtcttta-ccaaacaatttttaaa 261  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  28173451 gtgaagttttcaccggtctttatccaaacaatttttaaa 28173413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 24 - 295
Target Start/End: Complemental strand, 11951900 - 11951637
Alignment:
Q  24 acatcatcagtaaatcataaaaatggtcaagatagagatctaccgcagagcataggtgtttttcgtagacaagaagaaaactccaagagatttaatcctt 123  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||| ||  ||| |||   ||||||| |||||| |||| ||    
T  11951900 acatcataagtaaatcataaaattggtcaaggtagagatctaccgcaaagcatagatgtttttagtgaacatgaa---aactccatgagatt-aatcatt 11951805  T
Q  124 tgcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacat--aatggac 221  Q
    ||||| || |||||               ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||  ||| ||     
T  11951804 tgcaacctttgaat-------tgaaaaaatgaaaccaaagaaatggtgagtcacaataattcaatgggagcatgacaaacaaagtggacatttaatagat 11951712  T
Q  222 gagtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgc 295  Q
     | ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11951711 aaatgaaaatttcaccggtctttatccaaacaatttttaaactaaaaatttcatcctttggaaactcattcatgc 11951637  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 2744109 - 2743968
Alignment:
Q  153 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 249  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  2744109 tgaaaccaaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 2744015  T
Q  250 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 296  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||    
T  2744014 acaatttttaaactaaaagtttcatcatttgaaaactcattcatgct 2743968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 24 - 296
Target Start/End: Complemental strand, 2464729 - 2464463
Alignment:
Q  24 acatcatcagtaaatcataaaaa--tggtcaagatagagatctaccgcagagcataggtgtttttcgtagacaagaagaaaactccaagagatttaatcc 121  Q
    ||||||| ||||||||| |||||  |||||||| ||||||||||||||||||||||| ||| ||  |||   |||| ||||||||||||||||| |||||    
T  2464729 acatcataagtaaatcacaaaaaaatggtcaagctagagatctaccgcagagcatagatgtcttcggta---aagatgaaaactccaagagatt-aatcc 2464634  T
Q  122 tttgcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggac 221  Q
    ||||||||||||||||               ||||  |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||     
T  2464633 tttgcaaactgtgaat-----aaaaataaaatgaatacaaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggacataatggat 2464539  T
Q  222 gagtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 296  Q
    |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  2464538 gagtgaagttttcaccggtctttatccaaaccattttttaactaaaaatttcatcctttgaaaactcattcatgct 2464463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 153 - 280
Target Start/End: Original strand, 6736510 - 6736629
Alignment:
Q  153 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 251  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||||   |||||         ||||||||| ||||||    
T  6736510 tgaaaccaaagaaatggtgagtcacaagaattcaacgggagcatgacaaacaaagtagaaataatgggtaagtga---------cggtctttacccaaac 6736600  T
Q  252 aatttttaaactaaaaatttcatcctttg 280  Q
    |||||||||||||||| ||||||||||||    
T  6736601 aatttttaaactaaaagtttcatcctttg 6736629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 24 - 295
Target Start/End: Complemental strand, 19248 - 18990
Alignment:
Q  24 acatcatcagtaaatcataaaaatggtcaagatagagatctaccgcagagcataggtgtttttcgtagacaagaagaaaactccaagagatttaatcctt 123  Q
    ||||||| ||||||||| |||| |||||||||||||| |||||||||  |||||| ||||||| ||||||| |||   ||||| | |||||| |||| ||    
T  19248 acatcataagtaaatcacaaaattggtcaagatagaggtctaccgcaaggcatagatgtttttggtagacatgaa---aactctatgagatt-aatcatt 19153  T
Q  124 tgcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacga 223  Q
    ||||| |||||||                ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||       
T  19152 tgcaatctgtgaa----------aagaaatgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggatag 19063  T
Q  224 gtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgc 295  Q
    |||||  ||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  19062 gtgaaaatttcaccggtctttacccaaacaatttttaaactaaaaatttcatcatttggaaactcattcatgc 18990  T

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Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 411322 - 411580
Alignment:
Q  24 acatcatcagtaaatcataaaaatggtcaagatagagatctaccgcagagcataggtgtttttcgtagacaagaagaaaactccaagagatttaatcctt 123  Q
    ||||||| ||||||||| |||| |||||||||||||| |||||||||  |||||| ||||||| ||||||| |||   ||||| | |||||| |||| ||    
T  411322 acatcataagtaaatcacaaaattggtcaagatagaggtctaccgcaaggcatagatgtttttggtagacatgaa---aactctatgagatt-aatcatt 411417  T
Q  124 tgcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacga 223  Q
    ||||| |||||||                ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||       
T  411418 tgcaatctgtgaa----------aagaaatgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggatag 411507  T
Q  224 gtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgc 295  Q
    |||||  ||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  411508 gtgaaaatttcaccggtctttacccaaacaatttttaaactaaaaatttcatcatttggaaactcattcatgc 411580  T

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Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 45227996 - 45227735
Alignment:
Q  25 catcatcagtaaatcataaaaatggtcaagatagagatctaccgcagagcataggtgtttttcgtagacaagaagaaaactccaagagatttaatccttt 124  Q
    |||||| |||||||||||||||||||||||||||| ||||||| || ||||||  ||||||| ||| ||  |||   ||||||| |||||| ||||||||    
T  45227996 catcataagtaaatcataaaaatggtcaagatagaaatctaccacaaagcatatatgtttttggtaaacctgaa---aactccatgagatt-aatccttt 45227901  T
Q  125 gcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtgg-acataatggacga 223  Q
    |||| ||||||||||             | ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||   |    
T  45227900 gcaatctgtgaatctaaaaaaaaa----taaaaccaaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggaaaataatgggtaa 45227805  T
Q  224 gtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattca 292  Q
    |||||  ||||||||||||||| |||||||||||||||||||| |||||||||||| | || ||||||||    
T  45227804 gtgaaaatttcaccggtctttacccaaacaatttttaaactaacaatttcatccttcgaaagctcattca 45227735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 155 - 296
Target Start/End: Original strand, 29896665 - 29896808
Alignment:
Q  155 aaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtctttaccaaacaa- 253  Q
    |||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||||| |||||| ||||||||||||||||| | ||| |     
T  29896665 aaatcaaagaaatgatgaatcacaagaattcaatgggagcatgacaaaccaagtggacataatggatgagtgatgttttcaccggtctttatccaaccat 29896764  T
Q  254 --tttttaaactaaaaatttcatcctttgtaaactcattcatgct 296  Q
      ||||||||||||||| ||||||||||  || ||||||||||||    
T  29896765 tttttttaaactaaaaa-ttcatccttttaaagctcattcatgct 29896808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 29896553 - 29896615
Alignment:
Q  24 acatcatcagtaaatcataaaaatggtcaagatagagatctaccgcagagcataggtgttttt 86  Q
    ||||||| || |||||| ||||| ||||||||||||||||||  ||| ||||||| |||||||    
T  29896553 acatcataagcaaatcacaaaaacggtcaagatagagatctaatgcaaagcatagatgttttt 29896615  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 26300141 - 26300227
Alignment:
Q  211 acataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 296  Q
    |||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26300141 acataatggatgagtgaagttttcatcggtcattatccaaacaatttttaaactaaaaatttcatcctttgaaaactcattcatgct 26300227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 29935224 - 29935083
Alignment:
Q  153 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 249  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  29935224 tgaaaccaaagaaatggtaagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 29935130  T
Q  250 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 296  Q
    |||||||||||||||||| ||||||| |||| || ||||||||||||    
T  29935129 acaatttttaaactaaaagtttcatcatttgaaagctcattcatgct 29935083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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