View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0079_low_4 (Length: 368)
Name: NF0079_low_4
Description: NF0079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0079_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 2 - 329
Target Start/End: Complemental strand, 8144987 - 8144659
Alignment:
| Q |
2 |
acaattttcaggacgcccttaagacacttgttaacctcggcaatctacatctatgaacccatgatggcaagctcagaggtttgtggaaagaaaattcctc |
101 |
Q |
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| T |
8144987 |
acaattttcaggacgcccttaagacacttattaacctcggcaatctacatctatgaacccaggatggcaagctcagaggtttgtggaaagaaaattcctc |
8144888 |
T |
|
| Q |
102 |
gtctagggattaaacactctttctttcatctggctaagaaaagactagcttgcctctggtggaaagaatgaaagcatgaatttgttcatcaaatttttac |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8144887 |
gtctagggattaaacactctttctttcatctggctaagaaaagactagcttgcctctggtggaaagaatgaaagcatgattttgttcatcaaatttttat |
8144788 |
T |
|
| Q |
202 |
gaattacaactgaactccactacatgactgaag-nnnnnnnntaaggacaatgagagacattgtgtccaaaagtaatattatacctcaaataagttataa |
300 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8144787 |
gaattacaactgaactccactacatgaatgaagaaaaaaaaataaggacaatgagagacattgtgtccaaaagtaatattatacctcaaataagttataa |
8144688 |
T |
|
| Q |
301 |
ataaatagtactcttgataatttgaagta |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
8144687 |
ataaatagtactcttgataatttgaagta |
8144659 |
T |
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