View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0079_low_5 (Length: 251)

Name: NF0079_low_5
Description: NF0079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0079_low_5
NF0079_low_5
[»] chr7 (6 HSPs)
chr7 (13-148)||(8145069-8145202)
chr7 (27-66)||(44410541-44410580)
chr7 (27-65)||(1292089-1292127)
chr7 (27-65)||(35338377-35338415)
chr7 (29-69)||(47267071-47267111)
chr7 (27-67)||(47437810-47437850)
[»] chr8 (3 HSPs)
chr8 (27-72)||(4437498-4437543)
chr8 (27-65)||(4438557-4438595)
chr8 (27-67)||(34151134-34151174)
[»] chr4 (5 HSPs)
chr4 (27-67)||(20004786-20004826)
chr4 (27-75)||(54055319-54055367)
chr4 (27-66)||(26108853-26108892)
chr4 (27-65)||(1237534-1237572)
chr4 (27-67)||(4505822-4505862)
[»] scaffold0047 (1 HSPs)
scaffold0047 (27-67)||(65544-65584)
[»] chr6 (4 HSPs)
chr6 (27-67)||(32279622-32279662)
chr6 (27-65)||(8866875-8866913)
chr6 (27-65)||(8872566-8872604)
chr6 (27-67)||(29729672-29729712)
[»] chr2 (9 HSPs)
chr2 (27-67)||(35468746-35468786)
chr2 (27-65)||(360367-360405)
chr2 (27-65)||(9415042-9415080)
chr2 (27-72)||(28416970-28417015)
chr2 (27-67)||(11090117-11090157)
chr2 (27-67)||(11694221-11694261)
chr2 (29-65)||(31126368-31126404)
chr2 (27-67)||(35155147-35155187)
chr2 (27-67)||(38502268-38502308)
[»] chr1 (6 HSPs)
chr1 (27-67)||(35632998-35633038)
chr1 (27-65)||(42470411-42470449)
chr1 (27-67)||(10427505-10427545)
chr1 (27-67)||(31239084-31239124)
chr1 (27-67)||(36564088-36564128)
chr1 (27-63)||(49840489-49840525)
[»] scaffold1793 (1 HSPs)
scaffold1793 (27-62)||(574-609)
[»] scaffold1777 (1 HSPs)
scaffold1777 (27-65)||(600-638)
[»] chr5 (7 HSPs)
chr5 (27-65)||(11832448-11832486)
chr5 (27-65)||(14861851-14861889)
chr5 (28-65)||(36629680-36629717)
chr5 (27-64)||(40693307-40693344)
chr5 (30-67)||(41863326-41863363)
chr5 (27-67)||(14000852-14000892)
chr5 (27-63)||(37516896-37516932)
[»] chr3 (5 HSPs)
chr3 (13-65)||(15039420-15039472)
chr3 (31-67)||(26410419-26410455)
chr3 (27-67)||(36643593-36643633)
chr3 (27-67)||(47410937-47410977)
chr3 (27-67)||(47411073-47411113)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 8145202 - 8145069
Alignment:
Q  13 aatatagcaaatagtataatataaattcttatattttttaatgataccaacaaaaaattattactgtaggacaaatttgttcaaaggtataattggaata 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||    
T  8145202 aatatagcaaatagtataatataaattcttatattttttaatgataccaacaaaaaa--attactataggacaaatttgttcaaaggtataattggaata 8145105  T
Q  113 ataaaaagggttatgctaacaaatctcgtaagggaa 148  Q
    |||||||||||||||||||||| |||||||||||||    
T  8145104 ataaaaagggttatgctaacaagtctcgtaagggaa 8145069  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 44410541 - 44410580
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaa 66  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  44410541 tataatataaattcttatattttttaatgacaccaacaaa 44410580  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 1292089 - 1292127
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  1292089 tataatataaattcttatcttttttaatgacaccaacaa 1292127  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 35338415 - 35338377
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  35338415 tataatataaattcttatcttttttaatgacaccaacaa 35338377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 47267071 - 47267111
Alignment:
Q  29 taatataaattcttatattttttaatgataccaacaaaaaa 69  Q
    |||||||||||||| |||||||| |||| ||||||||||||    
T  47267071 taatataaattcttgtatttttttatgacaccaacaaaaaa 47267111  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 47437810 - 47437850
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||||||| | ||||||||||    
T  47437810 tataatataaattcttatcttttttaataacaccaacaaaa 47437850  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 4437498 - 4437543
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaaaatta 72  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  4437498 tataatataaattcttatattttttaatgataccaataataaatta 4437543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 4438595 - 4438557
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  4438595 tataatataaattcttatcttttttaatgataccaacaa 4438557  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 34151174 - 34151134
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  34151174 tataatataaattcttatctttttaaatgacaccaacaaaa 34151134  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 20004786 - 20004826
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  20004786 tataatataaattcttatattttttaatgacaccaacaaaa 20004826  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 54055367 - 54055319
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaaaattatta 75  Q
    |||||||||||||||||||||||| || || |||||||||| |||||||    
T  54055367 tataatataaattcttatatttttgaacgacaccaacaaaatattatta 54055319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 26108892 - 26108853
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaa 66  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  26108892 tataatataaattcttatattttttaatgacatcaacaaa 26108853  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 1237572 - 1237534
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  1237572 tataatataaattcttatcttttttaatgacaccaacaa 1237534  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 4505862 - 4505822
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  4505862 tataatataaattcttatctttttgaatgacaccaacaaaa 4505822  T

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Target: scaffold0047 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 65584 - 65544
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  65584 tataatataaattcttatctttttgaatgataccaacaaaa 65544  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 32279622 - 32279662
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  32279622 tataatataaattcttatcttttttaatgacaccaacaaaa 32279662  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 8866875 - 8866913
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8866875 tataatataaattcttatcttttttaatgacaccaacaa 8866913  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 8872566 - 8872604
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8872566 tataatataaattcttatcttttttaatgacaccaacaa 8872604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 29729672 - 29729712
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||||||||| | ||||||||    
T  29729672 tataatataaattcttatcttttttaatgaaatcaacaaaa 29729712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 35468786 - 35468746
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  35468786 tataatataaattcttatattttttattgacaccaacaaaa 35468746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 360405 - 360367
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  360405 tataatataaattcttattttttttaatgacaccaacaa 360367  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 9415042 - 9415080
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  9415042 tataatctaaattcttattttttttaatgataccaacaa 9415080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 28417015 - 28416970
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaaaatta 72  Q
    |||||||||||||||||| ||||| ||||| |||||||||| ||||    
T  28417015 tataatataaattcttatctttttgaatgacaccaacaaaatatta 28416970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 11090157 - 11090117
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  11090157 tataatataaattcttatctttttgaatgaaaccaacaaaa 11090117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 11694221 - 11694261
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    ||||||||||||| |||||||||| ||||| ||||||||||    
T  11694221 tataatataaatttttatatttttgaatgacaccaacaaaa 11694261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 31126368 - 31126404
Alignment:
Q  29 taatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  31126368 taatataaattcttatctttttgaatgataccaacaa 31126404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 35155187 - 35155147
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  35155187 tataatataaattcttatctttttaaatgataccatcaaaa 35155147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 38502308 - 38502268
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||| ||||||||||| ||||    
T  38502308 tataatataaattcttatctttttgaatgataccaataaaa 38502268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 35633038 - 35632998
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  35633038 tataatataaattcttatattttttaataacaccaacaaaa 35632998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 42470411 - 42470449
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  42470411 tataatataaattcttatattttttaatgacaacaacaa 42470449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 10427545 - 10427505
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||||||||| | ||||||||    
T  10427545 tataatataaattcttattttttttaatgacatcaacaaaa 10427505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 31239124 - 31239084
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||| ||||||||||| ||||    
T  31239124 tataatataaattcttatctttttaaatgataccaataaaa 31239084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 36564128 - 36564088
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||||||||| | ||||||||    
T  36564128 tataatataaattcttattttttttaatgacatcaacaaaa 36564088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 49840489 - 49840525
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaac 63  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  49840489 tataatatacattcttatattttttaatgacaccaac 49840525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1793 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 574 - 609
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaa 62  Q
    |||||||||||||||||||||||||||||| |||||    
T  574 tataatataaattcttatattttttaatgacaccaa 609  T

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Target: scaffold1777 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1777
Description:

Target: scaffold1777; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 638 - 600
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  638 tataatataaattcttatatttttcaataataccaacaa 600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 11832486 - 11832448
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  11832486 tataatataaattcttatcttttttaatgacaccaacaa 11832448  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 14861851 - 14861889
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  14861851 tataatattaattcttatattttttaatgacaccaacaa 14861889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 36629717 - 36629680
Alignment:
Q  28 ataatataaattcttatattttttaatgataccaacaa 65  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  36629717 ataatataaattcttatattttttaataatatcaacaa 36629680  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 40693307 - 40693344
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaaca 64  Q
    |||||||||||||||||||||||||||| | |||||||    
T  40693307 tataatataaattcttatattttttaataacaccaaca 40693344  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 41863326 - 41863363
Alignment:
Q  30 aatataaattcttatattttttaatgataccaacaaaa 67  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  41863326 aatataaattcttatcttttttaatgacaccaacaaaa 41863363  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 14000852 - 14000892
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    ||||||||||||| |||| ||||||||||| ||||||||||    
T  14000852 tataatataaatttttatcttttttaatgacaccaacaaaa 14000892  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 37516896 - 37516932
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaac 63  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  37516896 tataatataaattcttatatttttgaatgacaccaac 37516932  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 15039472 - 15039420
Alignment:
Q  13 aatatagcaaatagtataatataaattcttatattttttaatgataccaacaa 65  Q
    |||||||||||||  |||||||||||| |||| ||||||||| | ||||||||    
T  15039472 aatatagcaaatataataatataaattattatcttttttaataacaccaacaa 15039420  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 26410455 - 26410419
Alignment:
Q  31 atataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  26410455 atataaattcttatcttttttaatgacaccaacaaaa 26410419  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 36643593 - 36643633
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  36643593 tataatataaattcttatcgttttgaatgataccaacaaaa 36643633  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 47410977 - 47410937
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||||||| | ||||||||||    
T  47410977 tataatataaattcttatcttttttaataacaccaacaaaa 47410937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 47411113 - 47411073
Alignment:
Q  27 tataatataaattcttatattttttaatgataccaacaaaa 67  Q
    |||||||||||||||||| ||||||||| | ||||||||||    
T  47411113 tataatataaattcttatcttttttaataacaccaacaaaa 47411073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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