View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0080_high_5 (Length: 396)
Name: NF0080_high_5
Description: NF0080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0080_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 10490594 - 10490891
Alignment:
| Q |
6 |
agcagcagagttgaaatatggtggaatgttgactctttgcccataatatgcctgaagatataacagaaacttaaaatcaccaaaagtagtttttaatgga |
105 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
10490594 |
agcagccgagttgaaatatggaggaatgttgactctttgcccataatatgcctgaagatatagcagaaactttaaatcaccaaaagtagtttttaatggg |
10490693 |
T |
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| Q |
106 |
caattcttttcaaaagtgaaagcaatctgggaccaatgtaaatcccatcatagatatcatagtccgttcctcgcagattatcaaatcc-------agttg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10490694 |
caattcttttcaaaagtgaaagcaatctgggaccaatgtaaatcccatcatagatatcatagtccgttcctcgcagattatcaaatccagttgcaagttg |
10490793 |
T |
|
| Q |
199 |
cgacactatgctgaatttgagagccaatcaaaatggggg-nnnnnnntacatgggcaatatatttcaaataagatagctgaagttttcatgaaaatat |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10490794 |
cgacactatgctgaatttgagagccaatcaaaatgggggaaaaaaaatacatgggcaatatatttcaaataagatagctgaagttttcatgaaaatat |
10490891 |
T |
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