View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0080_low_1 (Length: 651)
Name: NF0080_low_1
Description: NF0080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0080_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 54 - 562
Target Start/End: Original strand, 36448199 - 36448707
Alignment:
| Q |
54 |
acacaaacatggaacaatggcggaactgaagtaaactagatagaaatcacaacctccatttccaaaaacctcataaacccacaaccttaaaaaaccttac |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36448199 |
acacaaacatggaacaatggcggaactgaagtaaactagatagaaatcacaacctccatttccataaacctcataaacccacaaccttaaaaaaccttac |
36448298 |
T |
|
| Q |
154 |
cttaacttcatcattcatggcgaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcac |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36448299 |
cttaacttcatcattcatggcgaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcac |
36448398 |
T |
|
| Q |
254 |
acattcgatcgtccttcaatccaacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcccgattctcctatcctcatcccga |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36448399 |
acattcgatcgtccttcaatccaacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcctgattctcctatcctcatcccga |
36448498 |
T |
|
| Q |
354 |
accacgcgcttcgtagtttaatttctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccctaattttgaa |
453 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36448499 |
accacgcgcttcgtagtttaatctctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccctaattttgaa |
36448598 |
T |
|
| Q |
454 |
ttcttcttcttccgattccaaaattgactcgcttcgtcaacttgctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgcc |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36448599 |
ttcttcttcttccgattccaaaattgactcgcttcgtcaactcgctcgtctttctaaacgtgatgccagtttccgtcgtcgtcttgttgattccggtgcc |
36448698 |
T |
|
| Q |
554 |
gtctctgct |
562 |
Q |
| |
|
||||||||| |
|
|
| T |
36448699 |
gtctctgct |
36448707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 558
Target Start/End: Original strand, 11446882 - 11446943
Alignment:
| Q |
497 |
gctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctc |
558 |
Q |
| |
|
|||||||||||||||| |||||| | ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
11446882 |
gctcgtctttctaaacatgatgctaattttcgtcgccgtcttgttgattcaggtgccgtctc |
11446943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 558
Target Start/End: Complemental strand, 2535366 - 2535305
Alignment:
| Q |
497 |
gctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctc |
558 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||| ||||||||||||| ||||||||||| |
|
|
| T |
2535366 |
gctcgtctttctaaacgtgatgctaattttcgtcgttgtcttgttgattcaggtgccgtctc |
2535305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 15972047 - 15972087
Alignment:
| Q |
188 |
gaacacttcaaatgtccaatctcactcgaaataatgtccga |
228 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
15972047 |
gaacacttcaaatgtccaatttcacttgaaatcatgtccga |
15972087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 2660305 - 2660174
Alignment:
| Q |
188 |
gaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatccaacgttggcttg |
287 |
Q |
| |
|
|||||||| || || ||||| || || ||||| |||||||| || || |||||||| |||||||| || || || ||| |||||||||||| ||||||| |
|
|
| T |
2660305 |
gaacacttgaagtgcccaatttcgcttgaaattatgtccgatccggttatcctctcctccggtcagacctttgaccgttcttcaatccaacaatggcttg |
2660206 |
T |
|
| Q |
288 |
acgaaggtcatcgtacttgtccaattaccaaa |
319 |
Q |
| |
|
|| |||||| || | |||||||| |||||| |
|
|
| T |
2660205 |
acctaggtcaccggaaatgtccaatcaccaaa |
2660174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 890 times since January 2019
Visitors: 1286