View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0080_low_11 (Length: 252)
Name: NF0080_low_11
Description: NF0080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0080_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 10490480 - 10490726
Alignment:
| Q |
6 |
agcagcacagagaaatagacacagaaatatcaatggtataacaaaataaatgaacctatggagcactacctgtggtggtccccacatgtatgggtgagga |
105 |
Q |
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| T |
10490480 |
agcaacacagagaaatagacacagaaatatcaatggtataacaaaataaatgaacctatggagcactacctgtggtggtccccacatgtatgggtgagga |
10490579 |
T |
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| Q |
106 |
gcatgaccaggagcagcagccgagttgaaatatggtggaatgttgactctttgcccataatatgcctgaagatataacagaaacttaaaatcaccaaaag |
205 |
Q |
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| T |
10490580 |
gcatgaccaggagcagcagccgagttgaaatatggaggaatgttgactctttgcccataatatgcctgaagatatagcagaaactttaaatcaccaaaag |
10490679 |
T |
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| Q |
206 |
tagtttttaatggacaattcttttcaaaagtgaaagcaatctgggac |
252 |
Q |
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| T |
10490680 |
tagtttttaatgggcaattcttttcaaaagtgaaagcaatctgggac |
10490726 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 48263698 - 48263584
Alignment:
| Q |
72 |
tacctgtggtggtccccacatgtatgggtgaggagcatgaccaggagcagcagccgagttgaaatatggtggaatgttgactctttgcccataatatgcc |
171 |
Q |
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|||||||||||| |||||||| ||||||||||||| ||||||| ||| ||| |||||| | || ||||| ||| |||||| | |||||||||||| |
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| T |
48263698 |
tacctgtggtggcccccacatatatgggtgaggagtgtgaccagaagccacaggtgagttgtagtaaggtggcatggcaactcttggtccataatatgcc |
48263599 |
T |
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| Q |
172 |
tgaagatataacaga |
186 |
Q |
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| T |
48263598 |
tgaagatatagcaga |
48263584 |
T |
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