View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0082_high_2 (Length: 252)

Name: NF0082_high_2
Description: NF0082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0082_high_2
NF0082_high_2
[»] chr6 (1 HSPs)
chr6 (30-252)||(6685830-6686052)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 6685830 - 6686052
Alignment:
Q  30 ttaaggtgtctttattgtaactgtctatagacggcaatgccaacttcttcaacaagctaaaggaatcttcataacttaatcccttcaaatgaaatagaga 129  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6685830 ttaaggtgtctttctcgtaactgtctatagacggcaatgccaacttcttcaacaagctaaaggaatcttcataacttaatcccttcaaatgaaatagaga 6685929  T
Q  130 gttgactccaatttcctcggccacaattctacaacgagttgtcaatagaaatcttagtttcgcaagccaccccacacatcaaagaacttgtgagttgatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6685930 gttgactccaatttcctcggccacaattctacaacgagttgtcaatagaaatcttagtttcgcaagccaccccacacatcaaagaacttgtgagttgatt 6686029  T
Q  230 ccatttttcacaagtcaagtttc 252  Q
    |||||||||||||||||||||||    
T  6686030 ccatttttcacaagtcaagtttc 6686052  T

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