View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0082_high_5 (Length: 241)
Name: NF0082_high_5
Description: NF0082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0082_high_5
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 20998400 - 20998622
Alignment:
Q
16
catcatcttagaagggaatagtcgctgaattgaaggaaaaggttccgcagctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgctggga
115
Q
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
20998400
catcatcttcgaagggaatagtcgctgaattgaaggaaaaggttccgcagctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgctggga
20998499
T
Q
116
gaaagacaaacctgttccgtttttgtttctctgcttagcgtttgatatgattaatgaagagagtggaaggattgtgatcactgacattgtgtgtaatttg
215
Q
||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
T
20998500
gaaagacaaacctgttccgtttttgtttctctgtttggcgtttgatatgattaacgaagagagtgggaggattgtgatcactgacattgtgtgtaatttg
20998599
T
Q
216
ttgagaactgtgatacatgctac
238
Q
|||||||||||||||||||||||
T
20998600
ttgagaactgtgatacatgctac
20998622
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 20988185 - 20988387
Alignment:
Q
33
atagtcgctgaattgaaggaaaaggttccgcagctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgctgggagaaagacaaacctgttc
132
Q
||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |
T
20988185
atagtcgctgaattgaaggaaaaagttccggagctgaagaagaaaccggagaatttcgatccgagttcggttgtttgctgggagaaaaacaaacctgtgc
20988284
T
Q
133
cgtttttgtttctctgcttagcgtttgatatgattaatgaagagagtggaaggattgtgatcactgacattgtgtgtaatttgttgagaactgtgataca
232
Q
||||||||||||||| |||||||||||| |||||| ||||||| ||||| |||||||||||||| |||||||||||| ||||||| |||||||||||
T
20988285
cgtttttgtttctctctttagcgtttgatttgattagcaaagagaggggaagaattgtgatcactgagattgtgtgtaatctgttgaggactgtgataca
20988384
T
Q
233
tgc
235
Q
|||
T
20988385
tgc
20988387
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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