View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0082_low_1 (Length: 288)

Name: NF0082_low_1
Description: NF0082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0082_low_1
NF0082_low_1
[»] scaffold0356 (1 HSPs)
scaffold0356 (25-288)||(17266-17529)
[»] scaffold0002 (3 HSPs)
scaffold0002 (25-256)||(320757-320988)
scaffold0002 (77-184)||(319209-319314)
scaffold0002 (260-288)||(320686-320714)
[»] chr7 (14 HSPs)
chr7 (25-245)||(22844370-22844590)
chr7 (25-189)||(12780636-12780800)
chr7 (25-189)||(12785490-12785654)
chr7 (25-189)||(9000633-9000797)
chr7 (25-170)||(42232567-42232711)
chr7 (29-189)||(7037291-7037451)
chr7 (33-148)||(21069592-21069706)
chr7 (206-254)||(12785405-12785453)
chr7 (206-254)||(7037488-7037536)
chr7 (206-254)||(12780551-12780599)
chr7 (206-254)||(42232767-42232814)
chr7 (206-252)||(18939186-18939232)
chr7 (206-254)||(21069477-21069524)
chr7 (260-288)||(22844643-22844671)
[»] chr6 (10 HSPs)
chr6 (25-257)||(30881892-30882124)
chr6 (25-189)||(12517841-12518005)
chr6 (26-175)||(2200400-2200549)
chr6 (29-189)||(10188593-10188753)
chr6 (206-251)||(2200304-2200349)
chr6 (206-254)||(12518042-12518090)
chr6 (206-254)||(15334064-15334112)
chr6 (206-254)||(18857304-18857352)
chr6 (260-288)||(12518134-12518162)
chr6 (260-288)||(15334156-15334184)
[»] chr5 (22 HSPs)
chr5 (25-246)||(17871070-17871291)
chr5 (25-189)||(8428073-8428237)
chr5 (25-189)||(27881651-27881815)
chr5 (25-189)||(39883742-39883906)
chr5 (21-184)||(3876084-3876247)
chr5 (25-189)||(37373503-37373667)
chr5 (25-184)||(3690544-3690703)
chr5 (25-184)||(24629447-24629605)
chr5 (31-172)||(37261876-37262017)
chr5 (25-184)||(25542287-25542445)
chr5 (25-189)||(14192300-14192463)
chr5 (25-184)||(30346123-30346281)
chr5 (25-170)||(10025545-10025689)
chr5 (209-254)||(39883946-39883991)
chr5 (206-254)||(8427988-8428036)
chr5 (206-254)||(27881852-27881900)
chr5 (206-254)||(37373704-37373752)
chr5 (206-254)||(14192215-14192263)
chr5 (206-254)||(10025745-10025792)
chr5 (206-254)||(30346034-30346081)
chr5 (206-252)||(24629366-24629411)
chr5 (206-254)||(25542198-25542245)
[»] scaffold0090 (2 HSPs)
scaffold0090 (25-189)||(48448-48612)
scaffold0090 (206-254)||(48363-48411)
[»] chr8 (10 HSPs)
chr8 (25-189)||(25218053-25218217)
chr8 (25-189)||(30326042-30326206)
chr8 (25-184)||(21113238-21113396)
chr8 (25-189)||(25208535-25208699)
chr8 (25-154)||(7822405-7822534)
chr8 (206-254)||(25217968-25218016)
chr8 (206-254)||(30326243-30326291)
chr8 (209-254)||(7822603-7822648)
chr8 (209-254)||(21113149-21113193)
chr8 (260-288)||(7822691-7822719)
[»] chr4 (12 HSPs)
chr4 (25-189)||(35856474-35856638)
chr4 (25-189)||(49786340-49786504)
chr4 (25-170)||(55558631-55558775)
chr4 (25-189)||(13344502-13344666)
chr4 (25-189)||(49710739-49710903)
chr4 (25-144)||(13337802-13337921)
chr4 (206-254)||(49710940-49710988)
chr4 (206-254)||(13344703-13344751)
chr4 (206-254)||(35856675-35856723)
chr4 (206-254)||(49786255-49786303)
chr4 (206-254)||(5337059-5337107)
chr4 (206-254)||(55558528-55558575)
[»] chr2 (24 HSPs)
chr2 (25-189)||(28665684-28665848)
chr2 (25-189)||(37824518-37824682)
chr2 (25-189)||(41919685-41919849)
chr2 (25-189)||(24246392-24246554)
chr2 (25-189)||(21395937-21396101)
chr2 (25-189)||(27509941-27510105)
chr2 (25-175)||(27193056-27193205)
chr2 (25-175)||(27842870-27843019)
chr2 (29-189)||(17683401-17683561)
chr2 (25-184)||(24268564-24268722)
chr2 (25-189)||(35610220-35610383)
chr2 (206-254)||(21396138-21396186)
chr2 (206-254)||(28665599-28665647)
chr2 (206-254)||(37824433-37824481)
chr2 (206-254)||(41919600-41919648)
chr2 (206-254)||(27193256-27193304)
chr2 (206-254)||(27843070-27843118)
chr2 (209-254)||(24268475-24268519)
chr2 (206-258)||(24246591-24246643)
chr2 (206-254)||(27510142-27510190)
chr2 (206-246)||(35610420-35610460)
chr2 (260-288)||(27193348-27193376)
chr2 (260-288)||(27843162-27843190)
chr2 (260-288)||(35610512-35610540)
[»] scaffold0003 (2 HSPs)
scaffold0003 (25-184)||(183378-183537)
scaffold0003 (206-246)||(183579-183619)
[»] chr3 (25 HSPs)
chr3 (25-184)||(10968275-10968434)
chr3 (25-189)||(33338-33502)
chr3 (25-189)||(52918593-52918757)
chr3 (29-184)||(50410739-50410894)
chr3 (25-184)||(10000974-10001132)
chr3 (29-184)||(13530610-13530765)
chr3 (25-184)||(10111167-10111325)
chr3 (25-184)||(11369206-11369364)
chr3 (36-172)||(10039197-10039333)
chr3 (93-184)||(10244920-10245010)
chr3 (25-98)||(10238121-10238194)
chr3 (122-189)||(10113317-10113384)
chr3 (122-189)||(10250421-10250488)
chr3 (115-184)||(27275059-27275127)
chr3 (209-254)||(50410939-50410984)
chr3 (206-254)||(10245052-10245099)
chr3 (209-254)||(33542-33587)
chr3 (206-254)||(10111367-10111414)
chr3 (206-246)||(11369406-11369446)
chr3 (206-254)||(13530807-13530855)
chr3 (206-254)||(27275163-27275210)
chr3 (206-254)||(46913247-46913295)
chr3 (122-184)||(10013721-10013783)
chr3 (206-254)||(10001174-10001221)
chr3 (206-254)||(10968185-10968233)
[»] scaffold0073 (5 HSPs)
scaffold0073 (25-189)||(32499-32663)
scaffold0073 (29-189)||(322-482)
scaffold0073 (206-254)||(32700-32748)
scaffold0073 (206-254)||(519-567)
scaffold0073 (257-288)||(32789-32820)
[»] scaffold0118 (2 HSPs)
scaffold0118 (25-170)||(28227-28371)
scaffold0118 (206-254)||(28124-28171)
[»] chr1 (14 HSPs)
chr1 (25-184)||(16042592-16042749)
chr1 (25-184)||(52501144-52501302)
chr1 (34-189)||(37389640-37389795)
chr1 (25-189)||(6310482-6310646)
chr1 (29-184)||(2329737-2329892)
chr1 (30-189)||(36207787-36207946)
chr1 (25-103)||(2452690-2452769)
chr1 (25-92)||(48774920-48774987)
chr1 (206-253)||(36207983-36208030)
chr1 (209-254)||(16042794-16042839)
chr1 (206-254)||(6310397-6310445)
chr1 (206-254)||(52501338-52501385)
chr1 (257-288)||(36208073-36208104)
chr1 (209-254)||(2329937-2329982)
[»] scaffold0134 (2 HSPs)
scaffold0134 (25-184)||(4754-4912)
scaffold0134 (206-254)||(4665-4712)
[»] scaffold0225 (1 HSPs)
scaffold0225 (30-184)||(13771-13924)
[»] scaffold1139 (1 HSPs)
scaffold1139 (25-189)||(1584-1748)
[»] scaffold0107 (2 HSPs)
scaffold0107 (25-189)||(42542-42706)
scaffold0107 (206-254)||(42743-42791)
[»] scaffold0262 (2 HSPs)
scaffold0262 (25-184)||(19572-19730)
scaffold0262 (206-254)||(19772-19819)
[»] scaffold0550 (1 HSPs)
scaffold0550 (30-189)||(56-215)
[»] scaffold0017 (2 HSPs)
scaffold0017 (30-184)||(187126-187277)
scaffold0017 (208-254)||(187321-187366)


Alignment Details
Target: scaffold0356 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 25 - 288
Target Start/End: Complemental strand, 17529 - 17266
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17529 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatgcct 17430  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagccaacggacaatgttttacccttcgatctaacagcag 224  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  17429 cattaatctcaatagggactgtcagcgtcgagtgtgcggttcttccacctgataagagaaaagccaacggacaatgttttaccctttgatctaacagcaa 17330  T
Q  225 ccgacaatgttttccatataaaagtttttcgagttagaaccaacggactccatgatcttgtcat 288  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17329 ccgacaatgttttccatataaaagtttttcgagtcagaaccaacggactccatgatcttgtcat 17266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 320988 - 320757
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||| || |||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||   |||||||||| |||    
T  320988 catcgatgtatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtcttccctaggactatccttttctatcacaagcgatgatgcct 320889  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagccaacggacaatgttttacccttcgatctaacagcag 224  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||| |||    
T  320888 cattaatctcaatagggactgtcaacgtcgagtgtggggttcttccacctggtaaaagaagagccaacggacaatgttttccccttcgatctaacaacag 320789  T
Q  225 ccgacaatgttttccatataaaagtttttcga 256  Q
    || |||||||||||||||||||||||||||||    
T  320788 ccaacaatgttttccatataaaagtttttcga 320757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 319314 - 319209
Alignment:
Q  77 ccagttcttccctaggactatccttttccattgtaagcgatgatacctcattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctga 176  Q
    |||| ||| ||||| ||||||| |||||||| |||||| |||||  ||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||     
T  319314 ccaggtctgccctaagactatc-ttttccatcgtaagcaatgatgactcat-aatctcaatagggactgtcagcgtcaagtgtgcagttcttccacctgg 319217  T
Q  177 taagagaa 184  Q
    ||| ||||    
T  319216 taatagaa 319209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 320714 - 320686
Alignment:
Q  260 agaaccaacggactccatgatcttgtcat 288  Q
    |||||||||||||||||||||||||||||    
T  320714 agaaccaacggactccatgatcttgtcat 320686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 22844370 - 22844590
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||  || ||||||| ||||||||||||||||||||||| || |||||||||||| |||    
T  22844370 catcggtgcatcattggagcctcatcccaaattatcaactttgctacatgcaccaggtcttccctaggactatccttttcaatcgtaagcgatgatgcct 22844469  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagccaacggacaatgttttacccttcgatctaacagcag 224  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||| |||||| || ||||||||| ||||||||||||| |||||    
T  22844470 cattaatctcaatagggactgtcagcgtcgagtgcgcggttcttccacctagtaagagaagagccaatgggcaatgttttccccttcgatctaatagcag 22844569  T
Q  225 ccgacaatgttttccatataa 245  Q
    |||||||||||||||||||||    
T  22844570 ccgacaatgttttccatataa 22844590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 12780800 - 12780636
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||    
T  12780800 catcggtgcatcattggagcctcatcccaaattatcaactttgtagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgacacct 12780701  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||||| ||| |||| ||||    
T  12780700 cattaatctcaatagggactgtcggcgtcgagtgcgcggttcttccacctggtaatagaagagcc 12780636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 12785654 - 12785490
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||| ||| |||||||||||||||||| |||||||||||  |||    
T  12785654 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatgacgcct 12785555  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||| ||||    
T  12785554 cattaatctcaatagggactgtcagcgtggagtgcgcggttcttccacctgataatagaagagcc 12785490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 9000797 - 9000633
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||||||||||  ||||||||||| |||    
T  9000797 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcatcaggtctgccctaggactatccttttccatcttaagcgatgatgcct 9000698  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||||| |||||||| || ||||| ||||||| ||| |||| ||||    
T  9000697 cattaatctcaatagggactgtcagcgtcgagtgcgcagttctaccacctggtaatagaagagcc 9000633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 42232567 - 42232711
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||    
T  42232567 catcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatgcct 42232666  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttcc 170  Q
    || |||||||||||||||||||||| ||||||||||||||||||||    
T  42232667 ca-taatctcaatagggactgtcagcgtcgagtgtgcggttcttcc 42232711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 7037291 - 7037451
Alignment:
Q  29 ggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatt 128  Q
    |||||||||||||||||||| |||||| ||| |||||||||||| |||  || ||| |||||||||||||||||||||| |||||||||||  |||||||    
T  7037291 ggtgcatcattggagcctcaccccaaattatcaactttgcagcatgcattaggtctgccctaggactatccttttccatcgtaagcgatgacgcctcatt 7037390  T
Q  129 aatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||| | || |||||||||||||||||||||| ||| |||| ||||    
T  7037391 aatctcaatagggactgtcggcgtggagtgtgcggttcttccacctggtaatagaagagcc 7037451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 21069706 - 21069592
Alignment:
Q  33 catcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcattaatc 132  Q
    ||||||||||||||| | | ||| ||| || ||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| ||||| |||||    
T  21069706 catcattggagcctcgttcgaaattatcaagtttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatgcctca-taatc 21069608  T
Q  133 tcaatagggactgtca 148  Q
    ||||||||||||||||    
T  21069607 tcaatagggactgtca 21069592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 12785453 - 12785405
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  12785453 cccttcgatctaacagcagccgacaattttttccatataaaggtttttc 12785405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 7037488 - 7037536
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  7037488 cccttcgatctaacaacagccgacaatcttttccatataaaggtttttc 7037536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 12780599 - 12780551
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  12780599 cccttcgatctaacaacagccgacaatcttttccatataaaggtttttc 12780551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 42232767 - 42232814
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  42232767 cccttcgatctaacagcagccgacaatgtttt-catataaaggtttttc 42232814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 18939186 - 18939232
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttt 252  Q
    ||||||||||||||| || |||||||||||||| ||||||| |||||    
T  18939186 cccttcgatctaacaacaaccgacaatgttttcgatataaaggtttt 18939232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 21069524 - 21069477
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||  |||||||||||| |||||||| |||||||    
T  21069524 cccttcgatctaacagcaatcgacaatgtttt-catataaaggtttttc 21069477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 22844643 - 22844671
Alignment:
Q  260 agaaccaacggactccatgatcttgtcat 288  Q
    |||||||||||||||||||||||||||||    
T  22844643 agaaccaacggactccatgatcttgtcat 22844671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 30881892 - 30882124
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||| ||| | ||| |||||| |  || ||||||| |||||||||||||||||||||||||| |||||||||||| |||    
T  30881892 catcggtgcatcattggagcctcattccatattatcaacttttctacatgcaccaggtcttccctaggactatccttttccatcgtaagcgatgatgcct 30881991  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagccaacggacaatgttttacccttcgatctaacagcag 224  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||| ||||||||| ||||||||| ||||||||||||| |||||    
T  30881992 cattaatctcaatagggactgtcagcgtcgagtgcgcggttcttccaccaggtaagagaagagccaacgggcaatgtttttcccttcgatctaatagcag 30882091  T
Q  225 ccgacaatgttttccatataaaagtttttcgag 257  Q
    ||||||||||||||||||||||  |||||||||    
T  30882092 ccgacaatgttttccatataaatttttttcgag 30882124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 12517841 - 12518005
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||   || ||||||||||||| |||||||| |||||||||||| |||    
T  12517841 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccatgcctgccctaggactatcattttccatcgtaagcgatgatgcct 12517940  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |||| ||||    
T  12517941 cattaatctcaatagggactgtcagcgtcgagtgtacggttcttccacctggtaatagaagagcc 12518005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 2200549 - 2200400
Alignment:
Q  26 atcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctc 125  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||| ||||    
T  2200549 atcggtgcatcattggagcctcattccaaattatcaactttgcagcacgcaccaggtctcccctaggactatctttttccatcgtaagcgatgatgcctc 2200450  T
Q  126 attaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctg 175  Q
    |||||||| ||||||||||||||| |||||||| |||||||||| |||||    
T  2200449 attaatcttaatagggactgtcagcgtcgagtgcgcggttcttcaacctg 2200400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 10188593 - 10188753
Alignment:
Q  29 ggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatt 128  Q
    ||||||||||| ||||||||| ||||| ||| |||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||| |||||||    
T  10188593 ggtgcatcattagagcctcattccaaattatcaactttgcagcacgcaccaggtctgccctacgactatccttttccatcgtaagcgatgatgcctcatt 10188692  T
Q  129 aatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||   || ||||||||||||||||||||| ||| |||| ||||    
T  10188693 aatctcaatagggactgtcaacatcaagtgtgcggttcttccacctggtaatagaagagcc 10188753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 2200349 - 2200304
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagttt 251  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  2200349 cccttcgatctaacagcagccgacaatgttttccatataaatgttt 2200304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 12518042 - 12518090
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  12518042 cccttcgatctaacaacagccgacaatgttttccatataaaggtttttc 12518090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 15334064 - 15334112
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  15334064 cccttcgatctaacagcagccgacaatgttttctatataaaggtttttc 15334112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 18857304 - 18857352
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  18857304 cccttcgatctaacaacagctgacaatgttttccatataaaggtttttc 18857352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 12518134 - 12518162
Alignment:
Q  260 agaaccaacggactccatgatcttgtcat 288  Q
    |||||||||||||||||||||||||||||    
T  12518134 agaaccaacggactccatgatcttgtcat 12518162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 15334156 - 15334184
Alignment:
Q  260 agaaccaacggactccatgatcttgtcat 288  Q
    |||||||||||||||||||||||||||||    
T  15334156 agaaccaacggactccatgatcttgtcat 15334184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 17871291 - 17871070
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||| ||| | ||| |||||| |  || ||||||  |||||||||||||||||||||||||| |||||||||||| |||    
T  17871291 catcggtgcatcattggagcctcattccatattatcaacttttctacatgcaccatgtcttccctaggactatccttttccatcgtaagcgatgatgcct 17871192  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagccaacggacaatgttttacccttcgatctaacagcag 224  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||| ||||||||| ||||||||| ||||||||||||| |||||    
T  17871191 cattaatctcaatagggactgtcagcgtcgagtgcgcggttcttccaccaggtaagagaagagccaacgggcaatgttttgcccttcgatctaatagcag 17871092  T
Q  225 ccgacaatgttttccatataaa 246  Q
    ||||||||||||||||||||||    
T  17871091 ccgacaatgttttccatataaa 17871070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 8428237 - 8428073
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||  |||    
T  8428237 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgacgcct 8428138  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||| ||| |||| ||||    
T  8428137 cattaatctcaatagggactgtcggcgtggagtgcgcggttcttccacctggtaatagaagagcc 8428073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 27881651 - 27881815
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| | | |||||||||||||||||||||| |||||||||||  |||    
T  27881651 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcatcaggtttgccctaggactatccttttccatcgtaagcgatgacgcct 27881750  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||| ||| |||||||||    
T  27881751 cattaatctcaatagggactgtcggcgtggagtgcgcggttcttccacctggtaatagaaaagcc 27881815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 39883742 - 39883906
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||| |||    
T  39883742 catcggtgcatcattggagcctcatcccaaattatcagctttgcagcacgcaccaggtctgccttaggactatccttttccatcgtaagcgatgatgcct 39883841  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||||||| ||||| |||| |||||||| |||||||||||||||| ||| |||| ||||    
T  39883842 cattaatctcaataaggactatcagcgtcgagtgcgcggttcttccacctggtaatagaagagcc 39883906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 3876247 - 3876084
Alignment:
Q  21 acatcatcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgat 120  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| ||||||    
T  3876247 acatcatcggttcatcattggagcctcatcccaaattatcaactttgcagcaggcaccaggtctgccctaggactatccttttccatcgtaagtgatgat 3876148  T
Q  121 acctcattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
     ||||||||||||||||||||||||| ||  ||||||| |||||||||||||||| ||| ||||    
T  3876147 gcctcattaatctcaatagggactgttagcatcgagtgcgcggttcttccacctggtaatagaa 3876084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 37373503 - 37373667
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||  |||    
T  37373503 catcggtgcatcattggagtctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgacgcct 37373602  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| |  | ||||| |||||||||||||||| ||| |||| ||||    
T  37373603 cattaatctcaatagggactgtcggcatggagtgcgcggttcttccacctggtaatagaagagcc 37373667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 3690544 - 3690703
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||| |||    
T  3690544 catcggttcatcattggagcctcatcccaaattatcaactttgcagcaggcaccaggtctgccctaggactatccttttccatcgtaagtgatgatgcct 3690643  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    |||||||||||||||||||||| ||  ||||||| |||||||||||||||| ||| ||||    
T  3690644 cattaatctcaatagggactgttagcatcgagtgcgcggttcttccacctggtaatagaa 3690703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 24629605 - 24629447
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| |||    
T  24629605 catcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcatcaggtcttccctaggactatccttttccatcgtaagcgatgatgcct 24629506  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    || |||||| ||||||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  24629505 ca-taatcttaatagggactgtcagcgtcgagtgtgcggttcttcctcctggtaatagaa 24629447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 37261876 - 37262017
Alignment:
Q  31 tgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcattaa 130  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||| |||  ||||||||||||||||||||| |||||| ||||| |||||||||    
T  37261876 tgcatcattggagcctcatcccaaattatcaactttacagcacgcaccaggtctgtcctaggactatccttttccatcgtaagcaatgatgcctcattaa 37261975  T
Q  131 tctcaatagggactgtcagtgtcgagtgtgcggttcttccac 172  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  37261976 tctcaatagggactgtcagcgtcgagtgcgcggttcttccac 37262017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 25542445 - 25542287
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||||||||||||||||  ||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||    
T  25542445 catcagtgcatcattggagcctcatcttaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatgcct 25542346  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    || ||||||||||||||||| |||| ||||||| ||||||||||||||||| ||| ||||    
T  25542345 ca-taatctcaatagggactatcagcgtcgagtatgcggttcttccacctggtaatagaa 25542287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 14192463 - 14192300
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||| |||    
T  14192463 catcggtgca-cattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagtgatgatgcct 14192365  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
     ||||||||||||||||  ||||||||||||||| |||||| || |||||| ||| |||| ||||    
T  14192364 aattaatctcaatagggtatgtcagtgtcgagtgcgcggttgtttcacctggtaatagaagagcc 14192300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 30346281 - 30346123
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||| ||||| ||||||||||| ||| |||||||||||||||| ||| ||| |||||||||||||||||||||| ||||| |||||| |||    
T  30346281 catcagtgcatcaatggagtctcatcccaaattatcaactttgcagcacgcatcaggtctgccctaggactatccttttccatcgtaagtgatgatgcct 30346182  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    || |||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  30346181 ca-taatctcaatagggactgtcagcgtcgagtgtgcggttcttcctcctggtaatagaa 30346123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 10025545 - 10025689
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||| ||||||||||||||||| ||| ||||||||||||||||| || ||| ||| |||||||||||||||||| |||||||||||| |||    
T  10025545 catcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcactaggtctgccccaggactatccttttccatcgtaagcgatgatgcct 10025644  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttcc 170  Q
    || |||||||||||||||| ||||   |||||||||||||||||||    
T  10025645 ca-taatctcaatagggaccgtcaacttcgagtgtgcggttcttcc 10025689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 39883946 - 39883991
Alignment:
Q  209 ttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  39883946 ttcgatctaacagcagccgacaatgttttccatataaaggtttttc 39883991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 8428036 - 8427988
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  8428036 cccttcgatctaacagcagccgacaatcttttccatataaaggtttttc 8427988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 27881852 - 27881900
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  27881852 cccttcgatctaacagcagccgacaatcttttccatataaaggtttttc 27881900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 37373704 - 37373752
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  37373704 cccttcgatctaacagcagccgacaatcttttccatataaaggtttttc 37373752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 14192263 - 14192215
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  14192263 cccttcgatctaacagcaaccgacaatgtttttcatataaaggtttttc 14192215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 10025745 - 10025792
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||||||    
T  10025745 cccttcgatctaatagcagccgacaatgtttt-catataaaggtttttc 10025792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 30346081 - 30346034
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  30346081 cccttcgatctaacagcagccgactatgtttt-catataaaggtttttc 30346034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 24629411 - 24629366
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttt 252  Q
    ||||| |||||||||||||||||||||||||| |||||||| |||||    
T  24629411 cccttagatctaacagcagccgacaatgtttt-catataaaggtttt 24629366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 25542245 - 25542198
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||| ||||||| |||||||||||||||| |||||||| |||||||    
T  25542245 cccttcggtctaacaacagccgacaatgtttt-catataaaggtttttc 25542198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 48612 - 48448
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||||  |||    
T  48612 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgcccaaggactatccttttccatcgtaagcgatgacgcct 48513  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||||||| |||| ||||    
T  48512 cattaatctcaatagggactgtcggcgtggagtgcgcggttcttccacctgataatagaagagcc 48448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 48411 - 48363
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  48411 cccttcgatctaacagcagccgacaattttttccatataaaggtttttc 48363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 25218217 - 25218053
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||  |||    
T  25218217 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgacgcct 25218118  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||| ||| |||| ||||    
T  25218117 cattaatctcaatagggactgtcggcgtggagtgcgcggttcttccacctggtaatagaagagcc 25218053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 30326042 - 30326206
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||| ||||||||||||| |||||||| |||||||||||  |||    
T  30326042 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcatgcaccaggtctgccctaggactatcattttccatcgtaagcgatgacgcct 30326141  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||||||||||||| || | || ||||| |||||||||||||||| ||| |||| ||||    
T  30326142 cattaatctcaatagggactatcggcgtggagtgcgcggttcttccacctggtaatagaagagcc 30326206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 21113396 - 21113238
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||| |||    
T  21113396 catcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgtcctaggactatccttttccatcgtaagcgatgatgcct 21113297  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    || |||||||||||||||||||||  |||||||||||||||||||| |||| ||| ||||    
T  21113296 ca-taatctcaatagggactgtcaacgtcgagtgtgcggttcttcctcctggtaatagaa 21113238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 25208699 - 25208535
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||| |||||||| ||| ||| |||||||||| ||||||||||| |||||||||||  |||    
T  25208699 catcggtgcatcattggagtctcatcccaaattatcaactttggagcacgcatcaggtctgccctaggactttccttttccatcgtaagcgatgacgcct 25208600  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | || ||| | |||||||||||||||| ||| |||| ||||    
T  25208599 cattaatctcaatagggactgtcggcgtggagcgcgcggttcttccacctggtaatagaagagcc 25208535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 7822405 - 7822534
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||| || ||| | |||||||||  |||    
T  7822405 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatcctctttcatcgcaagcgatgacgcct 7822504  T
Q  125 cattaatctcaatagggactgtcagtgtcg 154  Q
    ||||||||||||||||||||||||| ||||    
T  7822505 cattaatctcaatagggactgtcagcgtcg 7822534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 25218016 - 25217968
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  25218016 cccttcgatctaacagcagccgacaatcttttccatataaaggtttttc 25217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 30326243 - 30326291
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  30326243 cccttcgatctaacagcagccgacaatcttttccatataaaggtttttc 30326291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 7822603 - 7822648
Alignment:
Q  209 ttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||||    
T  7822603 ttcgatctaacagcaaccgacaatgttttccgtataaaggtttttc 7822648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 21113193 - 21113149
Alignment:
Q  209 ttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  21113193 ttcgatctaacagcagccgacaatgtttt-catataaaggtttttc 21113149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 7822691 - 7822719
Alignment:
Q  260 agaaccaacggactccatgatcttgtcat 288  Q
    |||||||||||||||||||||||||||||    
T  7822691 agaaccaacggactccatgatcttgtcat 7822719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 35856474 - 35856638
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||  |||    
T  35856474 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgacgcct 35856573  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||| ||| |||| ||||    
T  35856574 cattaatctcaatagggactgtcggcgtggagtgcgcggttcttccacctggtaatagaagagcc 35856638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 49786504 - 49786340
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||| ||| |||||||||||||||||| |||||||||||  |||    
T  49786504 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatgacgcct 49786405  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||||||| |||| ||||    
T  49786404 cattaatctcaatagggactgtcggcgtggagtgcgcggttcttccacctgataatagaagagcc 49786340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 55558775 - 55558631
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||    
T  55558775 catcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatgcct 55558676  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttcc 170  Q
    || |||||||||||||||||||||| ||||||||||||||||||||    
T  55558675 ca-taatctcaatagggactgtcagcgtcgagtgtgcggttcttcc 55558631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 13344502 - 13344666
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||  |||    
T  13344502 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgacgcct 13344601  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||||||||||||| || | || |||||  ||||||||||||||| ||| |||| ||||    
T  13344602 cattaatctcaatagggactatcggcgtggagtgcacggttcttccacctggtaatagaagagcc 13344666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 49710739 - 49710903
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| || ||| |||||||||||||||||| |||  ||||||||||| |||    
T  49710739 catcgatgcatcattggagcctcatcccaaattatcaactttgcagcacgcacaaggtctgccctaggactatccttttgcatcttaagcgatgatgcct 49710838  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    | ||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||| ||||    
T  49710839 cgttaatctcaatagggactgtcagcgtcgagtgcgcggttcttccacctggtaatagaagagcc 49710903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 13337802 - 13337921
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||  |||    
T  13337802 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgacgcct 13337901  T
Q  125 cattaatctcaatagggact 144  Q
    ||||||||||||||||||||    
T  13337902 cattaatctcaatagggact 13337921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 49710940 - 49710988
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49710940 cccttcgatctaacagcagccgacaatgttttccatataaaggtttttc 49710988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 13344703 - 13344751
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  13344703 cccttcgatctaacagcagccgacaatcttttccatataaaggtttttc 13344751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 35856675 - 35856723
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  35856675 cccttcgatctaacagcagccgacaatcttttccatataaaggtttttc 35856723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 49786303 - 49786255
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  49786303 cccttcgatctaacaacagccgacaatcttttccatataaaggtttttc 49786255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 5337059 - 5337107
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| ||||| || |||||||||||||||| |||||||    
T  5337059 cccttcgatctaacaacagccaacgatgttttccatataaaggtttttc 5337107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 55558575 - 55558528
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  55558575 cccttcgatctaacagcagcggacaatgtttt-catataaaggtttttc 55558528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 28665848 - 28665684
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||| ||| |||||||||||||||||| |||||||||||  |||    
T  28665848 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatgacgcct 28665749  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||| ||||    
T  28665748 cattaatctcaatagggactgtcagcgtggagtgcgcggttcttccacctgataatagaagagcc 28665684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 37824682 - 37824518
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||| ||| |||||||||||||||||| |||||||||||  |||    
T  37824682 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatgacgcct 37824583  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||| ||||    
T  37824582 cattaatctcaatagggactgtcagcgtggagtgcgcggttcttccacctgataatagaagagcc 37824518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 41919849 - 41919685
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||  |||    
T  41919849 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgacgcct 41919750  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||  | || ||||| |||||||||||||||||||| |||| ||||    
T  41919749 cattaatctcaatagggactgttggcgtggagtgcgcggttcttccacctgataatagaagagcc 41919685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 24246392 - 24246554
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||||||||||||||||  ||| ||| |||||||||||||||||||  ||| |||||||||||||||||||||| |||||||||||| |||    
T  24246392 catcagtgcatcattggagcctcatc--aaattatcaactttgcagcacgcaccaagtctgccctaggactatccttttccatcgtaagcgatgatgcct 24246489  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||    
T  24246490 cattaatctcaatagggactgtcagcgtcgagtgtgcggttcttccacctggtaatagaagagcc 24246554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 21395937 - 21396101
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||||||||  |||  ||||||||||| |||    
T  21395937 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaagtctgccctaggactatcctttagcatcttaagcgatgatgcct 21396036  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||||| |||||||||||| | |||||| |||||||||||||||| ||| |||| ||||    
T  21396037 cattaatctcaacagggactgtcagcgccgagtgcgcggttcttccacctggtaatagaagagcc 21396101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 27509941 - 27510105
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||||||||||||||| |||||||||| ||| ||| |||||||||||| ||||||| ||| ||||||| || ||||||| ||| |||||| ||||| |||    
T  27509941 catcggtgcatcattgaagcctcatcctaaattatcaactttgcagcatgcaccagatctgccctaggtctgtccttttgcatcgtaagcaatgatgcct 27510040  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||| ||||    
T  27510041 cattaatctcaatagggactgtcagtgtcgagtgcgaggttcttccacctggtaatagaagagcc 27510105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 27193056 - 27193205
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| ||  ||||||||||||||||||||||  ||||||||||| |||    
T  27193056 catcggtgcatcattggagcctcatcccaaattatcaattttgcagcacgcaccaggtcagccctaggactatccttttccatcataagcgatgatgcct 27193155  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctg 175  Q
    |||||||||||||| ||| ||| || || ||||||||||||||||||||||    
T  27193156 cattaatctcaata-ggaatgtaagcgttgagtgtgcggttcttccacctg 27193205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 27842870 - 27843019
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| ||  ||||||||||||||||||||||  ||||||||||| |||    
T  27842870 catcggtgcatcattggagcctcatcccaaattatcaattttgcagcacgcaccaggtcagccctaggactatccttttccatcataagcgatgatgcct 27842969  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctg 175  Q
    |||||||||||||| ||| ||| || || ||||||||||||||||||||||    
T  27842970 cattaatctcaata-ggaatgtaagcgttgagtgtgcggttcttccacctg 27843019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 17683561 - 17683401
Alignment:
Q  29 ggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatt 128  Q
    ||||||||||| ||||||||| ||||| ||| |||||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| |||||||    
T  17683561 ggtgcatcattagagcctcattccaaattatcaactttgcagcacgcaccaggtctgccctacgactatcctttttcatcgtaagcgatgatgcctcatt 17683462  T
Q  129 aatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||| |||||||||||||   || |||||||||||||||||| |||||| |||| ||||    
T  17683461 aatctcgatagggactgtcaacatcaagtgtgcggttcttccacatgataatagaagagcc 17683401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 24268722 - 24268564
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||| ||||||| |||  |||||||||||| |||||||| |||||||||||| |||    
T  24268722 catcagtgcatcagtggagcctcatcccaaattatcaactttgcagcatgcaccaggtctgtcctaggactatcattttccatcgtaagcgatgatgcct 24268623  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    ||  ||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  24268622 ca-aaatctcaatagggactgtcagcgtcgagtgtgcggttcttcctcctggtaatagaa 24268564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 35610220 - 35610383
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||| || ||||||||||||||||||| ||||| |||||| |||    
T  35610220 catcggtgca-cattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccttaggactatccttttccatcgtaagtgatgatgcct 35610318  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
     ||||||||||||| ||  |||||| ||||| || |||||| || |||||| ||| |||| ||||    
T  35610319 aattaatctcaataaggtatgtcagcgtcgactgcgcggttgtttcacctggtaatagaagagcc 35610383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 21396138 - 21396186
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21396138 cccttcgatctaacagcagccgacaatgttttccatataaaggtttttc 21396186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 28665647 - 28665599
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  28665647 cccttcgatctaacagcagccgacaattttttccatataaaggtttttc 28665599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 37824481 - 37824433
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  37824481 cccttcgatctaacagcagccgacaattttttccatataaaggtttttc 37824433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 41919648 - 41919600
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  41919648 cccttcgatctaacagcagccgacaatcttttccatataaaggtttttc 41919600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 27193256 - 27193304
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||    
T  27193256 cccttcgatctaacaacatccgacaatgttttccatataaaggtttttc 27193304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 27843070 - 27843118
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||    
T  27843070 cccttcgatctaacaacatccgacaatgttttccatataaaggtttttc 27843118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 24268519 - 24268475
Alignment:
Q  209 ttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  24268519 ttcgatctaacagcagccgacaatgtttt-catataaaggtttttc 24268475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 24246591 - 24246643
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttcgagt 258  Q
    |||||||||||||||  ||| ||||||||||| |||||||| |||||||||||    
T  24246591 cccttcgatctaacattagctgacaatgtttttcatataaaggtttttcgagt 24246643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 27510142 - 27510190
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||| |||||||||| ||| ||||||||||||||||||||| |||||||    
T  27510142 ccctccgatctaacaacagtcgacaatgttttccatataaaggtttttc 27510190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 35610420 - 35610460
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaa 246  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  35610420 cccttcgatctaacagcaaccgacaatgtttttcatataaa 35610460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 27193348 - 27193376
Alignment:
Q  260 agaaccaacggactccatgatcttgtcat 288  Q
    |||||||||||||||||||||||||||||    
T  27193348 agaaccaacggactccatgatcttgtcat 27193376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 27843162 - 27843190
Alignment:
Q  260 agaaccaacggactccatgatcttgtcat 288  Q
    |||||||||||||||||||||||||||||    
T  27843162 agaaccaacggactccatgatcttgtcat 27843190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 35610512 - 35610540
Alignment:
Q  260 agaaccaacggactccatgatcttgtcat 288  Q
    |||||||||||||||||||||||||||||    
T  35610512 agaaccaacggactccatgatcttgtcat 35610540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 183378 - 183537
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||    
T  183378 catcggtacatcattggagcctaatcccaaattattaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatgcct 183477  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    |||||||||||||||||||||  || |||||||| |||||||||||||||| ||| ||||    
T  183478 cattaatctcaatagggactggtagcgtcgagtgcgcggttcttccacctggtaatagaa 183537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 183579 - 183619
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaa 246  Q
    |||||||||||||||||| |  |||||||||||||||||||    
T  183579 cccttcgatctaacagcaactaacaatgttttccatataaa 183619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 10968434 - 10968275
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||  |||    
T  10968434 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgacgcct 10968335  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    ||||||||||||||||||||||| | |||||||| || ||||||||||||| ||| ||||    
T  10968334 cattaatctcaatagggactgtcggcgtcgagtgcgcagttcttccacctggtaatagaa 10968275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 33338 - 33502
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||    
T  33338 catcggtgcatcatcggagcctcatcccaaattatcaactatgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatgcct 33437  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||| ||| |||| ||||    
T  33438 cattaatctcaatagggactgtcggcgtggagtgcgcggttcttccacctggtaatagaagagcc 33502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 52918593 - 52918757
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||||||   ||    
T  52918593 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctaccctaggattatccttttccatcgtaagcgatgacggct 52918692  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||||| ||| |||| ||||    
T  52918693 cattaatctcaataaggactgtcagcgtcgagtgcgcggttcttccacctggtaatagaagagcc 52918757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 50410739 - 50410894
Alignment:
Q  29 ggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatt 128  Q
    |||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||| ||    
T  50410739 ggtgcatcattggagcctcatcacaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatgcctcctt 50410838  T
Q  129 aatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    |||||||||||||| ||  ||||||||||| |||||||||||||||| ||| ||||    
T  50410839 aatctcaatagggattgctagtgtcgagtgcgcggttcttccacctggtaatagaa 50410894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 10000974 - 10001132
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||||||||||||| ||||| |||||| |||    
T  10000974 catcagtgcatcattagagcctcatcccaaattatcaactttgcagcacgcaccaagtctgccctaggactatccttttccatcgtaagagatgattcct 10001073  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    || ||||||||| |||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  10001074 ca-taatctcaacagggactgtcagcgtcgagtgtgcggttcttcctcctgctaatagaa 10001132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 13530610 - 13530765
Alignment:
Q  29 ggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatt 128  Q
    |||| ||||| ||||||| |||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||| |||||||    
T  13530610 ggtgtatcatcggagccttatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttctatcgtaagcgatgatgcctcatt 13530709  T
Q  129 aatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    |||||||||||||||| |||||||||||||  |||||||| |||||| ||| ||||    
T  13530710 aatctcaatagggactatcagtgtcgagtgcacggttctttcacctggtaatagaa 13530765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 10111167 - 10111325
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||||||||||||| ||||| |||||| |||    
T  10111167 catcagtgcatcattagagcctcatcccaaattatcaactttgcagcacgcaccaagtctgccctaggactatccttttccatcgtaagagatgatgcct 10111266  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    || |||||||||||||||||||||| |||  ||||||||||||||| |||| ||| ||||    
T  10111267 ca-taatctcaatagggactgtcagcgtcaggtgtgcggttcttcctcctgctaatagaa 10111325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 11369206 - 11369364
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||| ||| || |||||||||||||||||||  ||||||||||| |||    
T  11369206 catcggtgcatcattggagcctcatcccaaattatcaactttgaagcatgcaccaggtctgcc-taggactatccttttccatcttaagcgatgatgcct 11369304  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    |||||||||||| ||||||||| || ||||||||  ||||||||||||||| ||| ||||    
T  11369305 cattaatctcaacagggactgttagcgtcgagtgcacggttcttccacctggtaatagaa 11369364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 10039197 - 10039333
Alignment:
Q  36 cattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcattaatctca 135  Q
    |||||||||| ||||||||| ||| || ||| ||| ||||||||| ||| ||||| |||||||||| ||||  |||||||||||| ||||||||||||||    
T  10039197 cattggagccccatcccaaattatcaattttacagtacgcaccaggtctgccctatgactatccttctccagcgtaagcgatgatgcctcattaatctca 10039296  T
Q  136 atagggactgtcagtgtcgagtgtgcggttcttccac 172  Q
    |||||||||||||| |||||||| |||||||||||||    
T  10039297 atagggactgtcagcgtcgagtgcgcggttcttccac 10039333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 10244920 - 10245010
Alignment:
Q  93 actatccttttccattgtaagcgatgatacctcattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    ||||||||||| ||| ||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  10244920 actatccttttacatcgtaagagatgatgcctcat-aatctcaatagggactgtcagcgtcgagtgtgcggttcttcctcctgctaatagaa 10245010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 10238121 - 10238194
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatc 98  Q
    |||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||    
T  10238121 catcagtgcatcattagagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatc 10238194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 10113317 - 10113384
Alignment:
Q  122 cctcattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||| |||||||||||||| ||||||||||| |||||||||| ||||| ||| |||| ||||    
T  10113317 cctcattaatatcaatagggactgttagtgtcgagtgcgcggttcttcgacctggtaatagaagagcc 10113384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 10250421 - 10250488
Alignment:
Q  122 cctcattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||| |||||||||||||| ||||||||||| |||||||||| ||||| ||| |||| ||||    
T  10250421 cctcattaatatcaatagggactgttagtgtcgagtgcgcggttcttcgacctggtaatagaagagcc 10250488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 27275059 - 27275127
Alignment:
Q  115 gatgatacctcattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    |||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  27275059 gatgatgcctcat-aatcttaatagggactgtcagcgtcgagtgtgcggttcttcctcctggtaatagaa 27275127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 50410939 - 50410984
Alignment:
Q  209 ttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||    
T  50410939 ttcgatctaacagcagtcgacaatgttttccatataaaggtttttc 50410984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 10245052 - 10245099
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  10245052 cccttcgatctaacagcagccgacaatgtttt-catataaaggtttttc 10245099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 33542 - 33587
Alignment:
Q  209 ttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||||    
T  33542 ttcgatctaacagtagccgacaatcttttccatataaaggtttttc 33587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 10111367 - 10111414
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||||    
T  10111367 cccttcgatctaacagcagtcgacaatgtttt-catataaaggtttttc 10111414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 11369406 - 11369446
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaa 246  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  11369406 cccttcgatctaacagcaactgacaatgttttccatataaa 11369446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 13530807 - 13530855
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||| ||||||  |||||||||||||||||||||||| |||||||    
T  13530807 cccttcgagctaacaatagccgacaatgttttccatataaatgtttttc 13530855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 27275163 - 27275210
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  27275163 cccttagatctaacagcagccgacaatgtttt-catataaaggtttttc 27275210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 46913247 - 46913295
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||| ||||||||| ||||||||| ||||||||||||||| |||||||    
T  46913247 cccttggatctaacaacagccgacagtgttttccatataaaggtttttc 46913295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 10013721 - 10013783
Alignment:
Q  122 cctcattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    |||||||||| |||||||||||| | |||||||| || |||||||||| ||||| ||| ||||    
T  10013721 cctcattaatatcaatagggactattagtgtcgaatgcgcggttcttcgacctggtaatagaa 10013783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 10001174 - 10001221
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| ||| |||||||||||| |||||||| |||||||    
T  10001174 cccttcgatctaacaacagtcgacaatgtttt-catataaaggtttttc 10001221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 10968233 - 10968185
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||| | ||||||||||| |||| |||||||| |||||||    
T  10968233 cccttcgatctaatatcagccgacaatctttttcatataaaggtttttc 10968185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 32499 - 32663
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||    
T  32499 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaagactatccttttccattgtaagcgatgatgcct 32598  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||| || |||| |||||||   ||||||||||||||| ||| |||| ||||    
T  32599 cattaatctcaatagggtctatcagcgtcgagtacacggttcttccacctggtaatagaagagcc 32663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 322 - 482
Alignment:
Q  29 ggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatt 128  Q
    |||||||||||||||||||| |||||| ||| |||||||||||| |||  || ||| |||||||||||||||||||||| |||||||||||  |||||||    
T  322 ggtgcatcattggagcctcaccccaaattatcaactttgcagcatgcattaggtctgccctaggactatccttttccatcgtaagcgatgacgcctcatt 421  T
Q  129 aatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||| | || |||||||||||||||||||||| ||| |||| ||||    
T  422 aatctcaatagggactgtcggcgtggagtgtgcggttcttccacctggtaatagaagagcc 482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 32700 - 32748
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  32700 cccttcgatctaatagcagccgacaatgttttccatataaaggtttttc 32748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 519 - 567
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||| ||| ||||||| ||||||||||||| |||||||    
T  519 cccttcgatctaacaacagacgacaatattttccatataaaggtttttc 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 288
Target Start/End: Original strand, 32789 - 32820
Alignment:
Q  257 gttagaaccaacggactccatgatcttgtcat 288  Q
    ||||||||||||||||||||||||||||||||    
T  32789 gttagaaccaacggactccatgatcttgtcat 32820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 28371 - 28227
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||    
T  28371 catcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatgcct 28272  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttcc 170  Q
    || |||||||||||||||||||||| ||||||||||||||||||||    
T  28271 ca-taatctcaatagggactgtcagcgtcgagtgtgcggttcttcc 28227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 28171 - 28124
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  28171 cccttcgatctaacagcagccgacaatgtttt-catataaaggtttttc 28124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 16042592 - 16042749
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||    
T  16042592 catcggtgcatcatttgagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatgcct 16042691  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    |||||  |||||||||||||||||| ||||||||  ||||||||||||||| ||| ||||    
T  16042692 catta--ctcaatagggactgtcagcgtcgagtgcacggttcttccacctggtaatagaa 16042749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 52501144 - 52501302
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| |||    
T  52501144 catcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcatcaggtcttccctaggactatccttttccatcgtaagcgatgatgcct 52501243  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    || |||||| ||||||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  52501244 ca-taatcttaatagggactgtcagcgtcgagtgtgcggttcttcctcctggtaatagaa 52501302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 37389795 - 37389640
Alignment:
Q  34 atcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcattaatct 133  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  37389795 atcattggagtctcatcccaaattatcaactttgcagcacgcaccaggtctgccctgggactatccttttccattgtaagcgatgacacctcattaatct 37389696  T
Q  134 caatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||||||| | || ||||| ||| |||||||||||| ||| |||| ||||    
T  37389695 caatagggactgtcggcgtggagtgcgcgattcttccacctggtaatagaagagcc 37389640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 6310646 - 6310482
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||| ||| |||||||||||||||||||||| ||||||||| |  |||    
T  6310646 catcggtgcatcattggagcctcatcccaaattatcaactttgcagcatgcatcaggtctgccctaggactatccttttccatcgtaagcgataacgcct 6310547  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||||||||||| |||||||||| | || ||||| |||||||||||||||| ||| |||| ||||    
T  6310546 cattaatctcaaaagggactgtcggcgtggagtgcgcggttcttccacctggtaatagaagagcc 6310482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 2329737 - 2329892
Alignment:
Q  29 ggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatt 128  Q
    ||||||||||||||| |||||   ||| ||| ||||||||||||| |||||| ||| |||||||||| ||||||||||| |||||||||||| |||| ||    
T  2329737 ggtgcatcattggagactcataaaaaattatcaactttgcagcacacaccaggtctgccctaggactgtccttttccatagtaagcgatgatgcctcctt 2329836  T
Q  129 aatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||    
T  2329837 aatctcaatagggactgccagtttcgagtgtgcggttcttccacctggtaatagaa 2329892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 36207787 - 36207946
Alignment:
Q  30 gtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatta 129  Q
    |||||| ||||||||||||||||||| ||| ||| |||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||| |||| |||    
T  36207787 gtgcatgattggagcctcatcccaaattatcaacgttgcagcacgcaccaggtctaccctaggactattcttttccatcgtaagcgatgatgcctcgtta 36207886  T
Q  130 atctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    |||| ||||||||||||| | ||||||||   | |||||||||||| ||| |||||||||    
T  36207887 atcttaatagggactgtcggcgtcgagtgcatgattcttccacctggtaatagaaaagcc 36207946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 2452769 - 2452690
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttct-tccctaggactatcctttt 103  Q
    ||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||| |||  ||||||||||||||||||    
T  2452769 catcggtgcatcattggagcctcatcccaaattatcaacattacagcacgcaccaggtctgcccctaggactatcctttt 2452690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 48774987 - 48774920
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctagg 92  Q
    |||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||| ||| |||||||    
T  48774987 catcggtgcatcattggagcctcatcacaaattatcaactttgaagcacgcaccaggtctgccctagg 48774920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 36207983 - 36208030
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagttttt 253  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  36207983 cccttcgatctaacaacagccgacaatgttttccatataaaggttttt 36208030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 16042794 - 16042839
Alignment:
Q  209 ttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||||||||||||||||||||||  |||||||    
T  16042794 ttcgatctaacagcagccgacaatgttttccatataatggtttttc 16042839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 6310445 - 6310397
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||||||    
T  6310445 cccttcgatctaacagcaaccgacaatcttttccatataaaggtttttc 6310397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 52501338 - 52501385
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  52501338 cccttagatctaacagcagccgacaatgtttt-catataaaggtttttc 52501385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 288
Target Start/End: Original strand, 36208073 - 36208104
Alignment:
Q  257 gttagaaccaacggactccatgatcttgtcat 288  Q
    ||||||||||||||||||||||||||||||||    
T  36208073 gttagaaccaacggactccatgatcttgtcat 36208104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 2329937 - 2329982
Alignment:
Q  209 ttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||| |||||  |||||||||||||||||||| |||||||    
T  2329937 ttcgatctaatagcagttgacaatgttttccatataaaggtttttc 2329982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 4912 - 4754
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||| |||    
T  4912 catcagtgcatcattggatcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttctatcgtaagcgatgatgcct 4813  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    || |||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  4812 ca-taatctcaatagggactgtcagggtcgagtgtgcggttcttcctcctggtaatagaa 4754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 4712 - 4665
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  4712 cccttcgatctaacagcagccgacaatgtttt-catataaaggtttttc 4665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 13924 - 13771
Alignment:
Q  30 gtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatta 129  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| ||||| |||||||||||||||| |||||| ||||| ||||| ||    
T  13924 gtgcatcattggagcctcatcccaaattatcatctttgcagcacgcaccaggtctgccctaagactatccttttccatcgtaagcaatgatgcctca-ta 13826  T
Q  130 atctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  13825 atctcaatagggactgtcagtgtcgagtgtgcgattcttccacctggtaatagaa 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 1584 - 1748
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    ||||||||||||||| |||||||| || ||| |||||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||| |||    
T  1584 catcggtgcatcatttgagcctcaaccaaaattattaactttgcagcacgcaccaggtctgccctaggactatcctttttcattttaagcgatgatgcct 1683  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||| |||||||||||||| |||||||||||  ||||||||| ||||| ||| |||| ||||    
T  1684 cattaatatcaatagggactgttagtgtcgagtgcccggttcttcgacctggtaatagaagagcc 1748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 42542 - 42706
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||  | | ||||| ||||||||||||||||  ||||||||||| |||    
T  42542 catcagtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaagtatgccctaagactatccttttccatcttaagcgatgatgcct 42641  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||||| ||| |||| ||||    
T  42642 cattaatctcaatagggactgtcggcgtcgagtgcgcggttcttccacctggtaatagaagagcc 42706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 42743 - 42791
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    |||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  42743 cccttcgatctaacagcagccgacaatgcttttcatataaaggtttttc 42791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 19572 - 19730
Alignment:
Q  25 catcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacct 124  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||  |||| |||||||||||||||| |||||||||||| |||    
T  19572 catcagtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgacctaagactatccttttccatcgtaagcgatgatgcct 19671  T
Q  125 cattaatctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    || ||||||||||||||| |||||  |||||||||||||||||||| |||| ||| ||||    
T  19672 ca-taatctcaatagggaatgtcaaagtcgagtgtgcggttcttcctcctggtaatagaa 19730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 19772 - 19819
Alignment:
Q  206 cccttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||||  |||||||||||||||| |||||||| |||||||    
T  19772 cccttcgatctaactacagccgacaatgtttt-catataaaggtttttc 19819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 215 - 56
Alignment:
Q  30 gtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatta 129  Q
    ||||||||||||||||| | |||||| ||| |||||||||||||||||| | ||| ||||| |||||||||||||||| |||||||||||| |||| |||    
T  215 gtgcatcattggagccttaacccaaattatcaactttgcagcacgcacctggtctgccctaagactatccttttccatcgtaagcgatgatgcctcgtta 116  T
Q  130 atctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaaaagcc 189  Q
    || ||||||| ||||||||| |||||||| |||||||||||||||| ||| |||| ||||    
T  115 atttcaatagagactgtcagcgtcgagtgcgcggttcttccacctggtaatagaagagcc 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 187126 - 187277
Alignment:
Q  30 gtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatacctcatta 129  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||||||| |   |||||||||||||||||||||| |||||||||||| | |||| |    
T  187126 gtgcatcattggagcctcatctcaaattatcaactttgcagcacgcaccaggtg--ccctaggactatccttttccatcgtaagcgatgatgcgtcat-a 187222  T
Q  130 atctcaatagggactgtcagtgtcgagtgtgcggttcttccacctgataagagaa 184  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  187223 atctcaatagggactgtcagcgtcgagtgtgcagttcttccacctggtaatagaa 187277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 187321 - 187366
Alignment:
Q  208 cttcgatctaacagcagccgacaatgttttccatataaaagtttttc 254  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||    
T  187321 cttcgatctaacaacagccgacaatgtttt-catataaaggtttttc 187366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

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