View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0082_low_2 (Length: 252)
Name: NF0082_low_2
Description: NF0082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0082_low_2
[» ] chr6 (1 HSPs)
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 6685830 - 6686052
Alignment:
Q
30
ttaaggtgtctttattgtaactgtctatagacggcaatgccaacttcttcaacaagctaaaggaatcttcataacttaatcccttcaaatgtaatagaga
129
Q
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
T
6685830
ttaaggtgtctttctcgtaactgtctatagacggcaatgccaacttcttcaacaagctaaaggaatcttcataacttaatcccttcaaatgaaatagaga
6685929
T
Q
130
gttgactccaatttcctcggccacaattctacaacgagttgtcaatagaaatcttagtttcgcaagccaccccacacatcaaagaacttgtgagttgatt
229
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
6685930
gttgactccaatttcctcggccacaattctacaacgagttgtcaatagaaatcttagtttcgcaagccaccccacacatcaaagaacttgtgagttgatt
6686029
T
Q
230
ccatttttcacaagtcaagtttc
252
Q
|||||||||||||||||||||||
T
6686030
ccatttttcacaagtcaagtttc
6686052
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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