View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0082_low_4 (Length: 250)
Name: NF0082_low_4
Description: NF0082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0082_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 20998944 - 20998720
Alignment:
| Q |
22 |
atcatcacctcggctacacttaatttatctctgtgtttgttcttgacagctcaaaactctatctcatacaacattgtcggtcttacagctgtcctgtaaa |
121 |
Q |
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| T |
20998944 |
atcatcacctcggctacgcttaatttatctctatgtttgttcttgacagctcaaaactctatctcatacaacatcgtcagtcttacagctgtcctgtaaa |
20998845 |
T |
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| Q |
122 |
attttcctttaaagttaagtggttttttaacctagcaacaacaataaaattaaaattggaacatcaaacgaccttatactgaatcttaatctgttgctcg |
221 |
Q |
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| T |
20998844 |
attttcctatc----taagtggttttttaacctagcaacaacaataatattaaaattggaacatcaaacaaccttatactgaatcttaatctgttgctca |
20998749 |
T |
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| Q |
222 |
gtccttccacacgcctcggcaagcgcctt |
250 |
Q |
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| T |
20998748 |
gtccttccacacgcctcggcaagcgcctt |
20998720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 11389588 - 11389545
Alignment:
| Q |
86 |
catacaacattgtcggtcttacagctgtcctgtaaaattttcct |
129 |
Q |
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| T |
11389588 |
catacaacattgtcggtcttacaactgtccgataaaattttcct |
11389545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 55244169 - 55244128
Alignment:
| Q |
87 |
atacaacattgtcggtcttacagctgtcctgtaaaattttcc |
128 |
Q |
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| T |
55244169 |
atacaacattgtcggtcttacagctgtcagataaaattttcc |
55244128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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