View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0082_low_4 (Length: 250)
Name: NF0082_low_4
Description: NF0082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0082_low_4
[» ] chr4 (2 HSPs)
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 20998944 - 20998720
Alignment:
Q
22
atcatcacctcggctacacttaatttatctctgtgtttgttcttgacagctcaaaactctatctcatacaacattgtcggtcttacagctgtcctgtaaa
121
Q
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
T
20998944
atcatcacctcggctacgcttaatttatctctatgtttgttcttgacagctcaaaactctatctcatacaacatcgtcagtcttacagctgtcctgtaaa
20998845
T
Q
122
attttcctttaaagttaagtggttttttaacctagcaacaacaataaaattaaaattggaacatcaaacgaccttatactgaatcttaatctgttgctcg
221
Q
|||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
T
20998844
attttcctatc----taagtggttttttaacctagcaacaacaataatattaaaattggaacatcaaacaaccttatactgaatcttaatctgttgctca
20998749
T
Q
222
gtccttccacacgcctcggcaagcgcctt
250
Q
|||||||||||||||||||||||||||||
T
20998748
gtccttccacacgcctcggcaagcgcctt
20998720
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 11389588 - 11389545
Alignment:
Q
86
catacaacattgtcggtcttacagctgtcctgtaaaattttcct
129
Q
||||||||||||||||||||||| |||||| ||||||||||||
T
11389588
catacaacattgtcggtcttacaactgtccgataaaattttcct
11389545
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 55244169 - 55244128
Alignment:
Q
87
atacaacattgtcggtcttacagctgtcctgtaaaattttcc
128
Q
|||||||||||||||||||||||||||| |||||||||||
T
55244169
atacaacattgtcggtcttacagctgtcagataaaattttcc
55244128
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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