View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0082_low_5 (Length: 248)

Name: NF0082_low_5
Description: NF0082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0082_low_5
NF0082_low_5
[»] chr7 (16 HSPs)
chr7 (29-248)||(15873233-15873451)
chr7 (29-248)||(10288047-10288266)
chr7 (29-248)||(11035641-11035858)
chr7 (29-213)||(13163530-13163714)
chr7 (74-248)||(22078358-22078531)
chr7 (74-248)||(12911034-12911207)
chr7 (74-213)||(12196057-12196195)
chr7 (74-248)||(40106542-40106715)
chr7 (74-223)||(48653131-48653278)
chr7 (74-248)||(49169641-49169815)
chr7 (78-248)||(9994053-9994220)
chr7 (147-246)||(21490863-21490962)
chr7 (147-248)||(18366701-18366802)
chr7 (172-248)||(9554543-9554619)
chr7 (147-179)||(1322294-1322326)
chr7 (29-99)||(24053092-24053164)
[»] chr6 (10 HSPs)
chr6 (29-248)||(34636918-34637136)
chr6 (29-248)||(10750886-10751104)
chr6 (29-248)||(32449523-32449741)
chr6 (34-248)||(26181955-26182168)
chr6 (29-248)||(23259887-23260126)
chr6 (87-248)||(13772725-13772885)
chr6 (147-248)||(24164522-24164623)
chr6 (147-231)||(20559542-20559625)
chr6 (172-246)||(11166052-11166126)
chr6 (182-214)||(31275943-31275975)
[»] chr5 (10 HSPs)
chr5 (29-248)||(537551-537769)
chr5 (29-213)||(6309461-6309644)
chr5 (74-248)||(42862105-42862277)
chr5 (74-213)||(40691641-40691781)
chr5 (74-248)||(38001710-38001883)
chr5 (74-214)||(30910523-30910662)
chr5 (178-248)||(23211180-23211249)
chr5 (29-141)||(42640267-42640376)
chr5 (32-99)||(27027155-27027223)
chr5 (74-160)||(4557364-4557450)
[»] scaffold0657 (1 HSPs)
scaffold0657 (29-248)||(1595-1813)
[»] chr3 (13 HSPs)
chr3 (29-248)||(16976049-16976267)
chr3 (29-248)||(5003987-5004204)
chr3 (29-248)||(46403855-46404075)
chr3 (31-248)||(7335952-7336167)
chr3 (32-248)||(43277302-43277518)
chr3 (74-247)||(9104829-9105001)
chr3 (147-248)||(8731473-8731575)
chr3 (147-248)||(9083360-9083462)
chr3 (147-213)||(11937263-11937329)
chr3 (172-246)||(5704648-5704722)
chr3 (172-242)||(1461494-1461564)
chr3 (29-99)||(37979833-37979904)
chr3 (181-213)||(17542113-17542145)
[»] chr2 (15 HSPs)
chr2 (29-248)||(40448212-40448429)
chr2 (32-213)||(34397115-34397296)
chr2 (29-213)||(44789272-44789454)
chr2 (74-248)||(40728733-40728905)
chr2 (74-213)||(18292047-18292184)
chr2 (74-248)||(35670071-35670243)
chr2 (74-218)||(41339556-41339700)
chr2 (144-245)||(12773805-12773906)
chr2 (147-223)||(29271339-29271415)
chr2 (172-246)||(23827789-23827863)
chr2 (172-213)||(28266551-28266592)
chr2 (29-90)||(28266408-28266470)
chr2 (174-213)||(11387707-11387746)
chr2 (141-169)||(27976402-27976430)
chr2 (141-169)||(28062930-28062958)
[»] chr1 (16 HSPs)
chr1 (29-248)||(338839-339056)
chr1 (29-248)||(43406625-43406842)
chr1 (46-248)||(37666454-37666654)
chr1 (29-241)||(35761287-35761499)
chr1 (78-248)||(18472249-18472417)
chr1 (74-248)||(6836626-6836799)
chr1 (123-248)||(8422287-8422412)
chr1 (172-248)||(24276117-24276192)
chr1 (172-242)||(24055667-24055736)
chr1 (175-248)||(19198203-19198278)
chr1 (29-99)||(25647809-25647880)
chr1 (172-248)||(33007051-33007127)
chr1 (172-247)||(33009123-33009198)
chr1 (155-213)||(16075468-16075527)
chr1 (172-213)||(16111136-16111177)
chr1 (32-106)||(19198065-19198137)
[»] scaffold0413 (1 HSPs)
scaffold0413 (29-248)||(163-381)
[»] chr4 (8 HSPs)
chr4 (34-248)||(40459682-40459894)
chr4 (29-248)||(28968494-28968714)
chr4 (29-212)||(70066-70247)
chr4 (87-248)||(55162922-55163082)
chr4 (84-212)||(49499822-49499950)
chr4 (33-247)||(2761356-2761565)
chr4 (172-246)||(10276781-10276855)
chr4 (69-175)||(34828064-34828169)
[»] chr8 (11 HSPs)
chr8 (61-213)||(22815622-22815774)
chr8 (47-213)||(44436867-44437031)
chr8 (74-248)||(6150250-6150424)
chr8 (29-223)||(40840782-40840975)
chr8 (74-248)||(41957762-41957933)
chr8 (173-248)||(35840881-35840955)
chr8 (172-246)||(12659338-12659412)
chr8 (33-99)||(35841029-35841096)
chr8 (172-243)||(10250975-10251046)
chr8 (32-68)||(22640699-22640735)
chr8 (141-169)||(21231121-21231149)
[»] scaffold0041 (1 HSPs)
scaffold0041 (47-248)||(32624-32820)
[»] scaffold1838 (1 HSPs)
scaffold1838 (87-207)||(958-1077)
[»] scaffold0120 (1 HSPs)
scaffold0120 (172-246)||(2122-2196)
[»] scaffold0013 (2 HSPs)
scaffold0013 (29-106)||(240908-240983)
scaffold0013 (155-223)||(242428-242496)
[»] scaffold0002 (1 HSPs)
scaffold0002 (172-246)||(356362-356436)
[»] scaffold0069 (1 HSPs)
scaffold0069 (172-246)||(11430-11504)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 15873233 - 15873451
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873233 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 15873332  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15873333 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 15873431  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  15873432 ccacaaaatagatagtatca 15873451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 10288047 - 10288266
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaa-atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaa 127  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  10288047 aattaaaactcttaaactaatatccttcaaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaa 10288146  T
Q  128 cttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaat 227  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10288147 cttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaat 10288245  T
Q  228 gccacaaaatagatagtatca 248  Q
    |||||||||||||||||||||    
T  10288246 gccacaaaatagatagtatca 10288266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 11035641 - 11035858
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  |||||| |||||||||    
T  11035641 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattttgtcccc-gtacgcacttcaagcaaaaac 11035739  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11035740 ttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 11035838  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  11035839 ccacaaaatagatagtatca 11035858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 13163530 - 13163714
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||  |||||| | |||||||    
T  13163530 aattaaaactcttaaactaatatccttcaaaaatttctattaaagttacaattcaatcaaaaacccaattttgtccctcgtacgcacttcaaacaaaaac 13163629  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    |||||| |||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  13163630 ttcaaagcatagaccatctattctttggtatctaaaatattagtgtaagggtcaatttccttaaccaaattggttcatactcaaa 13163714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 22078531 - 22078358
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| || ||||||||||| | ||||||||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  22078531 ttacaattcgattaaaaacccaatat-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtg 22078433  T
Q  174 taagggtcaatttccttatccaaattggttcat-actcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  22078432 taagggtcaatttccttatccaaattggttcataactc-aaagtacaagaacaatgccacaaaatagatagtatca 22078358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 12911034 - 12911207
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| ||||||||||||||| |||||| ||| ||| |||||||||||||||| ||||||    
T  12911034 ttacaattcgatcaaaaacccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatatctgctttggtacctaaaatattagtg 12911132  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||||    
T  12911133 taagggtcaattttcttatccaaattggttcatactc-aaagcacaagaaacaatgtcataaaatagatagtatca 12911207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 12196057 - 12196195
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| |||||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  12196057 ttacaattcgatcaaaaacccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagtatagaccatctcttctttggtacctaaaatgttagtg 12196155  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  12196156 taagagtcaatttccttatccaaattggttcatactcaaa 12196195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 40106715 - 40106542
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| |||||||| ||||||| ||||||||||  |||||| ||||||||||||||| ||||||  |||||||||| |||||||||||| ||| ||    
T  40106715 ttacaattcgatcaaaaatccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagacaatctcttcttaggtacctaaaattttaatg 40106617  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||||    
T  40106616 taagggtcaatttccatatccaaattggttcatactc-aaagcacaagaaacaatgtcataaaatagatagtatca 40106542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 48653131 - 48653278
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtccccc-gtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 172  Q
    ||||||||| || ||||||||||||| ||||||| |||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||| |    
T  48653131 ttacaattcgat-aaaaacccaattt-gtcccccggtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattaat 48653228  T
Q  173 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaa 223  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48653229 gtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaa 48653278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 49169641 - 49169815
Alignment:
Q  74 ttacaattcaa-tcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 172  Q
    ||||||||||| | |||||| |||||| ||||| ||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |    
T  49169641 ttacaattcaaataaaaaactcaattt-gtcccacgtacgcacttcaagcaaaaacttcaaatcatagaacatctcttctttggtacctaaaatgttaat 49169739  T
Q  173 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatca 248  Q
    ||| |||||||||| ||||||||||||||||||||||| ||||||| || ||||||| || |||||||||| |||||    
T  49169740 gtaggggtcaattttcttatccaaattggttcatactc-aaagcaccagaaacaatgtcataaaatagataatatca 49169815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 248
Target Start/End: Complemental strand, 9994220 - 9994053
Alignment:
Q  78 aattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaag 177  Q
    |||| ||| ||||||||||||||||||||     || |||| |||||||||  |||| |||| | ||| ||||||||| |||||||||||||||||| ||    
T  9994220 aatttaattaaaaacccaatttcgtccccgc---acgcttcaagcaaaaacaccaaagcatacaccatgtcttctttgatacctaaaatgttagtgttag 9994124  T
Q  178 ggtc-aatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    || | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9994123 gggccaatttccttatccaaattggttcatactcaaa-gcacaagaacaatgccacaaaatagatagtatca 9994053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 21490863 - 21490962
Alignment:
Q  147 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagta 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||||    
T  21490863 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgtcataaaatagatagta 21490961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 18366701 - 18366802
Alignment:
Q  147 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagta 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| || |||||||||||||    
T  18366701 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatac-ccaaagcacaagaaacaatgtcataaaatagatagta 18366799  T
Q  246 tca 248  Q
    |||    
T  18366800 tca 18366802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 9554543 - 9554619
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||| |||||||  | ||| ||||||||||||    
T  9554543 tgtaagggtcaattttcttatctaaactggttcatactc-aaagcacaagaaacaatgttataaagtagatagtatca 9554619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 1322294 - 1322326
Alignment:
Q  147 tcttctttggtacctaaaatgttagtgtaaggg 179  Q
    ||||||||||||||||||||||| |||||||||    
T  1322294 tcttctttggtacctaaaatgttggtgtaaggg 1322326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 24053092 - 24053164
Alignment:
Q  29 aattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatc-aaaaacccaattt 99  Q
    |||||||| ||||||||||| |||||||||||||| |||  | ||||| ||||| |||| |||||||||||||    
T  24053092 aattaaaattcttaaattaaatatccttcaaaaatctcttatgaagttgcaattaaatcaaaaaacccaattt 24053164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 34637136 - 34636918
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34637136 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaatccaatttcgtcccccgtatacacttccagcaaaaac 34637037  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  34637036 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatac-ccaaagcacaagaacaatg 34636938  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  34636937 ccacaaaatagatagtatca 34636918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 10750886 - 10751104
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  10750886 aattaaaactcttaaactaatatcattcaaaaatttctactgaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaac 10750985  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10750986 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 10751084  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||| ||||||||||||||    
T  10751085 ccacataatagatagtatca 10751104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 32449523 - 32449741
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| | | |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  |||||| ||||| |||    
T  32449523 aattaaaactcttaaacttaaatccttcaaaaatttctacctaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaagaac 32449622  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32449623 ttcaatgcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 32449721  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  32449722 ccacaaaatagatagtatca 32449741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 34 - 248
Target Start/End: Original strand, 26181955 - 26182168
Alignment:
Q  34 aaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaa 133  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||  |||||| ||||||||||||||    
T  26181955 aaactcttaaactaatatccttcaaaagtttctactaaagttacaattcaatcaaaaacccaattttgttccccgtacgcacttcaagcaaaaacttcaa 26182054  T
Q  134 aacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccaca 233  Q
    | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||| ||      
T  26182055 agcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcaaaattggttcatactc-aaagcaccggaacaatgtcatg 26182153  T
Q  234 aaatagatagtatca 248  Q
    ||||||||| |||||    
T  26182154 aaatagataatatca 26182168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 23259887 - 23260126
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaa-atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaa 127  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||    
T  23259887 aattaaaactcttaaactaatatccttcaaaaaatttctactaaagttacaattcaatcaaaaacccaatttcatcccccgtacgcacttcaagcaaaaa 23259986  T
Q  128 cttcaaaacatagatcatc--------------------tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcata 207  Q
    ||||||| |||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23259987 cttcaaagcatagatcatctcttctttggtacctaaaattcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcata 23260086  T
Q  208 ctcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  23260087 ctc-aaagcacaagaacaatgccacaaaatagatagtatca 23260126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 13772725 - 13772885
Alignment:
Q  87 aaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaattt 186  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  13772725 aaaaacccaattt-gtcccccgtacgcacttctagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagagtcaattt 13772823  T
Q  187 ccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatca 248  Q
    |||||||||||||||||||||||| |||||||||| ||||||| || || ||||||| |||||    
T  13772824 ccttatccaaattggttcatactc-aaagcacaagaaacaatgtcataatatagataatatca 13772885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 24164623 - 24164522
Alignment:
Q  147 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagta 245  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  24164623 tcttatttggtacctaaaatgttggtgtaaggggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgtcataaaatagatagta 24164525  T
Q  246 tca 248  Q
    |||    
T  24164524 tca 24164522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 20559625 - 20559542
Alignment:
Q  147 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgcca 231  Q
    ||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  20559625 tcttctttgatacctaaaatgttactgtaagggtcaatttctttatccaaattggttcatactc-aaagcacaagaacaatgcca 20559542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 11166052 - 11166126
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaa-gaacaatgccacaaaatagatagtat 246  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||  ||||||||   ||||||||||||||    
T  11166052 tgtaagggtcaatttccgtatccaaattggttcatact-gaaagcacaataaacaatgctctaaaatagatagtat 11166126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 31275943 - 31275975
Alignment:
Q  182 aatttccttatccaaattggttcatactcaaaa 214  Q
    |||||||||||||||||||||||||||| ||||    
T  31275943 aatttccttatccaaattggttcatacttaaaa 31275975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 537769 - 537551
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  537769 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatgcacttccagcaaaaac 537670  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  537669 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatac-ccaaagcacaagaacaatg 537571  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  537570 ccacaaaatagatagtatca 537551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 6309644 - 6309461
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtccccc-gtatacacttccagcaaaaa 127  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||    
T  6309644 aattaaaactc--aaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattttgtccccccgtatgcacttcaagcaaaaa 6309547  T
Q  128 cttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6309546 cttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 6309461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 42862277 - 42862105
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    |||||||||||||||||| ||||||| ||||||||||  |||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  42862277 ttacaattcaatcaaaaatccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttctttggtacctaaaatattagtg 42862179  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||| |||||||||||| ||| |||||| ||||||| | ||||||| || ||||||||||||||||    
T  42862178 taagggtcaattttcttatccaaattagtttatactc-aaagcaccaaaacaatgtcataaaatagatagtatca 42862105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 40691781 - 40691641
Alignment:
Q  74 ttacaattcaa-tcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 172  Q
    ||||||||||| |||||||| ||||||  |||||||||  |||||| ||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||    
T  40691781 ttacaattcaaatcaaaaactcaatttgttcccccgtacgcacttcaagcaaaaactttaaagcatagaccatatcttctttggtacctaaaatgttagt 40691682  T
Q  173 gtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40691681 gtaagggtcaatttccttatccaaattggttcatactcaaa 40691641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 38001883 - 38001710
Alignment:
Q  74 ttacaattcaatcaaaaa-cccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 172  Q
    ||||||||| |||||||| |||||||| ||||| ||||  |||||| ||||||||||||||| |||||| ||||||||||||| |||||||||| |||||    
T  38001883 ttacaattcgatcaaaaaacccaattt-gtccctcgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttgatacctaaaatattagt 38001785  T
Q  173 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    ||||| | |||||||||||||||||||||||||||| ||||| ||| | ||||||| || ||||||||||||||||    
T  38001784 gtaagagccaatttccttatccaaattggttcatacacaaaa-caccaaaacaatgtcataaaatagatagtatca 38001710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 30910662 - 30910523
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| |||||||||||||||| || || ||||  |||||  ||||||||||||||| |||| | |||||||||||| ||||||||||| ||||||    
T  30910662 ttacaattcgatcaaaaacccaattt-gttcctcgtacgcactttaagcaaaaacttcaaagcataaaccatctcttctttcgtacctaaaatattagtg 30910564  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30910563 taagggtcaatttccttatccaaattggttcatactcaaaa 30910523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 23211249 - 23211180
Alignment:
Q  178 ggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  23211249 ggtcaatttccttatccaaattggttcatactc-aaagcacaataacaatgccacaaagtagatagtatca 23211180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 42640376 - 42640267
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||| ||||| |||| ||||||| |||||  |||||| |||||||||    
T  42640376 aattaaaattcttaaattaatatccttc-aaaattacttctaaaattacaattcaat-aaaaatccaa-ttcgtccaccgtacgcacttcaagcaaaaac 42640280  T
Q  129 ttcaaaacataga 141  Q
    |||||| ||||||    
T  42640279 ttcaaagcataga 42640267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 27027223 - 27027155
Alignment:
Q  32 taaaactcttaaattaat-atccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 99  Q
    ||||| ||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27027223 taaaattcttaaaataattatacttcaaaaatttcttctaaagttacaattcaatcaaaaacccaattt 27027155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 4557364 - 4557450
Alignment:
Q  74 ttacaattca-atcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacc 160  Q
    |||||||||| |||||||||||||||| ||||||||||  |||||| | ||||||||||||| |||||| ||||||||| ||||||||    
T  4557364 ttacaattcatatcaaaaacccaattt-gtcccccgtacgcacttcaaacaaaaacttcaaagcatagaccatctcttcattggtacc 4557450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 1595 - 1813
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1595 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatgcacttccagcaaaaac 1694  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1695 ttcaaagtatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatac-ccaaagcacaagaacaatg 1793  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  1794 ccacaaaatagatagtatca 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 16976267 - 16976049
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||||||    
T  16976267 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaactcaatttcgtcccccgtacgcacttcaagcaaaaac 16976168  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16976167 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaa-cacaagaacaatg 16976069  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  16976068 ccacaaaatagatagtatca 16976049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 5003987 - 5004204
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  5003987 aattaaaactcttaact-aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaac 5004085  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  5004086 ttcaaagcatagatcatctcttatttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaata 5004184  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  5004185 ccacaaaatagatagtatca 5004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 46403855 - 46404075
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaa--atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaa 126  Q
    |||||||||||||| | |||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  46403855 aattaaaactcttatactaatatccttcaaaataattactactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaa 46403954  T
Q  127 acttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaa 226  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46403955 acttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaa 46404053  T
Q  227 tgccacaaaatagatagtatca 248  Q
    ||||| ||||||||||||||||    
T  46404054 tgccataaaatagatagtatca 46404075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 7335952 - 7336167
Alignment:
Q  31 ttaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaactt 130  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||||    
T  7335952 ttaaaactcgtaaactaagatccttcaaaa-tttctactaaagttacaattcaatcacaaacccaatttcgtcccccgtacgcacttcaagcaaaaactt 7336050  T
Q  131 caaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgcc 230  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7336051 caaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgcc 7336149  T
Q  231 acaaaatagatagtatca 248  Q
    ||||||||||||||||||    
T  7336150 acaaaatagatagtatca 7336167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 43277302 - 43277518
Alignment:
Q  32 taaaactcttaaattaat-atccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaactt 130  Q
    ||||| ||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||| || || |||||||  |||||| |||||||||      
T  43277302 taaaattcttaaaataattatccttcaaaaatttattctaaagttacaattcaatcaaaaacccaactt-gttccccgtacgcacttcaagcaaaaacac 43277400  T
Q  131 caaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagca-caagaacaatgc 229  Q
    ||||  ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||  |||||||     
T  43277401 caaagtatagaccatctcttctttagtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcaccataaacaatgt 43277499  T
Q  230 cacaaaatagatagtatca 248  Q
    || ||||||||||||||||    
T  43277500 cataaaatagatagtatca 43277518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 247
Target Start/End: Complemental strand, 9105001 - 9104829
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| ||  |||||||||||| ||||||||||  |||||| |||| |||||||||| ||||||  ||||||||||||||||||||||| ||||||    
T  9105001 ttacaattcgatttaaaacccaattt-gtcccccgtacgcacttcaagcagaaacttcaaagcatagacaatctcttctttggtacctaaaatattagtg 9104903  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatc 247  Q
     |||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||    
T  9104902 caaggatcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgccataaaataaatagtatc 9104829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 8731575 - 8731473
Alignment:
Q  147 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagt 244  Q
    |||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  8731575 tcttctttagtacctaaaatgttgatgtaaggggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgccataaaatagatagt 8731477  T
Q  245 atca 248  Q
    ||||    
T  8731476 atca 8731473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 9083462 - 9083360
Alignment:
Q  147 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagt 244  Q
    |||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  9083462 tcttctttagtacctaaaatgttgatgtaaggggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgccataaaatagatagt 9083364  T
Q  245 atca 248  Q
    ||||    
T  9083363 atca 9083360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 11937263 - 11937329
Alignment:
Q  147 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  11937263 tcttctttggtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatattcaaa 11937329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 5704722 - 5704648
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 246  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  5704722 tgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 5704648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 1461564 - 1461494
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagata 242  Q
    |||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||||  ||||||||||    
T  1461564 tgtaagagtcaatttccttatccaaattagttcatactc-aaagcacaagaaacaatgccctaaaatagata 1461494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 37979904 - 37979833
Alignment:
Q  29 aattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 99  Q
    |||||||| ||||||||||| |||||||||||||| | | |||||||| ||||| |||||||||||||||||    
T  37979904 aattaaaattcttaaattaaatatccttcaaaaatctattctaaagttgcaattaaatcaaaaacccaattt 37979833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 17542113 - 17542145
Alignment:
Q  181 caatttccttatccaaattggttcatactcaaa 213  Q
    ||||||||||||||||||| |||||||||||||    
T  17542113 caatttccttatccaaattagttcatactcaaa 17542145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 40448429 - 40448212
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  40448429 aattaaaactcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaatttcgtcccccgtaagcacttcaagcaaaaac 40448331  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40448330 ttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 40448232  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  40448231 ccacaaaatagatagtatca 40448212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 34397115 - 34397296
Alignment:
Q  32 taaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttc 131  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||| || |||||||   ||||| ||||||||||||    
T  34397115 taaaactcttaaactaatatccttcaaaaatttctactaaagttacattccaatcaaaaactcaattttgttccccgtacgtacttcaagcaaaaacttc 34397214  T
Q  132 aaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  34397215 aaagctcagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttattcaaattgattcatactcaaa 34397296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 44789454 - 44789272
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||  |||  ||||||  |||| |||    
T  44789454 aattaaaactcttaaactaatatccttcaaaagtttctactaaagttacaattcaattaaaaacccaattttgtcccatgtacgcacttcaggcaataac 44789355  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    |||||| |||||| ||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44789354 ttcaaagcatagacca--tcttctttggtacctaaaatgttagtgtgagggtcaatttccttatccaaattggttcatactcaaa 44789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 40728733 - 40728905
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| ||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||    
T  40728733 ttacaattcgatcaaaaacccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagactatctcttctttggtacctaaaatattagtg 40728831  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||| || ||||||||||||||||    
T  40728832 taagggtcaatttccttattcaaattggttcatactc-aaagcaccaaaacaatgtcataaaatagatagtatca 40728905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 18292047 - 18292184
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| ||||||| ||||||||  |||||| ||| |||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  18292047 ttacaattcgatcaaaa-cccaattta-tcccccatatgcacttcaagcaaaaacttcaaagcataaatcatctcttctttggtacctaaaatgttagtg 18292144  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  18292145 taagggtcaatttccttatccaaattggttcatcctcaaa 18292184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 35670071 - 35670243
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| || ||||||| ||||| |||||||| |  |||||| ||||||||||||||| |||| | |||||||||||||||||||||||| ||||||    
T  35670071 ttacaattcgat-aaaaacctaattt-gtcccccgaacgcacttcaagcaaaaacttcaaagcatataccatctcttctttggtacctaaaatattagtg 35670168  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| || ||||||||||||||||    
T  35670169 taagggtcaatttccttatccaaattggttcctactc-aaagcacaagaaacaatgtcataaaatagatagtatca 35670243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 41339556 - 41339700
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaa-acttcaaaacatagatcatctcttctttggtacctaaaatgttagt 172  Q
    ||||||||| || ||||||| ||||| ||||||| ||  |||||| ||||||| |||||||| ||| || ||||| |||||| ||||||||||| |||||    
T  41339556 ttacaattcgataaaaaacctaattt-gtcccccatacgcacttcaagcaaaaaacttcaaagcatggaccatcttttctttcgtacctaaaatattagt 41339654  T
Q  173 gtaagggtcaatttccttatccaaattggttcatactcaaaagcac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41339655 gtaagggtcaatttccttatccaaattggttcatactcaaaagcac 41339700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 12773805 - 12773906
Alignment:
Q  144 atctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagata 242  Q
    |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||| || || |||||||    
T  12773805 atctcttctttggtacctaaaaggttagtgtaagtgtcaattttcttatccaaattggttcatactc-aaagcacaagaaacaatgtcataagatagata 12773903  T
Q  243 gta 245  Q
    |||    
T  12773904 gta 12773906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 29271415 - 29271339
Alignment:
Q  147 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaaagcacaagaa 223  Q
    ||||||||| ||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||| |||||||||||||    
T  29271415 tcttctttgatacctaaaatgttggtgtatgggctcaatttccttgtccaaattggttcatact-aaaagcacaagaa 29271339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 23827789 - 23827863
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 246  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  23827789 tgtaagggttaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 23827863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 28266551 - 28266592
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28266551 tgtaagggtcaatttccttatccaaattggttcatactcaaa 28266592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 28266408 - 28266470
Alignment:
Q  29 aattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaa 90  Q
    |||||||| ||||||| ||| |||||||||||||||||| |||||||||||||| ||| ||||    
T  28266408 aattaaaattcttaaaataaatatccttcaaaaatttcttctaaagttacaatttaattaaaa 28266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 11387746 - 11387707
Alignment:
Q  174 taagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  11387746 taagggttaattttcttatccaaattggttcatactcaaa 11387707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 27976402 - 27976430
Alignment:
Q  141 atcatctcttctttggtacctaaaatgtt 169  Q
    |||||||||||||||||||||||||||||    
T  27976402 atcatctcttctttggtacctaaaatgtt 27976430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 28062930 - 28062958
Alignment:
Q  141 atcatctcttctttggtacctaaaatgtt 169  Q
    |||||||||||||||||||||||||||||    
T  28062930 atcatctcttctttggtacctaaaatgtt 28062958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 339056 - 338839
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  339056 aattaaaactcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaatttcgtcccccgtaagcacttcaagcaaaaac 338958  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  338957 ttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 338859  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  338858 ccacaaaatagatagtatca 338839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 43406625 - 43406842
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||  |||||| |||||||||    
T  43406625 aattaaaactcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaatttcgtcccctgtacgcacttcaagcaaaaac 43406723  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43406724 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 43406822  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  43406823 ccacaaaatagatagtatca 43406842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 46 - 248
Target Start/End: Original strand, 37666454 - 37666654
Alignment:
Q  46 taatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcat 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| || |||| ||||||||||    
T  37666454 taatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaa-ctacaaagcatagatcat 37666552  T
Q  146 ctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagta 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37666553 ctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgccacaaaatagatagta 37666651  T
Q  246 tca 248  Q
    |||    
T  37666652 tca 37666654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 35761287 - 35761499
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||    
T  35761287 aattaaaactcttaaactaatatccttaaaaaatttatactaaagttacaattcaatcaaaaatccaatttcgtcccccgtacgcacttcaagcaaaaac 35761386  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaat 227  Q
    |||||| ||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||    
T  35761387 ttcaaagcatagacaatatcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaaccat 35761485  T
Q  228 gccacaaaatagat 241  Q
    |||| |||||||||    
T  35761486 gccataaaatagat 35761499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 248
Target Start/End: Original strand, 18472249 - 18472417
Alignment:
Q  78 aattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaag 177  Q
    ||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||    
T  18472249 aattcgatcaaaaacccaattt-gtcccccgtacacacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatattagtgtaag 18472347  T
Q  178 ggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    ||||||||| ||||||||||||||||||||||| ||||||| | ||||||| || ||||||||||||||||    
T  18472348 ggtcaattttcttatccaaattggttcatactc-aaagcaccaaaacaatgtcataaaatagatagtatca 18472417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 6836799 - 6836626
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtccccc-gtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 172  Q
    |||||||||||| |||||||||||||  |||||| |||  |||||| |||||| ||  |||| |||| | |||  |||||||||||||||||||||||||    
T  6836799 ttacaattcaat-aaaaacccaatttgttccccccgtacgcacttcaagcaaacacaccaaagcatacaccattccttctttggtacctaaaatgttagt 6836701  T
Q  173 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6836700 gtaagggtcaatttccttatccaaattggttcatact-taaagcacaagaacaatgccacaaaatagatagtatca 6836626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 8422412 - 8422287
Alignment:
Q  123 aaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag- 221  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||     
T  8422412 aaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcaccaga 8422314  T
Q  222 aacaatgccacaaaatagatagtatca 248  Q
    ||||||| || |||||||||| |||||    
T  8422313 aacaatgtcataaaatagataatatca 8422287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 24276192 - 24276117
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||    
T  24276192 tgtaagggtcaatttctttatccaaattggttcatactc-aaagtacaagaacaatgccacaaagtagatagcatca 24276117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 24055667 - 24055736
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagata 242  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  24055667 tgtaggggtcaatttccttatccaaattggttgatactc-aaagcacaagaacaatgccacaaagtagata 24055736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 19198203 - 19198278
Alignment:
Q  175 aagggtcaatttccttatccaaattggttcatactcaaaagcacaag---aacaatgccacaaaatagatagtatca 248  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||   ||||||| || ||||||||||||||||    
T  19198203 aagggtcaatttccttatccaaattggttcatactc-aaagcacaagataaacaatgtcataaaatagatagtatca 19198278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 25647880 - 25647809
Alignment:
Q  29 aattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 99  Q
    |||||||| ||||||||||| |||||||||||||| ||| |||||||| ||||| |||||||||||||||||    
T  25647880 aattaaaattcttaaattaaatatccttcaaaaatctcttctaaagttgcaattaaatcaaaaacccaattt 25647809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 33007051 - 33007127
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||| || |||||||||| |||||    
T  33007051 tgtaagggtcaatttccttatccaaattgattcatactc-aaagcaccagaaacaatgtcataaaatagataatatca 33007127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 33009198 - 33009123
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatc 247  Q
    ||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||| || ||| |||||||||||    
T  33009198 tgtaagggtcaattttcttatccaaattggttcatgctc-aaagcacaagaaacaatgtcataaagtagatagtatc 33009123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 16075527 - 16075468
Alignment:
Q  155 ggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaa 213  Q
    ||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||||    
T  16075527 ggtacctaaaatgttggtgtaaaggctcaatttccttatccaagttggttcatactcaaa 16075468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 16111177 - 16111136
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  16111177 tgtaagggtcaattttcttatccaaattggttcatactcaaa 16111136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 19198065 - 19198137
Alignment:
Q  32 taaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccc 106  Q
    ||||| || |||| ||||||||||| |||||| || ||||| |||||||||||| |||||||||||||| |||||    
T  19198065 taaaattcctaaactaatatccttc-aaaattacttctaaaattacaattcaat-aaaaacccaatttcatcccc 19198137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 381 - 163
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  381 aattaaaactcttaaactaatatccttcaagagtttctactaaagttaaaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaac 282  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 228  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  281 ttcaaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttccttatccaaattgattcatactc-aaagcacaagaacaatg 183  T
Q  229 ccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||    
T  182 ccacaaaatagatagtatca 163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 34 - 248
Target Start/End: Complemental strand, 40459894 - 40459682
Alignment:
Q  34 aaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaa 133  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||    
T  40459894 aaactcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaatttcgtcccctgtacgcacttcaagcaaaaacttcaa 40459796  T
Q  134 aacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccaca 233  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40459795 agcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgccaca 40459697  T
Q  234 aaatagatagtatca 248  Q
    |||||||||||||||    
T  40459696 aaatagatagtatca 40459682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 28968494 - 28968714
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaa-tttcgtcccccgtatacacttccagcaaaaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||| ||||||||    
T  28968494 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaatccaaattttgtcccccgtatgcacttcaagcaaaaa 28968593  T
Q  128 cttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaa 226  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  28968594 cttcaaagcatagaccatcttttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttgatactc-aaagcacaagaaacaa 28968692  T
Q  227 tgccacaaaatagatagtatca 248  Q
    |  || |||||||||| |||||    
T  28968693 tctcataaaatagataatatca 28968714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 70247 - 70066
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 128  Q
    |||||||| ||||||| ||||||| ||||||| || || ||||| |||||||||||| |||||| |||||||||||||||||  |||||| |||||||||    
T  70247 aattaaaattcttaaactaatatcattcaaaa-ttacttctaaaattacaattcaat-aaaaactcaatttcgtcccccgtacgcacttcaagcaaaaac 70150  T
Q  129 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 212  Q
    |||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  70149 ttcaaagcatagaccatctcttctttggtatctaaaatgttagtgtaaggatcaatttccttatccaaattggttcatactcaa 70066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 55163082 - 55162922
Alignment:
Q  87 aaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaattt 186  Q
    ||||||||||||| || | ||||| ||||||| || |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  55163082 aaaaacccaattt-gttcgccgtacacacttcaagtaaaaacttcaaagcatagaccatctcttctttggtgcctaaaatgttagtgtaagggtcaattt 55162984  T
Q  187 ccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatca 248  Q
    |||||||||||||||||||||||| ||||||| || ||||||| || |||||||||| |||||    
T  55162983 ccttatccaaattggttcatactc-aaagcaccagaaacaatgtcataaaatagataatatca 55162922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 49499950 - 49499822
Alignment:
Q  84 atcaaaaacccaatttcgtcccccgtatacacttccagc-aaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtca 182  Q
    ||||||||| |||||| ||||||||||  |||||| ||| |||||||||||| |||||| |||||||||||| | |||||||||||||||||||||||||    
T  49499950 atcaaaaactcaattt-gtcccccgtacgcacttcaagcgaaaaacttcaaagcatagaccatctcttctttagcacctaaaatgttagtgtaagggtca 49499852  T
Q  183 atttccttatccaaattggttcatactcaa 212  Q
    ||||||||||||||||| ||||||||||||    
T  49499851 atttccttatccaaattagttcatactcaa 49499822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 2761356 - 2761565
Alignment:
Q  33 aaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttca 132  Q
    |||| ||||||| || |||||||||||| || || ||||  ||| |||||||| |||||||||||||||||| | |||  | |||| |||||||||  ||    
T  2761356 aaaattcttaaactactatccttcaaaa-ttacttctaatattaaaattcaat-aaaaacccaatttcgtcctc-gtacgcgcttcaagcaaaaacacca 2761452  T
Q  133 aaacatagatcatctcttctttggtacctaaaatgttagtgt--aagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgcc 230  Q
    || |||| | ||| ||||||||| |||||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||||||||   ||||||    
T  2761453 aagcatacaccatgtcttctttgatacctaaaatattagtgtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaag---aatgcc 2761548  T
Q  231 acaaaatagatagtatc 247  Q
    | |||||||||||||||    
T  2761549 ataaaatagatagtatc 2761565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 10276855 - 10276781
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 246  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  10276855 tgtaagggtcaatttccttatacaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 10276781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 34828064 - 34828169
Alignment:
Q  69 taaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgt 168  Q
    |||| |||||||||||||||||| |||||||  ||||   ||| | |||| ||||||||| ||||| |||| | ||| |||| |||||||||||||||||    
T  34828064 taaaattacaattcaatcaaaaatccaattttatcccta-tatgcgcttcaagcaaaaacatcaaagcatacaccatgtcttttttggtacctaaaatgt 34828162  T
Q  169 tagtgta 175  Q
    | |||||    
T  34828163 tggtgta 34828169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 22815622 - 22815774
Alignment:
Q  61 atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||  |||||||| ||||||||    
T  22815622 atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaatcatagactatctcttcattggtacc 22815721  T
Q  161 taaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  22815722 taaaatgttaatgtaagggtcaatttcattatccaaattggttcatactcaaa 22815774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 47 - 213
Target Start/End: Complemental strand, 44437031 - 44436867
Alignment:
Q  47 aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatc 146  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| ||  |||||| ||||||||||||||| |||||| ||||    
T  44437031 aatatccttcaaaa-tttcttctaaagttacaattcaatcaaaaacccaattt-gtcccccatacgcacttcaagcaaaaacttcaaagcatagaccatc 44436934  T
Q  147 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 213  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  44436933 tcttctttggtacctaaaatgttagtgtaagggtcgatttccttatccaaattgattcatactcaaa 44436867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 6150424 - 6150250
Alignment:
Q  74 ttacaattca-atcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 172  Q
    |||||||||| |||||||||| ||||| |||| |||||  |||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  6150424 ttacaattcagatcaaaaacctaattt-gtcctccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatgttagt 6150326  T
Q  173 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatca 248  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| || |||||||||| |||||    
T  6150325 gtaagggtcaatttccttatccaaattggttcatactcaaaa-caccagaaacaatgtcataaaatagataatatca 6150250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 40840782 - 40840975
Alignment:
Q  29 aattaaaactcttaaatt-aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaa 127  Q
    |||||||| ||||||| | |||||||||||||| || ||  | || |||||||||||||||||| |||||||   ||||||||  |||||| ||||||||    
T  40840782 aattaaaattcttaaaatgaatatccttcaaaa-ttacttttcaaattacaattcaatcaaaaatccaatttgtccccccgtacgcacttcaagcaaaaa 40840880  T
Q  128 cttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaa 223  Q
    ||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  40840881 ctttaaagcatagaccatctcttctttggtacataaaatgttagtgtaagggtcaatttccttatccaaattagttcatactc-aaagcacaagaa 40840975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 41957762 - 41957933
Alignment:
Q  74 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 173  Q
    ||||||||| |||||||| |||||||  |||||| ||  |||| | ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  41957762 ttacaattcgatcaaaaatccaattta-tcccccatacgcactacaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtg 41957860  T
Q  174 taagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |  ||||||| || ||||||||||||||||    
T  41957861 taagggtcaatttccttatccaaattggttcatactc-aaagca-agaaacaatgtcataaaatagatagtatca 41957933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 35840955 - 35840881
Alignment:
Q  173 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatca 248  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35840955 gtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgccacaaaatagatagtatca 35840881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 12659338 - 12659412
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 246  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  12659338 tgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 12659412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 35841096 - 35841029
Alignment:
Q  33 aaaactcttaaattaat-atccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 99  Q
    |||| |||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  35841096 aaaattcttaaattaattatccttcaaaattttcttctagagttacaattcaatcaaaaacccaattt 35841029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 10251046 - 10250975
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatag 243  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||   |||||||||||    
T  10251046 tgtaagagtcaatttccttatccaaattggttcatact-aaaagcacaagaaacaatgctctaaaatagatag 10250975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 22640699 - 22640735
Alignment:
Q  32 taaaactcttaaattaatatccttcaaaaatttctac 68  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22640699 taaaactcttaaactaatatccttcaaaaatttctac 22640735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 21231121 - 21231149
Alignment:
Q  141 atcatctcttctttggtacctaaaatgtt 169  Q
    |||||||||||||||||||||||||||||    
T  21231121 atcatctcttctttggtacctaaaatgtt 21231149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 248
Target Start/End: Original strand, 32624 - 32820
Alignment:
Q  47 aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatc 146  Q
    |||||||||||||| || |  ||||| |||||||||||| ||||| ||||||| ||||||  ||  |||||| |  |||||||||||| |||||| ||||    
T  32624 aatatccttcaaaa-ttacatctaaaattacaattcaattaaaaatccaattt-gtcccctatacgcacttcaacaaaaaacttcaaagcatagaccatc 32721  T
Q  147 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtat 246  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  32722 tc--ctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaaagccacaaaatagatagtat 32818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 1077 - 958
Alignment:
Q  87 aaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaattt 186  Q
    ||||||||||||| |||||||||| ||||||| || |||||||||||| ||| || ||||||||||||||||| |||||| |||||||||||||||||||    
T  1077 aaaaacccaattt-gtcccccgtacacacttcaagaaaaaacttcaaagcatggaccatctcttctttggtacttaaaatattagtgtaagggtcaattt 979  T
Q  187 ccttatccaaattggttcata 207  Q
    |||||||||||||||||||||    
T  978 ccttatccaaattggttcata 958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 2122 - 2196
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 246  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  2122 tgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 2196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 240908 - 240983
Alignment:
Q  29 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccc 106  Q
    |||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||| ||||||||||||||||||||    
T  240908 aattaaaattcttaaattaatatccttc-aaaattacttctaaaattacaattcaat-aaaaacccaatttcgtcccc 240983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 242428 - 242496
Alignment:
Q  155 ggtacctaaaatgttagtgtaa-gggtcaatttccttatccaaattggttcatactcaaaagcacaagaa 223  Q
    ||||||||||||||| |||||| |||||||||||||| | ||||||||||||||||| ||||||||||||    
T  242428 ggtacctaaaatgttggtgtaaagggtcaatttccttgttcaaattggttcatactc-aaagcacaagaa 242496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 356362 - 356436
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 246  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  356362 tgtaagggtcaatttccttattcaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 356436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 11504 - 11430
Alignment:
Q  172 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcac-aagaacaatgccacaaaatagatagtat 246  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||   ||||||||||||||    
T  11504 tgtaaggatcaatttccttatccaaattggttcatactc-aaagcacaaaaaacaatgctctaaaatagatagtat 11430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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