View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0082_low_6 (Length: 241)
Name: NF0082_low_6
Description: NF0082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0082_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 20998400 - 20998622
Alignment:
| Q |
16 |
catcatcttagaagggaatagtcgctgaattgaaggaaaaggttccgcagctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgctggga |
115 |
Q |
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| T |
20998400 |
catcatcttcgaagggaatagtcgctgaattgaaggaaaaggttccgcagctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgctggga |
20998499 |
T |
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| Q |
116 |
gaaagacaaacctgttccgtttttgtttctctgcttagcgtttgatatgattaatgaagagagtggaaggattgtgatcactgacattgtgtgtaatttg |
215 |
Q |
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| T |
20998500 |
gaaagacaaacctgttccgtttttgtttctctgtttggcgtttgatatgattaacgaagagagtgggaggattgtgatcactgacattgtgtgtaatttg |
20998599 |
T |
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| Q |
216 |
ttgagaactgtgatacatgctac |
238 |
Q |
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| T |
20998600 |
ttgagaactgtgatacatgctac |
20998622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 20988185 - 20988387
Alignment:
| Q |
33 |
atagtcgctgaattgaaggaaaaggttccgcagctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgctgggagaaagacaaacctgttc |
132 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
20988185 |
atagtcgctgaattgaaggaaaaagttccggagctgaagaagaaaccggagaatttcgatccgagttcggttgtttgctgggagaaaaacaaacctgtgc |
20988284 |
T |
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| Q |
133 |
cgtttttgtttctctgcttagcgtttgatatgattaatgaagagagtggaaggattgtgatcactgacattgtgtgtaatttgttgagaactgtgataca |
232 |
Q |
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| T |
20988285 |
cgtttttgtttctctctttagcgtttgatttgattagcaaagagaggggaagaattgtgatcactgagattgtgtgtaatctgttgaggactgtgataca |
20988384 |
T |
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| Q |
233 |
tgc |
235 |
Q |
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||| |
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| T |
20988385 |
tgc |
20988387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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