View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0083_low_1 (Length: 278)
Name: NF0083_low_1
Description: NF0083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0083_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 10102969 - 10103111
Alignment:
| Q |
103 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaactatccaagaggtaatattattcattaatt |
202 |
Q |
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| T |
10102969 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaacaatccaagaggtaatattattcattaatt |
10103068 |
T |
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| Q |
203 |
tgttcttaaaatgaacaaacttctttatgtaccctttgcttct |
245 |
Q |
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| T |
10103069 |
tgttcttaaaatgaacaaacttctttatgtaccctttggttct |
10103111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 10102621 - 10102663
Alignment:
| Q |
57 |
atcagaacaatcttgtttgagacatacataacaataaggataa |
99 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
10102621 |
atcataacaatcttgtttgagacatacataacaataagaataa |
10102663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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