View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0084-INSERTION-2 (Length: 1052)
Name: NF0084-INSERTION-2
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084-INSERTION-2 |
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Alignment Details
Target: chr4 (Bit Score: 725; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 7 - 1006
Target Start/End: Original strand, 52071606 - 52072607
Alignment:
| Q |
7 |
aacaattagcataaattcttcaaaacaattagtattagtaatcactttttatgataatcaaatattacctatttccaagtagtttgtgaagtcggatgat |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52071606 |
aacaattagcataaattcttcaaaataattagtattagtaatcactttttatgataatcaaatgttacctatttccaagtagtttgtgaagtcggatgat |
52071705 |
T |
|
| Q |
107 |
aagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52071706 |
aagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacct |
52071805 |
T |
|
| Q |
207 |
gcatggcataaatatatttacaaaaacatgaaggnnnnnnntataagcaaacaaaagtgtgtcattgatgatctatgtaagaagatacataattaatgaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52071806 |
gcatggcataaatatatttacaaaaacatgaaggaaaaaaatataagcaaacaaaagtgcgtcattgatgatctatgtaagaagatacataattaatgaa |
52071905 |
T |
|
| Q |
307 |
cctgctcttttgggaaggtttctccattttccttcaccatggagcttaatgtagtctgagagaattttgtcttcatgagctgtccaagcacctctgttca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52071906 |
cctgctcttttgggaaggtttctccattttccttcaccatggagcttaatgtagtctgagagaattttgtcttcatgagctgtccaagcacctctgttca |
52072005 |
T |
|
| Q |
407 |
atccctcctttgcacaacaaggacttctccccattgatgctcttcttaattaggctgttttggattcctacctcactctccggattgggagtacgtgttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
52072006 |
atccctcctttgcacaacaaggacttctccccattgatgctcttcttaattaggctgttttggattcctacctcactctccggatt-ggagtacgtgttt |
52072104 |
T |
|
| Q |
507 |
ggatgtagacagaattaaataacttgcaagagtaattgggtaaccacctatatatacacatatgtgccaatatatggatactttaggttgcatatggaat |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52072105 |
ggatgtagacagaattaaataacttgcaagagtaatt-ggtaaccacctatatatacacatatgtgccaatatatggatactttaggttgcatatggaat |
52072203 |
T |
|
| Q |
607 |
tgctatcatttatgtcatgtcacggaacaatgttagaatgggacatgcacttgggctagaaatttatatctggcttcaacagtgttatactttattttag |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52072204 |
tgctatcatttatgtcatgtcacggaacaatgttagaatgggacatgcactt-ggctagaaatttatatctggcttcaacagtgttatactttattttag |
52072302 |
T |
|
| Q |
707 |
atacacctactaaannnnnnnnnnnnnnnnacnnnnnnnncttgtaatatataaatataatattctattaacttttaaagtgttactctctccgatcctt |
806 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52072303 |
atacacctactaaattttttatttttttttacaaaaaaaacttttaatatataaatataatattctattaacttttaaagtgttactctctccgatcctt |
52072402 |
T |
|
| Q |
807 |
aatat---agaaaaaattattttatagattatgtacttgcag-aaattatat-acatagaggggatgaattaagatgggaggtcgacatggattttctgg |
901 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||| ||| ||||| ||| | ||||||||||||| | |
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|
| T |
52072403 |
aatataagaaaaaaaattattttatagattatgtacttgcagaaaataatataacatagaggtgatg-atttagatgtgagctggacatggattttcctg |
52072501 |
T |
|
| Q |
902 |
gtcctacg-aatcctaaaggatcttaggt-atcaaaggtac-tagttctgtattggatgagactcctcttttacgacttaggtgaggggtgaatttatga |
998 |
Q |
| |
|
|||||||| | ||||||| |||||||||| ||||||| ||| || |||| |||||||||||||| |||||||||| ||| |||||||||| |||||| | |
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|
| T |
52072502 |
gtcctacgtattcctaaa-gatcttaggtaatcaaagttacataattctatattggatgagact-ctcttttacgccttgagtgaggggtgtatttataa |
52072599 |
T |
|
| Q |
999 |
atacgaca |
1006 |
Q |
| |
|
|||||||| |
|
|
| T |
52072600 |
atacgaca |
52072607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 9622011 - 9621943
Alignment:
| Q |
128 |
tatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||| |
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|
| T |
9622011 |
tatgttacctctctttatatctggtctaagataattcatccatctaagtctacaacttttcccacatct |
9621943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 7195424 - 7195365
Alignment:
| Q |
134 |
gcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccaca |
193 |
Q |
| |
|
||||||||| ||| ||||| | ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7195424 |
gcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
7195365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 5843130 - 5843176
Alignment:
| Q |
150 |
ggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
|||||||||||||| | |||||| | ||||||||||||||||||||| |
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|
| T |
5843130 |
ggtcttagataatttatccatcttaatctacaactttttccacatct |
5843176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 5849872 - 5849918
Alignment:
| Q |
150 |
ggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
|||||||||||||| | |||||| | ||||||||||||||||||||| |
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|
| T |
5849872 |
ggtcttagataatttatccatcttaatctacaactttttccacatct |
5849918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 48892585 - 48892676
Alignment:
| Q |
105 |
ataagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
|||||||| ||||| |||| | |||||| |||||||| ||||||||||||||||| |||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
48892585 |
ataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct |
48892676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 16127400 - 16127475
Alignment:
| Q |
135 |
cctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacctgcat |
210 |
Q |
| |
|
|||||||||||||| | ||||| |||||| | |||||| | ||||||||| |||||||||||| ||||||||||| |
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|
| T |
16127400 |
cctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccacatcttaataaacctgcat |
16127475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 16138910 - 16138984
Alignment:
| Q |
135 |
cctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacctgca |
209 |
Q |
| |
|
|||||||||||||| ||| ||| ||| || | |||||| | ||||||||| |||||||||||| |||||||||| |
|
|
| T |
16138910 |
cctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatcttaataaacctgca |
16138984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 1319331 - 1319385
Alignment:
| Q |
142 |
taatatctggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
1319331 |
taatatcaggccttagataattattccatctaagtctacaactctttccacatct |
1319385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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