View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084-INSERTION-4 (Length: 945)
Name: NF0084-INSERTION-4
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084-INSERTION-4 |
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Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 15 - 720
Target Start/End: Original strand, 35400575 - 35401275
Alignment:
| Q |
15 |
ggggggtgttcacagaaataccacagggatttactactgcgtctagctccaccagtgaccactgctcaaattcctctgccatctcccccacctccattgc |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400575 |
ggggtgtgttcacagaaataccacagggatttactactgcgtctagctccaccagtgaccactgctcaaattcctctgccatctcccccacctccattgc |
35400674 |
T |
|
| Q |
115 |
ctaggcttgaaacgtctcccgaaaaggttgtagcttcaccggttggaagaggccctggaaggcgtggaaaagataaaagatctggttccaagcgtcaccg |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400675 |
ctatgcttgaaacgtctcccgaaaaggttgtagcttcaccggttggaagaggccctggaaggcgtggaaaagataaaagatctggttccaagcgtcaccg |
35400774 |
T |
|
| Q |
215 |
caaagttgttgctggaagtactgagaacgaagcaagttaagaagttttgttcgagtgattatatannnnnnnnacgatatactcccaccaatcttaaata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35400775 |
caaagttgttgctggaagtactgagaacgaagcaagttaagaagttttgttcgagtgattatat-ttttttttacgatatactcccaccaatcttaaata |
35400873 |
T |
|
| Q |
315 |
taagcaaaaaagtaaatagtacatgcatttaaggtcggatggagtataagttccactgcagaagtcattcattgcagaggtggagggaaaatgtgcaaga |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400874 |
taagcaaaaaagtaaatagtac-tgcatttaaggtcggatggagtataagttccactgcagaagtcattcattgcagaggtggagggaaaatgtgcaaga |
35400972 |
T |
|
| Q |
415 |
aaactgttgtatcatttccacatggacgctctcattcttttctttattttgtgcaattgttcattgttgttaannnnnnnnngtgctgtatatagggtaa |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35400973 |
aaactgttgtatcatttccacatggacgctctcattcttttctttattttgtgcaattgttcattgttgttaa-ttttttttgtgctgtatatagggtaa |
35401071 |
T |
|
| Q |
515 |
aattttcaataattattatatgggttgccactaaattccttacgttttagaaaatgcacttcatcttattcaattatgatagtgatatagaaaaatgcac |
614 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35401072 |
aattttcaataattattatatgggctgccactaaattccttacgttttagaaaatgcacttcatcttattcaattatgatagtgatatag-aaaatgcac |
35401170 |
T |
|
| Q |
615 |
ctcttctgaattacactccacaaaagatatattcataatctcctggtttcttatcaatgaagcaaccgagttatctatttttccttgtccaacactcttt |
714 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35401171 |
ttcttctgaattacactccacaaaagatatattcatgatctcct-gtttcttatcaatgaagcaaccgagttatctatttttccttgtccaacactcttt |
35401269 |
T |
|
| Q |
715 |
catctt |
720 |
Q |
| |
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|||||| |
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| T |
35401270 |
catctt |
35401275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 739 - 936
Target Start/End: Original strand, 35401265 - 35401460
Alignment:
| Q |
739 |
tctttcatcatgatttaaatagtaattatgttttagttttgtttatcacatgtgtgtctactactccaactcgccgatattcagtgaaaaggcca-cagc |
837 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
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| T |
35401265 |
tctttcatcttgatttaaatagtaattatgttttagttttgtttatcacatgtgtgtctactactccaactcgccgata-tcagtg-aaaggccaccagc |
35401362 |
T |
|
| Q |
838 |
tagtttca-tccccagcattggcaatggaaactagtaacaacatgacagtctcaaacaataacttcttccacaagcaaccaagtattgagaactttgtta |
936 |
Q |
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|||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
35401363 |
tagtttcattcccaagcatt-gcaatggaaactagtaacaacatgacagtctcgaacaataacttcttccacaagc-accaagtattgacaactttgtta |
35401460 |
T |
|
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