View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0084-INSERTION-5 (Length: 870)

Name: NF0084-INSERTION-5
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0084-INSERTION-5
NF0084-INSERTION-5
[»] chr7 (18 HSPs)
chr7 (8-253)||(41763972-41764218)
chr7 (476-768)||(41763664-41763954)
chr7 (8-146)||(41756122-41756260)
chr7 (253-327)||(22488522-22488596)
chr7 (369-436)||(22488413-22488480)
chr7 (812-861)||(4638249-4638298)
chr7 (813-859)||(5194283-5194329)
chr7 (812-870)||(10573750-10573808)
chr7 (813-870)||(24001053-24001110)
chr7 (813-870)||(39998410-39998467)
chr7 (813-870)||(42538472-42538529)
chr7 (817-870)||(45326026-45326079)
chr7 (812-843)||(1773667-1773698)
chr7 (813-856)||(43317445-43317488)
chr7 (814-844)||(26898469-26898499)
chr7 (812-858)||(44326179-44326225)
chr7 (813-870)||(35069723-35069780)
chr7 (813-870)||(40236921-40236978)
[»] chr4 (15 HSPs)
chr4 (254-327)||(8558030-8558103)
chr4 (369-436)||(8557921-8557988)
chr4 (813-870)||(48463491-48463548)
chr4 (812-870)||(27893883-27893941)
chr4 (813-870)||(27864566-27864623)
chr4 (813-861)||(28988475-28988523)
chr4 (813-870)||(33703143-33703200)
chr4 (813-866)||(35017735-35017788)
chr4 (813-870)||(55966387-55966444)
chr4 (813-869)||(1771308-1771364)
chr4 (812-860)||(31680903-31680951)
chr4 (813-859)||(41878408-41878454)
chr4 (812-870)||(43514727-43514785)
chr4 (813-870)||(27550311-27550368)
chr4 (813-870)||(45490354-45490411)
[»] chr6 (14 HSPs)
chr6 (813-870)||(13743262-13743319)
chr6 (813-870)||(13748762-13748819)
chr6 (813-868)||(3213402-3213457)
chr6 (813-868)||(21293720-21293775)
chr6 (247-301)||(13798461-13798515)
chr6 (813-870)||(9698374-9698431)
chr6 (813-870)||(26670050-26670107)
chr6 (813-869)||(7273377-7273433)
chr6 (813-868)||(33242405-33242460)
chr6 (813-870)||(7292749-7292806)
chr6 (813-870)||(7367551-7367608)
chr6 (813-870)||(21279931-21279988)
chr6 (813-870)||(30014345-30014402)
chr6 (812-869)||(30735983-30736040)
[»] chr3 (15 HSPs)
chr3 (813-870)||(46941055-46941112)
chr3 (813-870)||(42100690-42100747)
chr3 (813-870)||(42394460-42394517)
chr3 (813-870)||(45126969-45127026)
chr3 (812-858)||(27748564-27748610)
chr3 (813-870)||(54237098-54237155)
chr3 (813-861)||(25996270-25996318)
chr3 (815-859)||(29558286-29558330)
chr3 (373-416)||(33508196-33508239)
chr3 (253-324)||(33508290-33508361)
chr3 (813-859)||(47191077-47191123)
chr3 (812-870)||(53581899-53581957)
chr3 (813-870)||(9434126-9434183)
chr3 (813-870)||(24688443-24688500)
chr3 (813-870)||(40808867-40808924)
[»] chr5 (9 HSPs)
chr5 (813-868)||(38470581-38470636)
chr5 (812-870)||(5256996-5257054)
chr5 (813-870)||(7617135-7617192)
chr5 (813-870)||(2614690-2614747)
chr5 (813-870)||(18033984-18034041)
chr5 (813-870)||(22512307-22512364)
chr5 (812-869)||(25915029-25915086)
chr5 (813-870)||(33855084-33855141)
chr5 (813-870)||(41334704-41334761)
[»] chr1 (6 HSPs)
chr1 (813-868)||(37814780-37814835)
chr1 (812-861)||(2497612-2497661)
chr1 (813-870)||(43571127-43571184)
chr1 (812-869)||(4401328-4401386)
chr1 (813-870)||(5489778-5489835)
chr1 (813-870)||(24769540-24769597)
[»] chr8 (12 HSPs)
chr8 (812-870)||(26125636-26125694)
chr8 (812-870)||(29800991-29801049)
chr8 (812-870)||(42295196-42295254)
chr8 (813-870)||(5754905-5754962)
chr8 (813-870)||(11582768-11582825)
chr8 (813-870)||(18066759-18066816)
chr8 (813-870)||(36743524-36743581)
chr8 (819-870)||(31384672-31384723)
chr8 (812-858)||(20148761-20148807)
chr8 (813-870)||(1375544-1375601)
chr8 (813-870)||(29705364-29705421)
chr8 (813-870)||(30660783-30660840)
[»] scaffold0038 (1 HSPs)
scaffold0038 (813-870)||(112657-112714)
[»] chr2 (12 HSPs)
chr2 (813-870)||(19047159-19047216)
chr2 (812-859)||(8896635-8896682)
chr2 (813-870)||(30838634-30838691)
chr2 (813-861)||(34817826-34817874)
chr2 (812-870)||(33229302-33229361)
chr2 (812-854)||(7070417-7070459)
chr2 (812-870)||(43490442-43490500)
chr2 (813-870)||(1750416-1750473)
chr2 (252-301)||(11210277-11210326)
chr2 (813-870)||(12415501-12415558)
chr2 (813-870)||(12427561-12427618)
chr2 (813-870)||(16096749-16096806)
[»] scaffold0119 (1 HSPs)
scaffold0119 (813-870)||(687-744)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 41764218 - 41763972
Alignment:
Q  8 acattggtcctgttggaacatagtctatgtcttgtgtttgttttccatttactgcttttcttattgcagctctagcttgtagtagatcagcttcgactct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41764218 acattggtcctgttggaacatagtctatgtcttgtgtttgttttccatttactgcttttcttattgcagctctagcttgtagtagatcagcttcgactct 41764119  T
Q  108 gtctaagttgctgagctttcctgccaggtttggtttctgctgaaaaccataaga-tttagattcatagaagttgtgttgggtcaaaagtatatttaaatg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41764118 gtctaagttgctgagctttcctgccaggtttggtttctgctgaaaaccataagattttagattcatagaagttgtgttgggtcaaaagtatatttaaatg 41764019  T
Q  207 tctcaaatactcatgttaaannnnnnngacttggatcattttttatt 253  Q
    ||||||||| ||||||||||       ||||||||||||||||||||    
T  41764018 tctcaaatattcatgttaaatttttttgacttggatcattttttatt 41763972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 476 - 768
Target Start/End: Complemental strand, 41763954 - 41763664
Alignment:
Q  476 acacataaactataaattcatcatttacatcaataaagcaacagaaattaacgcagcctgtcttgnnnnnnnctctcttccaaaacacacctaccttttt 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||       ||||||||||||||||||||||||||||    
T  41763954 acacataaactataaattcatcatttacatcaataaagcaacagaaattaatgcaacctgtcttgtttttttctctcttccaaaacacacctaccttttt 41763855  T
Q  576 aataccaaatcattcaaaattattggttcttctgcggaacttaaaacttaagttttgtttttactaacgttaggggttttagagaggaggaaaagtagta 675  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  41763854 aataccaagtcattcaaaattattggttcttctccggaacttaaaacttaagttttg-ttttactaacgttaggggttttagagaggaggaaaaggagta 41763756  T
Q  676 cnnnnnnnnnnngtttagttcaatttttaggagaggagtggagcaaaatcctcacagcatcactttttgtcacggtcgttgtttacattttat 768  Q
                 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41763755 -ttttttttttgttttagttcaatttttaggagaggagtgaagcaaaatcctcatagcatcactttttgtcacggtcgttgtttacattttat 41763664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 41756260 - 41756122
Alignment:
Q  8 acattggtcctgttggaacatagtctatgtcttgtgtttgttttccatttactgcttttcttattgcagctctagcttgtagtagatcagcttcgactct 107  Q
    |||||||||||||||||||||||||||||||||||||| | ||  | |||  |||||||||||||||||||||||||||||||||| ||||||||  |||    
T  41756260 acattggtcctgttggaacatagtctatgtcttgtgttcgattctcgtttcttgcttttcttattgcagctctagcttgtagtagaccagcttcggttct 41756161  T
Q  108 gtctaagttgctgagctttcctgccaggtttggtttctg 146  Q
    ||||||| ||||||  |||| ||  ||||||||||||||    
T  41756160 gtctaagatgctgaattttcttggtaggtttggtttctg 41756122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 22488596 - 22488522
Alignment:
Q  253 tgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatg 327  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22488596 tgaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatg 22488522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 22488480 - 22488413
Alignment:
Q  369 gccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcatgttgtatagcacttctc 436  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  22488480 gccttccgcatgatttgtgtgttgtgtattgtcgtggggataaagagtcgtgttgtatagcacttctc 22488413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 812 - 861
Target Start/End: Complemental strand, 4638298 - 4638249
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacacccca 861  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  4638298 aaaaatgttacatgaacaccttttattcatacactcaattgtacacccca 4638249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 813 - 859
Target Start/End: Complemental strand, 5194329 - 5194283
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccc 859  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||    
T  5194329 aaaatgttacatgaacaccatttattcatacacctcattgtacaccc 5194283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 812 - 870
Target Start/End: Original strand, 10573750 - 10573808
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||| |||||| |||||||||||||   ||||||||||||| ||||||||    
T  10573750 aaaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattagg 10573808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 24001110 - 24001053
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||| | ||||||||    
T  24001110 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagg 24001053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 39998410 - 39998467
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||||||||| ||||| ||||||||   ||||||||||||| ||||||||    
T  39998410 aaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagg 39998467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 42538529 - 42538472
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||| | ||||||||    
T  42538529 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagg 42538472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 817 - 870
Target Start/End: Original strand, 45326026 - 45326079
Alignment:
Q  817 tgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||  |||||||    
T  45326026 tgttacataaacaccttttattcatacatcacattgtacaccccatatattagg 45326079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 843
Target Start/End: Original strand, 1773667 - 1773698
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatac 843  Q
    ||||||||||||||||||||||||||||||||    
T  1773667 aaaaatgttacatgaacaccttttattcatac 1773698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 856
Target Start/End: Original strand, 43317445 - 43317488
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtaca 856  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||    
T  43317445 aaaatgttacatgaacaccatttattcatacacctcattgtaca 43317488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 814 - 844
Target Start/End: Complemental strand, 26898499 - 26898469
Alignment:
Q  814 aaatgttacatgaacaccttttattcataca 844  Q
    |||||||||||||||||||||||||||||||    
T  26898499 aaatgttacatgaacaccttttattcataca 26898469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 812 - 858
Target Start/End: Original strand, 44326179 - 44326225
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacacc 858  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||||    
T  44326179 aaaaatgttacataaacaccctttattcatacatcccattgtacacc 44326225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 35069723 - 35069780
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||  ||||||| ||||  |||||||||||| || ||||||||    
T  35069723 aaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagg 35069780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 40236921 - 40236978
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||| | ||||||    
T  40236921 aaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagg 40236978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 8558103 - 8558030
Alignment:
Q  254 gaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatg 327  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8558103 gaaaaatgcttgatagcacgacagaataacatgcatgaatgcacacgacatatttcaaaccatttgatgaaatg 8558030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 8557988 - 8557921
Alignment:
Q  369 gccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcatgttgtatagcacttctc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8557988 gccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcgtgttgtatagcacttctc 8557921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 48463548 - 48463491
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||| |||||| |||||||||||||||||||||||| |||| ||||||||    
T  48463548 aaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagg 48463491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 812 - 870
Target Start/End: Complemental strand, 27893941 - 27893883
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||||||| ||||||||    
T  27893941 aaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagg 27893883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 27864566 - 27864623
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||| |||||| |||||||||||||  |||||||||||||| ||||||||    
T  27864566 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagg 27864623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 813 - 861
Target Start/End: Original strand, 28988475 - 28988523
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacacccca 861  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  28988475 aaaatgttacatgaacaccctttattcatacacctcattgtacacccca 28988523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 33703143 - 33703200
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||  ||||| | ||||||||||||| ||||||||    
T  33703143 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagg 33703200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 866
Target Start/End: Original strand, 35017735 - 35017788
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtat 866  Q
    ||||||||||||||||||| ||||||| || || ||||||||||||||| ||||    
T  35017735 aaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgtat 35017788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 55966444 - 55966387
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||| |||||| |||||||||||||  ||||||||| |||| ||||||||    
T  55966444 aaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagg 55966387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 813 - 869
Target Start/End: Complemental strand, 1771364 - 1771308
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattag 869  Q
    ||||||||||||||||||| ||||||| ||||   |||||||||||||| |||||||    
T  1771364 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattag 1771308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 812 - 860
Target Start/End: Original strand, 31680903 - 31680951
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacacccc 860  Q
    ||||||||||| | |||||| |||||||||||||| |||||||||||||    
T  31680903 aaaaatgttacgtaaacaccatttattcatacattccattgtacacccc 31680951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 813 - 859
Target Start/End: Original strand, 41878408 - 41878454
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccc 859  Q
    ||||||||||||||||||  ||||||||||||  |||||||||||||    
T  41878408 aaaatgttacatgaacactctttattcatacacctcattgtacaccc 41878454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 812 - 870
Target Start/End: Complemental strand, 43514785 - 43514727
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||||||||||| ||||||| |||| | ||||||||||  || ||||||||    
T  43514785 aaaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagg 43514727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 27550311 - 27550368
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||  |||| | ||||||||||| || ||||||||    
T  27550311 aaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagg 27550368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 45490411 - 45490354
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||||||||| ||||||| ||||||   |||||||||| || ||||||||    
T  45490411 aaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagg 45490354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 13743319 - 13743262
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  13743319 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagg 13743262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 13748819 - 13748762
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  13748819 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagg 13748762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 813 - 868
Target Start/End: Original strand, 3213402 - 3213457
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtatta 868  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||||    
T  3213402 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtatta 3213457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 813 - 868
Target Start/End: Complemental strand, 21293775 - 21293720
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtatta 868  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||||    
T  21293775 aaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtatta 21293720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 13798515 - 13798461
Alignment:
Q  247 ttttattgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacga 301  Q
    ||||||||||||||||||||||||||||||   ||||| ||||||| ||||||||    
T  13798515 ttttattgaaaaatgcttgatagcacgacatattaacaagcacgaaggcacacga 13798461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 9698431 - 9698374
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||| | ||||||||    
T  9698431 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagg 9698374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 26670107 - 26670050
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| ||||  |||||||||||| || ||||||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagg 26670050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 813 - 869
Target Start/End: Complemental strand, 7273433 - 7273377
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattag 869  Q
    ||||||||||||||||||| ||||||| ||||  | ||||||||||||| |||||||    
T  7273433 aaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattag 7273377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 868
Target Start/End: Original strand, 33242405 - 33242460
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtatta 868  Q
    ||||||||||||||||||| |||| |||||||  | ||||||||||||| ||||||    
T  33242405 aaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtatta 33242460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 7292749 - 7292806
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||| ||||||| ||||||||||||  ||||| ||||||| | ||||||||    
T  7292749 aaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagg 7292806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 7367551 - 7367608
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||| ||||||| | ||||||||||||  |||||||||| |||| ||||||||    
T  7367551 aaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagg 7367608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 21279931 - 21279988
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||  |||||| ||||| ||| |||| ||||||||    
T  21279931 aaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagg 21279988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 30014345 - 30014402
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||  |||| |||| |||| ||||||||    
T  30014345 aaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattagg 30014402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 869
Target Start/End: Original strand, 30735983 - 30736040
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattag 869  Q
    ||||||||||||||||||| |||||||| ||||   ||||||||||| || |||||||    
T  30735983 aaaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattag 30736040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 46941055 - 46941112
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||    
T  46941055 aaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagg 46941112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 42100690 - 42100747
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| ||||  ||||||||||||||| ||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagg 42100747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 42394517 - 42394460
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||| | ||||||||    
T  42394517 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagg 42394460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 45127026 - 45126969
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||| |||||| |||||||||||||  |||||||||||||| ||||||||    
T  45127026 aaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagg 45126969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 812 - 858
Target Start/End: Original strand, 27748564 - 27748610
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacacc 858  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||||    
T  27748564 aaaaatgttacatgaacaccttttattcatacacctcattatacacc 27748610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 54237098 - 54237155
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||| | ||||||||    
T  54237098 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagg 54237155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 813 - 861
Target Start/End: Original strand, 25996270 - 25996318
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacacccca 861  Q
    ||||||||||||||||||| |||| |||||||| | |||||||||||||    
T  25996270 aaaatgttacatgaacaccctttaatcatacatcttattgtacacccca 25996318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 815 - 859
Target Start/End: Complemental strand, 29558330 - 29558286
Alignment:
Q  815 aatgttacatgaacaccttttattcatacatttcattgtacaccc 859  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  29558330 aatgttatatgaacaccctttattcatacatctcattgtacaccc 29558286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 33508239 - 33508196
Alignment:
Q  373 tccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagt 416  Q
    |||||||||||||||||| ||||||||||||| || ||||||||    
T  33508239 tccgcatgatttgtgtgtggtgtattgtcgtgagggtaaagagt 33508196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 33508361 - 33508290
Alignment:
Q  253 tgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaa 324  Q
    ||||||||||||||||||||||||   | ||| ||||||| ||||||||||||| | || || |||||||||    
T  33508361 tgaaaaatgcttgatagcacgacatagtgacaagcacgaaggcacacgacatatcttaagccgtttgatgaa 33508290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 813 - 859
Target Start/End: Complemental strand, 47191123 - 47191077
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccc 859  Q
    ||||||||||||||||||| ||||||| ||||  |||||||||||||    
T  47191123 aaaatgttacatgaacaccctttattcctacacctcattgtacaccc 47191077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 812 - 870
Target Start/End: Complemental strand, 53581957 - 53581899
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||||||||||  |||||||||||| | ||||||||| || | ||||||||    
T  53581957 aaaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagg 53581899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 9434126 - 9434183
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| |||| ||||||| |  ||||||||||||| | ||||||    
T  9434126 aaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagg 9434183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 24688500 - 24688443
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||  |||| | |||||||||||| | ||||||||    
T  24688500 aaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagg 24688443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 40808867 - 40808924
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||| |||||| ||||||| ||||   |||||||||||||| ||||||||    
T  40808867 aaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagg 40808924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 813 - 868
Target Start/End: Original strand, 38470581 - 38470636
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtatta 868  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||    
T  38470581 aaaatgttacataaacaccctttattcatacattccattgtacaccccatgtatta 38470636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 812 - 870
Target Start/End: Original strand, 5256996 - 5257054
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||||||| ||||||||    
T  5256996 aaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagg 5257054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 7617135 - 7617192
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| |||||||||||| | |||| ||||||||| ||||||||    
T  7617135 aaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagg 7617192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 2614747 - 2614690
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||| | ||||||||    
T  2614747 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagg 2614690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 18033984 - 18034041
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||| | |||||||||||| | ||||||||    
T  18033984 aaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagg 18034041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 22512307 - 22512364
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||| | |||||||||| ||| ||||||||    
T  22512307 aaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagg 22512364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 812 - 869
Target Start/End: Complemental strand, 25915086 - 25915029
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattag 869  Q
    |||||||||||||||||||| ||||||| ||||  ||||||||||||| | |||||||    
T  25915086 aaaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtattag 25915029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 33855141 - 33855084
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| ||||   |||||||||||||| ||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagg 33855084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 41334761 - 41334704
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||||||||  ||||| ||||||| | ||||||||    
T  41334761 aaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagg 41334704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 813 - 868
Target Start/End: Original strand, 37814780 - 37814835
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtatta 868  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||||    
T  37814780 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtatta 37814835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 812 - 861
Target Start/End: Complemental strand, 2497661 - 2497612
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacacccca 861  Q
    ||||||||||||| |||||| |||||||||||||| ||||||||||||||    
T  2497661 aaaaatgttacataaacaccatttattcatacattccattgtacacccca 2497612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 43571184 - 43571127
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| ||||  ||||||||||||||| ||||||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagg 43571127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 812 - 869
Target Start/End: Original strand, 4401328 - 4401386
Alignment:
Q  812 aaaaatgttacatgaacac-cttttattcatacatttcattgtacaccccaggtattag 869  Q
    ||||||| ||||||||||| ||||||||| |||| |||||||||||||||| |||||||    
T  4401328 aaaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattag 4401386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 5489778 - 5489835
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||| | ||||||||    
T  5489778 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagg 5489835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 24769597 - 24769540
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||| |||||||||||||||||  |||| | |||||||||||||| ||||||||    
T  24769597 aaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagg 24769540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 812 - 870
Target Start/End: Original strand, 26125636 - 26125694
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||||| | ||||||||    
T  26125636 aaaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagg 26125694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 812 - 870
Target Start/End: Complemental strand, 29801049 - 29800991
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||||||| ||||||||    
T  29801049 aaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagg 29800991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 812 - 870
Target Start/End: Original strand, 42295196 - 42295254
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||||||||||| ||||||| ||||  ||||||||||| ||| ||||||||    
T  42295196 aaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagg 42295254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 5754905 - 5754962
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||||||||||| |||||  ||||||||| ||||  |||||||    
T  5754905 aaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagg 5754962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 11582768 - 11582825
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||| | ||||||||    
T  11582768 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagg 11582825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 18066816 - 18066759
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| |||| |||||||||  |||||||| |||| ||||||||    
T  18066816 aaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagg 18066759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 36743581 - 36743524
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||| | ||||||||    
T  36743581 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagg 36743524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 819 - 870
Target Start/End: Original strand, 31384672 - 31384723
Alignment:
Q  819 ttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattagg 31384723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 812 - 858
Target Start/End: Original strand, 20148761 - 20148807
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacacc 858  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||||    
T  20148761 aaaaatgttacataaacaccctttattcatacatcccattgtacacc 20148807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 1375544 - 1375601
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||| ||||||||||||||||||||||||||    |||||||||||||  |||||||    
T  1375544 aaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagg 1375601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 29705364 - 29705421
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||  ||||   |||||||||||||| ||||||||    
T  29705364 aaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagg 29705421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 30660840 - 30660783
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||  |||||  |||||||||||| | ||||||||    
T  30660840 aaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagg 30660783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 112657 - 112714
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||| | ||||||||    
T  112657 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagg 112714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 19047159 - 19047216
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||| | ||||||||    
T  19047159 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagg 19047216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 812 - 859
Target Start/End: Complemental strand, 8896682 - 8896635
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccc 859  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  8896682 aaaaatgttacatgaacaccctttattcacacattccattgtacaccc 8896635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 30838634 - 30838691
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||  ||||| | ||||||||||||| ||||||||    
T  30838634 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagg 30838691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 813 - 861
Target Start/End: Complemental strand, 34817874 - 34817826
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacacccca 861  Q
    ||||||||||||||||||| |||||||| |||  |||||||||||||||    
T  34817874 aaaatgttacatgaacaccctttattcacacacctcattgtacacccca 34817826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 870
Target Start/End: Original strand, 33229302 - 33229361
Alignment:
Q  812 aaaaatgttacatgaacacc-ttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||| |||||||||||| |||||||| ||||  ||||||||||||||| ||||||||    
T  33229302 aaaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagg 33229361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 812 - 854
Target Start/End: Original strand, 7070417 - 7070459
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgta 854  Q
    |||||||||||||||||||| |||||||||||||  |||||||    
T  7070417 aaaaatgttacatgaacaccctttattcatacatcccattgta 7070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 812 - 870
Target Start/End: Complemental strand, 43490500 - 43490442
Alignment:
Q  812 aaaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    |||||||||||||||||||| ||||||| |||||  |||||||||| | | ||||||||    
T  43490500 aaaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagg 43490442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 1750416 - 1750473
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| ||||   |||||||||||| | ||||||||    
T  1750416 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagg 1750473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 11210326 - 11210277
Alignment:
Q  252 ttgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacga 301  Q
    |||||||||||||||||||||||||   ||||| ||||||| ||||||||    
T  11210326 ttgaaaaatgcttgatagcacgacatactaacaagcacgaaggcacacga 11210277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 12415558 - 12415501
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| |||| |||||||  | ||||||||||||| | ||||||    
T  12415558 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagg 12415501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Complemental strand, 12427618 - 12427561
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| |||| |||||||  | ||||||||||||| | ||||||    
T  12427618 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagg 12427561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 16096749 - 16096806
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| ||||   |||| ||||||||| ||||||||    
T  16096749 aaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagg 16096806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 870
Target Start/End: Original strand, 687 - 744
Alignment:
Q  813 aaaatgttacatgaacaccttttattcatacatttcattgtacaccccaggtattagg 870  Q
    ||||||||||||||||||| ||||||| ||||  |||||||||||| || ||||||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagg 744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 785 times since January 2019
Visitors: 1284