View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084-INSERTION-7 (Length: 749)
Name: NF0084-INSERTION-7
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084-INSERTION-7 |
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Alignment Details
Target: chr7 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 8 - 642
Target Start/End: Complemental strand, 7687950 - 7687309
Alignment:
| Q |
8 |
tgtttgaatgtaaaacatgtaatagacaatttccttcatttcaagccctaggtggtcatagggcaagtcacaagaaaccaaggttgatgggagaaaatat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7687950 |
tgtttgaatgtaaaacatgtaatagacaatttccttcatttcaagccctaggtggtcatagggcaagtcacaagaaaccaaggttgatgggagaaaatat |
7687851 |
T |
|
| Q |
108 |
tgatggtcaattgctacatacacccccaaagcctaaaacacatgagtgttctatttgtggattggagtttgcaataggacaagctttaggtggccacatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7687850 |
tgatggtcaattgctacatacacccccaaagcctaaaacacatgagtgttctatttgtggattggagtttgcaataggacaagctttaggtggccacatg |
7687751 |
T |
|
| Q |
208 |
aggagacatagagctgcaaatatgaacggaaataaaaacatgcacaattctaataatactatgagttgtagcagtggtggtggtggtgatagtagtattg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7687750 |
aggagacatagagctgcaaatatgaacggaaataaaaacatgcacaattctaataatactatgagttgtagcagtggtggtggtggtgatagtagtatcg |
7687651 |
T |
|
| Q |
308 |
attcttcacaaaagatgaaagctagaaacaagagagttttggttttggatttggatttgaatttgactccctttgagaatgatatggagtttctgaagat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7687650 |
attcttcacaaaagatgaaagctagaaacaagagagttttggttttggatttggatttgaatttgactccctttgagaatgatatggagtttctgaagat |
7687551 |
T |
|
| Q |
408 |
tggaaaggcaactgctaatttgattgattattttcattgaatgttttgaatacttcattatttgatttgagagttagttagtgt-------ataaattat |
500 |
Q |
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| T |
7687550 |
tggaaaggcaactgctaatttgattgattattttcattgaatgttttgaatacttcattatttgatttgagagttagttagtgtatcatagataaattat |
7687451 |
T |
|
| Q |
501 |
atccttcttattttagtctatagnnnnnnnccttcatgaaatatagtctatacttatgtatacttttatataatcatactcaatgaaatttcgttcatta |
600 |
Q |
| |
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| T |
7687450 |
atcctttttattttagtctatagtttttttccttcatgaaatatagtctatacttatgtatacttttatataatcatactcaatgaaatttcgttcatta |
7687351 |
T |
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| Q |
601 |
atttctttggaatatatagaattagttagaacgtcgtgatat |
642 |
Q |
| |
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| T |
7687350 |
atttctttggaatatatagaattagttagaacgccgtcatat |
7687309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 134 - 278
Target Start/End: Original strand, 32504352 - 32504493
Alignment:
| Q |
134 |
caaagcctaaaacacatgagtgttctatttgtggattggagtttgcaataggacaagctttaggtggccacatgaggagacatagagctgcaaatatgaa |
233 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||| |||||||| ||||||| || |
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| T |
32504352 |
caaagcctaaaacacttgaatgttctatttgtggattggagtttgcaataggacaagctttaagcggctacatgagaagatatagagcttcaaatataaa |
32504451 |
T |
|
| Q |
234 |
cggaaataaaaacatgcacaattctaataatactatgagttgtag |
278 |
Q |
| |
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|| |||| || ||| |||||| ||||||||||||||||||||| |
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| T |
32504452 |
cgaaaat---aatatgaacaattttaataatactatgagttgtag |
32504493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 40689683 - 40689759
Alignment:
| Q |
12 |
tgaatgtaaaacatgtaatagacaatttccttcatttcaagccctaggtggtcatagggcaagtcacaagaaaccaa |
88 |
Q |
| |
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|||||| |||||||| || ||| ||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
40689683 |
tgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaa |
40689759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 52052789 - 52052864
Alignment:
| Q |
140 |
ctaaaacacatgagtgttctatttgtggattggagtttgcaataggacaagctttaggtggccacatgaggagaca |
215 |
Q |
| |
|
||||||| |||| ||||||||||||||||| || |||| ||||||||||||||| ||||| |||||||| ||||| |
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|
| T |
52052789 |
ctaaaacgcatgcatgttctatttgtggattagaatttggaataggacaagctttgggtggtcacatgagaagaca |
52052864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 29199927 - 29199964
Alignment:
| Q |
46 |
tttcaagccctaggtggtcatagggcaagtcacaagaa |
83 |
Q |
| |
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| T |
29199927 |
tttcaagccctaggtggtcacagggcaagtcacaagaa |
29199964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 29206901 - 29206938
Alignment:
| Q |
46 |
tttcaagccctaggtggtcatagggcaagtcacaagaa |
83 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
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| T |
29206901 |
tttcaagccctaggtggtcacagggcaagtcacaagaa |
29206938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 20926074 - 20926000
Alignment:
| Q |
12 |
tgaatgtaaaacatgtaatagacaatttccttcatttcaagccctaggtggtcatagggcaagtcacaagaaacc |
86 |
Q |
| |
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|||||| ||||||||||| ||| |||||||| |||||||| | |||||||| |||||||||||||| ||||| |
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| T |
20926074 |
tgaatgcaaaacatgtaacagaacttttccttcttttcaagctttgggtggtcacagggcaagtcacaaaaaacc |
20926000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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