View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0084-INSERTION-8 (Length: 635)
Name: NF0084-INSERTION-8
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084-INSERTION-8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 7 - 441
Target Start/End: Complemental strand, 37492352 - 37491918
Alignment:
| Q |
7 |
aatgaaacgaaatgaaatggaatggattggatcagaatggatcggattggacggaacacagcttctgtaatctgaactgctttgctccttatcctttgcc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37492352 |
aatgaaacgaaatgaaatggaatggattggatcggaatggatcggattggacggaacacagcttctgtaatctgaactgctttgctccttatcctttgcc |
37492253 |
T |
|
| Q |
107 |
atttcaagtaaaacaaccaaagaaatcaaagcatcattacaaaaataagagtagcatcattctaatttgaaattaaatgtaaacagaatgatcttaacca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37492252 |
atttcaagtaaaacaaccaaagaaatcaaagcatcattacaaaaataagagtagcatcattctgatttgaaattaaatgtaaacagaatgattttaacca |
37492153 |
T |
|
| Q |
207 |
ctatgcagtatgcacatacaccatgatctaatcataaaacgttgttatactatcaatgattcaattttgatgaggccttatcatctgtttaaaaagatta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37492152 |
ctatgcagtatgcacatacaccatgatctaatcataaaacgttgttatactatcaatgattcaattttgatgaggccttatcatatgtttaaaaagatta |
37492053 |
T |
|
| Q |
307 |
actttgatgcactaaaacttttcacactgtcacacaaccattaaacatcatttgtatgactaaggtttatatgactaaaatcacatatatgtaacgatcg |
406 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37492052 |
attttgatgcactaaaacttttcacactgtcacacaaccattaaacatcatttgtatgactaaggtttatatgactaaaatcacatatatgtaatgatcg |
37491953 |
T |
|
| Q |
407 |
ctagtagatgatacgaagcacggacacactgacac |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
37491952 |
ctagtagatgatacgaagcacggacacactgacac |
37491918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 437 - 635
Target Start/End: Complemental strand, 37491854 - 37491655
Alignment:
| Q |
437 |
gacaccggggtacgccttcgatcagaagtgtaattgctac-tatatatatacaagacataagatttgaagaagaaaaagaaattgagattaatccttacc |
535 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37491854 |
gacaccggggtacaccttccatcagaagtgtatttgctatatatatatatacaagacataagatttgaaaaagaaaaagaaattgagattaatccttacc |
37491755 |
T |
|
| Q |
536 |
aaaccaagaatgtggaatccccctacccccaagaaacgctgctgttacaacaaaaatcacccaagatcaagaaacacaaattccattaatgagaatgaaa |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37491754 |
aaaccaagaatgtggaatccccctacccccaagaaacgctgctgttacaacaaaaatcacccaagatcaagaaacacaaattccattaatgagaatgaaa |
37491655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 760 times since January 2019
Visitors: 1284