View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0084-Insertion-10 (Length: 360)

Name: NF0084-Insertion-10
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0084-Insertion-10
NF0084-Insertion-10
[»] chr2 (9 HSPs)
chr2 (8-360)||(21433256-21433608)
chr2 (8-171)||(27028265-27028428)
chr2 (8-165)||(26989452-26989609)
chr2 (166-298)||(27152167-27152300)
chr2 (8-171)||(27075691-27075854)
chr2 (8-158)||(27152431-27152578)
chr2 (295-360)||(27152036-27152101)
chr2 (295-360)||(26989150-26989215)
chr2 (295-360)||(27076060-27076125)
[»] chr6 (2 HSPs)
chr6 (8-165)||(34691527-34691684)
chr6 (295-360)||(34691225-34691290)
[»] chr4 (2 HSPs)
chr4 (26-103)||(50172941-50173018)
chr4 (317-360)||(50173321-50173362)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 21433608 - 21433256
Alignment:
Q  8 ctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21433608 ctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggcc 21433509  T
Q  108 attctttgcctatgctccaatacaaagagtctacctctggcgatatctattgtttcatcatatataaaaagccataaaaatccagaccatcaagaaagag 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21433508 attctttgcctatgctccaatacgaagagtctacctctggcgatatctattgtttcatcatatataaaaagccataaaaatccagaccatcaagaaagag 21433409  T
Q  208 tcgtaaggaaattcactcatgaggatgatgctagttttaggagatgaatctactctaataaatgagtttgaaataccctaattctacttctatgcgatga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21433408 tcgtaaggaaattcactcatgaggatgatgctagttttaggagatgaatctactctaataaatgagtttgaaataccctaattctacttctatgtgatga 21433309  T
Q  308 tgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtctttta 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21433308 tgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtctttta 21433256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 27028428 - 27028265
Alignment:
Q  8 ctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggcc 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  27028428 ctctaacgagtaccgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggacaaagggcctcaacttggtc 27028329  T
Q  108 attctttgcctatgctccaatacaaagagtctacctctggcgatatctattgtttcatcatata 171  Q
    |||  ||||  ||||||||| |  ||||| |||||| | | |||||||||||||||||||||||    
T  27028328 attacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcatcatata 27028265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 26989609 - 26989452
Alignment:
Q  8 ctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggcc 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  26989609 ctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggacaaagggcctcaacttggtc 26989510  T
Q  108 attctttgcctatgctccaatacaaagagtctacctctggcgatatctattgtttcat 165  Q
    |||  ||||  ||||||||| |  ||||| |||||| | | |||||||||||||||||    
T  26989509 attacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcat 26989452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 27152300 - 27152167
Alignment:
Q  166 catatataaaaagccataaaaatccagaccatcaagaaagagtcgtaaggaaattcactcatgaggatgatgctagttttaggagatgaatctactcta- 264  Q
    |||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||     
T  27152300 catatataaaaagccataaaaacccagacaatcaagaaagagttgtaaggaaattcactcatgaggatggtgctatttttaggagatgaatttactctat 27152201  T
Q  265 ataaatgagtttgaaataccctaattctacttct 298  Q
    ||||||||||||||||| ||||||||||||||||    
T  27152200 ataaatgagtttgaaatgccctaattctacttct 27152167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 27075691 - 27075854
Alignment:
Q  8 ctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggcc 107  Q
    ||||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |    
T  27075691 ctctaatgaatattgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttgtttaagaaatgtgcggacaaagggcctcaacttggtc 27075790  T
Q  108 attctttgcctatgctccaatacaaagagtctacctctggcgatatctattgtttcatcatata 171  Q
    |||  |||| ||||| |||| |  ||||| |||||| | | |||||||||||||||||||||||    
T  27075791 attacttgcatatgcgccaacatgaagaggctacctttagagatatctattgtttcatcatata 27075854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 27152578 - 27152431
Alignment:
Q  8 ctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggcc 107  Q
    ||||| ||| ||| |||||  ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||  |    
T  27152578 ctctagtgaatactgccgaatacccatggtgtagatgtacatttcaaacacttcacttgcttctttaagaaatgtacggacgaagggcctcaacttgttc 27152479  T
Q  108 attctttgcctatgctccaatacaaagagtctacctctggcgatatctatt 158  Q
    ||||||||| ||   |||||||| ||||| ||||||||||| |||||||||    
T  27152478 attctttgcata---tccaatacgaagaggctacctctggcaatatctatt 27152431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 27152101 - 27152036
Alignment:
Q  295 ttctatgcgatgatgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtctttta 360  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27152101 ttctatgtgatgatgtgcaggttggtacttgcaattgcagaataatacaatgatatctgtctttta 27152036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 26989215 - 26989150
Alignment:
Q  295 ttctatgcgatgatgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtctttta 360  Q
    ||||||| ||||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||    
T  26989215 ttctatgtgatgatgtgcagcatggtacttgcaaatgcagaataatacaatgatatctgtctttta 26989150  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 27076060 - 27076125
Alignment:
Q  295 ttctatgcgatgatgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtctttta 360  Q
    ||||||| ||||||||| || |||||| |||||| ||||||||||| ||||||||| |||||||||    
T  27076060 ttctatgtgatgatgtgcagcttggtagttgcaaatgcagaataattcaatgatatatgtctttta 27076125  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 34691684 - 34691527
Alignment:
Q  8 ctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggcc 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  34691684 ctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggacaaagggcctcaacttggtc 34691585  T
Q  108 attctttgcctatgctccaatacaaagagtctacctctggcgatatctattgtttcat 165  Q
    |||  ||||  ||||||||| |  ||||| |||||| | | |||||||||||||||||    
T  34691584 attacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcat 34691527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 34691290 - 34691225
Alignment:
Q  295 ttctatgcgatgatgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtctttta 360  Q
    ||||||| ||||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||    
T  34691290 ttctatgtgatgatgtgcagcatggtacttgcaaatgcagaataatacaatgatatctgtctttta 34691225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 50172941 - 50173018
Alignment:
Q  26 atcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaactt 103  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  50172941 atcacccatggtgtagatgtacatctcaaacatttcacttgcttctttaagaaatgtacggacaaagggcctcaactt 50173018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 50173321 - 50173362
Alignment:
Q  317 tggtacttgcaattgcagaataatacaatgatatctgtctttta 360  Q
    ||||||||||||||||||||||  |||| |||||||||||||||    
T  50173321 tggtacttgcaattgcagaata--acaacgatatctgtctttta 50173362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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