View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0084-Insertion-3 (Length: 1027)

Name: NF0084-Insertion-3
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0084-Insertion-3
NF0084-Insertion-3
[»] chr6 (20 HSPs)
chr6 (7-992)||(33386503-33387486)
chr6 (7-703)||(33283047-33283727)
chr6 (7-513)||(33261032-33261511)
chr6 (546-739)||(33261510-33261701)
chr6 (490-662)||(33357835-33358006)
chr6 (612-683)||(33397765-33397836)
chr6 (612-683)||(33408676-33408747)
chr6 (855-951)||(33261811-33261907)
chr6 (612-757)||(33281973-33282109)
chr6 (301-410)||(33417407-33417516)
chr6 (862-949)||(33282144-33282231)
chr6 (855-949)||(33283867-33283961)
chr6 (862-951)||(33397945-33398034)
chr6 (535-625)||(33418460-33418550)
chr6 (535-625)||(33302889-33302979)
chr6 (862-951)||(33408855-33408944)
chr6 (54-124)||(33408430-33408500)
chr6 (87-136)||(33281805-33281855)
chr6 (54-124)||(33397519-33397589)
chr6 (171-216)||(33417466-33417511)
[»] scaffold0428 (5 HSPs)
scaffold0428 (7-703)||(4803-5490)
scaffold0428 (612-757)||(12143-12279)
scaffold0428 (862-949)||(12021-12108)
scaffold0428 (889-951)||(5619-5680)
scaffold0428 (87-136)||(12397-12447)
[»] chr2 (6 HSPs)
chr2 (354-696)||(17441816-17442164)
chr2 (301-482)||(17442165-17442352)
chr2 (159-303)||(17442020-17442170)
chr2 (167-293)||(17442165-17442297)
chr2 (73-160)||(17442571-17442658)
chr2 (775-834)||(17441694-17441754)


Alignment Details
Target: chr6 (Bit Score: 830; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 7 - 992
Target Start/End: Original strand, 33386503 - 33387486
Alignment:
Q  7 aaaaatatgattgatttttgtcgtaatttcgaaagaaacnnnnnnntacatacaatcagtatttccatatgtaaaatactaatgagataaattagcagaa 106  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386503 aaaaatatgattgatttttgtcgtaatttcgaaagaaacaaaaaaatacatacaatcagtatttccatatgtaaaatactaatgagataaattagcagaa 33386602  T
Q  107 aaagtgtgagatagaaaactagaaccttctccttcttgagcatctggtgcacttgaggtattcaataattgaatttacagcatctaagtcttcttcagaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386603 aaagtgtgagatagaaaactagaaccttctccttcttgagcatctggtgcacttgaggtattcaataattgaatttacagcatctaagtcttcttcagaa 33386702  T
Q  207 accaaacttttggcatctgaatttacagtgtccgtgtcgtatcggatgtccgtatccgtgctaccttgtttgcaacagttgtcgaggaaccgaccaacca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386703 accaaacttttggcatctgaatttacagtgtccgtgtcgtatcggatgtccgtatccgtgctaccttgtttgcaacagttgtcgaggaaccgaccaacca 33386802  T
Q  307 gtgagtcattttcgacattgcttgttgcaatatctgtctgaataggttcttcaataatttaaattacagcatctgaatcttctgcagaaaccaaactttc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33386803 gtgagtcattttcgacattgcttgttgcaatatctgtctgaataggttcttcaataatttaaattacagcatctgaatcttcttcagaaaccaaactttc 33386902  T
Q  407 agcatctgaatttacagtgtccatgtcgtatctgatgtccgtatccgtgctaccttgttggcaaaagttgttgaggaaccgaccaatgaatcgacaaatg 506  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386903 agcatctgaatttacagtgtccatgtcgtatctgatgttcgtatccgtgctaccttgttggcaaaagttgttgaggaaccgaccaatgaatcgacaaatg 33387002  T
Q  507 atatggaggtttgagannnnnnnctgttgagattcagtagaaacttcatctgcaacaggtgaatctgctgcctccacggatacttctctttctgtggctg 606  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387003 atatggaggtttgagatttttttctgttgagattcagtagaaacttcatctgcaacaggtgaatctgctgcctccacggatacttctctttctgtggctg 33387102  T
Q  607 atatggaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgataaagtgttcctaaaattgttgttgtctatgaaacacagacacaga 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387103 atatggaggttcgagatttatttctgtggatgacatgaatgcagatctcagtgataaagtgttcctaaaattgttgttgtctatgaaacacagacacaga 33387202  T
Q  707 aatcgaaaacgacacggagattacaacctaacacaaatttaaaacccccaccaaacggcacatccacaccgcaaattataaaattcagtataaattgaaa 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387203 aatcgaaaacgacacggagattacaacctaacacaaatttaaaacccccaccaaacggcacatccacaccgcaaattataaaattcagtataaattgaaa 33387302  T
Q  807 atc-aacaaacatagtctcacttctgcca--caaatcaaggnnnnnnnnntatgaatgatataaagttagcaagattcttttgaa-tatcttcaggtacc 902  Q
    ||| |||||||||||||||||||||||||   |||||||||          |||||||||||||||||||||||||||||||||| |||||||| |||||    
T  33387303 atcaaacaaacatagtctcacttctgccaacaaaatcaaggaaaaaaa---atgaatgatataaagttagcaagattcttttgaattatcttca-gtacc 33387398  T
Q  903 tctgcttgcggttgacaacagagattggttttgcggttaacttgttatccactggttgaaatttttgggatccaatctgttgtttcttct 992  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||| ||||| ||||||||||||||||    
T  33387399 tctgcttgcggttgacaacagagattgtttttgcggttaacttgttat-cacttgttgaattttttgtgatcc-atctgttgtttcttct 33387486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 703
Target Start/End: Original strand, 33283047 - 33283727
Alignment:
Q  7 aaaaatatgattgatttttgtcgtaatttcgaaagaaacnnnnnnntacatacaatcagtatttccatatgtaaaatactaatgagataaattagcagaa 106  Q
    ||||||||||||||||||||| |||||||||||||| |        ||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  33283047 aaaaatatgattgatttttgttgtaatttcgaaagaga-aaaaaaatacatacaatcagtatttccatatgtaaaatactaatgagataaattattagaa 33283145  T
Q  107 aaagtgtgagatagaaaactagaaccttctccttcttgagcatctggtgcacttgaggtattcaataattgaatttacagcatctaagtcttcttcagaa 206  Q
    ||||||||||||||||||  |||||||||||||||||||| | |||||||| ||||||||       ||||  ||||||||||| |||||||||||| ||    
T  33283146 aaagtgtgagatagaaaagaagaaccttctccttcttgaggagctggtgcatttgaggta-------attg--tttacagcatccaagtcttcttcataa 33283236  T
Q  207 accaaacttttggcatctgaatttacagtgtccgtgtcgtatcggatgtccgt------atccgtgctaccttgtttgcaacagttgtcgaggaaccgac 300  Q
    || |||||||  |||||||| ||||||||||| |||||||||| |||||||||      ||||||||||||||||| ||||||||| |||||||||||||    
T  33283237 actaaactttcagcatctgagtttacagtgtctgtgtcgtatctgatgtccgtgtccgtatccgtgctaccttgttggcaacagttttcgaggaaccgac 33283336  T
Q  301 caaccagtgagtcattttcgacattgcttgttgcaatatctgtctgaataggttcttcaataatttaaattacagcatctgaatcttctgcagaaaccaa 400  Q
    ||||  || ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||   |||||||||    
T  33283337 caactggtaagtcagtttcgacattgcatgttgcaatatctgtctgaatagcttcttcaataattgaaattacagcatctgaatcttcctgagaaaccaa 33283436  T
Q  401 actttcagcatctgaatttacagtgtccatgtcgtatctgatgtccgtatccgtgctaccttgttggcaaaagttgttgaggaaccgaccaatgaatcga 500  Q
    ||||||||||||||||| ||| |||||| ||||            |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  33283437 actttcagcatctgaatctacggtgtccgtgtc------------cgtatccgtgttaccttgttggcaacagttgctgaggaaccgaccaatgaatcga 33283524  T
Q  501 caaatgatatggaggtttgagannnnnnnctgttgagattcagtagaaacttcatctgcaacaggtgaatctgctgcctccacggatacttctctttctg 600  Q
    | ||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||    
T  33283525 ccaatgatatggaggttcgagatttttttctgttgagattcagtagaaacttcatctgcaacaggtgaatccggtgcctccgcggatacttctgtttctg 33283624  T
Q  601 tggctgatatggaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgataaagtgttcctaaaattgttgttgtctatgaaacacaga 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  33283625 tggctgatatggaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgatatagtgttccttaaaatgttgttgtctatgaaacacaga 33283724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 513
Target Start/End: Original strand, 33261032 - 33261511
Alignment:
Q  7 aaaaatatgattgatttttgtcgtaatttcgaaagaaacnnnnnnntacatacaatcagtatttccatatgtaaaatactaatgagataaattagcagaa 106  Q
    ||||||||||||||||||||| |||||||||||||| |        ||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  33261032 aaaaatatgattgatttttgttgtaatttcgaaagaga-aaaaaaatacatacaatcagtatttccatatgtaaaatactaatgagataaattattagaa 33261130  T
Q  107 aaagtgtgagatagaaaactagaaccttctccttcttgagcatctggtgcacttgaggtattcaataattgaatttacagcatctaagtcttcttcagaa 206  Q
    ||| ||||||||||||||  |||||||||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||| |||||||||||| ||    
T  33261131 aaattgtgagatagaaaagaagaaccttctccttcttgaggatctggtgcatttgaggtcttcaataattg--tttacagcatccaagtcttcttcataa 33261228  T
Q  207 accaaacttttggcatctgaatttacagtgtccgtgtcgtatcggatgtccgtatccgtgctaccttgtttgcaacagttgtcgaggaaccgaccaacca 306  Q
    || |||||||  |||||||||||||||||||||            ||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  33261229 actaaactttcagcatctgaatttacagtgtcc------------atgtccgtatccgtgctaccttgttggcaacagttgtcgaggaaccgaccaactg 33261316  T
Q  307 gtgagtcattttcgacattgcttgttgcaatatctgtctgaataggttcttcaataatttaaattacagcatctgaatcttctgcagaaaccaaactttc 406  Q
    |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||  ||| |||||||||||    
T  33261317 gtgagtcagtttcgacattgcatgttgcaatatctgtctgaatagcttcttcaataattgaaattacagcatctgaatcttctttagataccaaactttc 33261416  T
Q  407 agcatctgaatttacagtgtccatgtcgtatctgatgtccgtatccgtgctaccttgttggcaaaagttgttgaggaaccgaccaatgaatcgacaaatg 506  Q
    ||||||||||||||||||||||             |||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  33261417 agcatctgaatttacagtgtcc------------gtgtccgtatctgtgctaccttgttggcaacagttgctgaggaaccgaccaatgaattgaccaatg 33261504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 546 - 739
Target Start/End: Original strand, 33261510 - 33261701
Alignment:
Q  546 gaaacttcatctgcaacaggtgaatctgctgcctccacggatacttctctttctgtggctgatatggaggttcgagatttatttctgtggatgacatgaa 645  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33261510 gaaacttcatctgcagcaggtgaatctggtgcctccgcggatacttctgtttctgtggctgatatggaggttcgagatttatttctgtggatgacatgaa 33261609  T
Q  646 tgcagatttcagtgataaagtgttcctaaaattgttgttgtctatgaaacacagacacagaaatcgaaaacgacacggagattacaacctaaca 739  Q
    ||||||||||| ||||| |  ||| || ||| ||||||||||||||||||||||||||||| | |||||||| ||  || ||||||||||||||    
T  33261610 tgcagatttcaatgatata--gttacttaaaatgttgttgtctatgaaacacagacacagacaccgaaaacggcaaagaaattacaacctaaca 33261701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 490 - 662
Target Start/End: Original strand, 33357835 - 33358006
Alignment:
Q  490 caatgaatcgacaaatgatatggaggtttgagannnnnnnctgttgagattcagtagaaacttcatctgcaacaggtgaatctgctgcctccacggatac 589  Q
    |||||||||||| ||||||||||||||| ||||       |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |    
T  33357835 caatgaatcgaccaatgatatggaggttcgagatttttt-ctgtggagattcagtagaaacttcatctgcaacaggtgaatctggtacctccacggattc 33357933  T
Q  590 ttctctttctgtggctgatatggaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgata 662  Q
    |||| ||||| ||||||||||||||||| ||||| | ||||||||||||| ||||| ||| ||||||||||||    
T  33357934 ttctgtttctttggctgatatggaggtttgagatatttttctgtggatgatatgaaagcatatttcagtgata 33358006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 612 - 683
Target Start/End: Original strand, 33397765 - 33397836
Alignment:
Q  612 gaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgataaagtgttcctaaaattgttgt 683  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  33397765 gaggtttgagatttatttctgtggatgacatgaatgcagatttcagtgataaagtgttccttaaaatgttgt 33397836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 612 - 683
Target Start/End: Original strand, 33408676 - 33408747
Alignment:
Q  612 gaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgataaagtgttcctaaaattgttgt 683  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  33408676 gaggtttgagatttatttctgtggatgacatgaatgcagatttcagtgataaagtgttccttaaaatgttgt 33408747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 855 - 951
Target Start/End: Original strand, 33261811 - 33261907
Alignment:
Q  855 atgaatgatataaagttagcaagattcttttgaat-atcttcaggtacctctgcttgcggttgacaacagagattggttttgcggttaacttgttatc 951  Q
    |||||| ||||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  33261811 atgaataatataaaattaacaagattcttttgaattatcttcag-tacctctgcttgcggttgaaaacagagattgtttttgcgtttgacttgttatc 33261907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 612 - 757
Target Start/End: Original strand, 33281973 - 33282109
Alignment:
Q  612 gaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgataaagtgttcctaaaattgttgttgtctatgaaacacagaca-cagaaatc 710  Q
    |||||| ||||||| ||  ||||||||||||||||||||||||| |||||||||||||||| |||    |||||||||||||||||||||| ||||   |    
T  33281973 gaggtttgagattttttcttgtggatgacatgaatgcagatttccgtgataaagtgttccttaaa---atgttgtctatgaaacacagacaccaga---c 33282066  T
Q  711 gaaaacgacacggagattacaacctaacacaaatttaaaacccccac 757  Q
    |    |  |||||| ||||||||||||||||||||||||||||||||    
T  33282067 g----cagcacggaaattacaacctaacacaaatttaaaacccccac 33282109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 33417407 - 33417516
Alignment:
Q  301 caaccagtgagtcattttcgacattgcttgttgcaatatctgtctgaataggttcttcaataatttaaattacagcatctgaatcttctgcagaaaccaa 400  Q
    ||||| |||| ||| ||||||| |||||||||||||||||||||||||||| ||| || |||||| || ||||||||||| |||||||| | ||| |||     
T  33417407 caaccggtgaatcagtttcgacgttgcttgttgcaatatctgtctgaatagcttcctcgataattgaatttacagcatctaaatcttcttctgaagccag 33417506  T
Q  401 actttcagca 410  Q
    ||||||||||    
T  33417507 actttcagca 33417516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 862 - 949
Target Start/End: Original strand, 33282144 - 33282231
Alignment:
Q  862 atataaagttagcaagattcttttgaat-atcttcaggtacctctgcttgcggttgacaacagagattggttttgcggttaacttgtta 949  Q
    ||||||||||| ||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  33282144 atataaagttaacaaaattcttttgaattatcttcag-tacctctgcttgcagttgacaacagagattgtttttgcggttgacttgtta 33282231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 855 - 949
Target Start/End: Original strand, 33283867 - 33283961
Alignment:
Q  855 atgaatgatataaagttagcaagattcttttgaat-atcttcaggtacctctgcttgcggttgacaacagagattggttttgcggttaacttgtta 949  Q
    |||||| ||||||| ||| |||||||||||||||| |||||||| |||| |||||||| ||||||||||||||||| |||||||||| ||||||||    
T  33283867 atgaataatataaaattaacaagattcttttgaattatcttcag-taccgctgcttgcagttgacaacagagattgtttttgcggttgacttgtta 33283961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 862 - 951
Target Start/End: Original strand, 33397945 - 33398034
Alignment:
Q  862 atataaagttagcaagattcttttgaat-atcttcaggtacctctgcttgcggttgacaacagagattggttttgcggttaacttgttatc 951  Q
    ||||||||||| ||| |||||||||||| |||||||| |||||||||| ||||||||||||| |||||| ||||||||| |||||||||||    
T  33397945 atataaagttaacaaaattcttttgaattatcttcag-tacctctgctagcggttgacaacaaagattgtttttgcggtcaacttgttatc 33398034  T

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Target: chr6; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 535 - 625
Target Start/End: Original strand, 33418460 - 33418550
Alignment:
Q  535 gagattcagtagaaacttcatctgcaacaggtgaatctgctgcctccacggatacttctctttctgtggctgatatggaggttcgagattt 625  Q
    ||||||||  |||||||||||| |||||||||||||||  | ||||||||||||||||  ||||||||||||||||| | |||||||||||    
T  33418460 gagattcaccagaaacttcatcggcaacaggtgaatcttgtacctccacggatacttccgtttctgtggctgatatgaaagttcgagattt 33418550  T

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Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 535 - 625
Target Start/End: Original strand, 33302889 - 33302979
Alignment:
Q  535 gagattcagtagaaacttcatctgcaacaggtgaatctgctgcctccacggatacttctctttctgtggctgatatggaggttcgagattt 625  Q
    |||||||| |||||||||||||   |||||||||||||  | ||||||| ||||||||  |||||||||||||| || |||||||||||||    
T  33302889 gagattcactagaaacttcatcgataacaggtgaatcttgtacctccacagatacttccgtttctgtggctgatttgaaggttcgagattt 33302979  T

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Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 862 - 951
Target Start/End: Original strand, 33408855 - 33408944
Alignment:
Q  862 atataaagttagcaagattcttttgaat-atcttcaggtacctctgcttgcggttgacaacagagattggttttgcggttaacttgttatc 951  Q
    ||||||||||| ||| |||||||||||| |||||||| |||||||||| ||||||||||||| |||||| |||| ||||  ||||||||||    
T  33408855 atataaagttaacaaaattcttttgaattatcttcag-tacctctgctagcggttgacaacaaagattgtttttccggtcgacttgttatc 33408944  T

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Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 33408430 - 33408500
Alignment:
Q  54 acatacaatcagtatttccatatgtaaaatactaatgagataaattagcagaaaaagtgtgagatagaaaa 124  Q
    ||||||||||| || ||||||||||||| ||  |||| ||||||||||||||||||| |||||||| ||||    
T  33408430 acatacaatcaatagttccatatgtaaattatgaatgcgataaattagcagaaaaagcgtgagataaaaaa 33408500  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 33281805 - 33281855
Alignment:
Q  87 aatgagataaattagcagaaaaagtgtgagatagaaaact-agaaccttct 136  Q
    |||| |||||||||||||||||||||||||||| |||| | ||||||||||    
T  33281805 aatgcgataaattagcagaaaaagtgtgagataaaaaaataagaaccttct 33281855  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 33397519 - 33397589
Alignment:
Q  54 acatacaatcagtatttccatatgtaaaatactaatgagataaattagcagaaaaagtgtgagatagaaaa 124  Q
    ||||||||||| || |||||||| |||| ||  ||||  |||||||||||||||||| |||||||| ||||    
T  33397519 acatacaatcaatagttccatatttaaattatgaatgccataaattagcagaaaaagcgtgagataaaaaa 33397589  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 33417466 - 33417511
Alignment:
Q  171 ataattgaatttacagcatctaagtcttcttcagaaaccaaacttt 216  Q
    ||||||||||||||||||||||| |||||||| ||| ||| |||||    
T  33417466 ataattgaatttacagcatctaaatcttcttctgaagccagacttt 33417511  T

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Target: scaffold0428 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 7 - 703
Target Start/End: Original strand, 4803 - 5490
Alignment:
Q  7 aaaaatatgattgatttttgtcgtaatttcgaaagaaacnnnnnnntacatacaatcagtatttccatatgtaaaatactaatgagataaattagcagaa 106  Q
    ||||||||||||||||||||| |||||||||||||| |        ||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4803 aaaaatatgattgatttttgttgtaatttcgaaagaga-aaaaaaatacatacaatcagtatttccatatgtaaaatactaatgagataaattattagaa 4901  T
Q  107 aaagtgtgagatagaaaactagaaccttctccttcttgagcatctggtgcacttgaggtattcaataattgaatttacagcatctaagtcttcttcagaa 206  Q
    ||||||||||||||||||  |||||||||||||||||||| | |||||||| ||||||| |||||||||||  ||||||||||| |||||||||||| ||    
T  4902 aaagtgtgagatagaaaagaagaaccttctccttcttgaggagctggtgcatttgaggtcttcaataattg--tttacagcatccaagtcttcttcaaaa 4999  T
Q  207 accaaacttttggcatctgaatttacagtgtccgtgtcgtatcggatgtccgt------atccgtgctaccttgtttgcaacagttgtcgaggaaccgac 300  Q
    || |||||||  |||||||| ||||||||||| |||||||||| |||||||||      ||||||||||||||||| |||||||||||||||||||||||    
T  5000 actaaactttcagcatctgagtttacagtgtctgtgtcgtatctgatgtccgtgtccgtatccgtgctaccttgttggcaacagttgtcgaggaaccgac 5099  T
Q  301 caaccagtgagtcattttcgacattgcttgttgcaatatctgtctgaataggttcttcaataatttaaattacagcatctgaatcttctgcagaaaccaa 400  Q
    ||||  || ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||   |||||||||    
T  5100 caactggtaagtcagtttcgacattgcatgttgcaatatctgtctgaatagcttcttcaataattgaaattacagcatctgaatcttcctgagaaaccaa 5199  T
Q  401 actttcagcatctgaatttacagtgtccatgtcgtatctgatgtccgtatccgtgctaccttgttggcaaaagttgttgaggaaccgaccaatgaatcga 500  Q
    |||||||||||||||||||||||||||| ||||            |||||| |||||||||||||||||| ||||| |||||||||||||||||||| ||    
T  5200 actttcagcatctgaatttacagtgtccgtgtc------------cgtatctgtgctaccttgttggcaacagttgctgaggaaccgaccaatgaattga 5287  T
Q  501 caaatgatatggaggtttgagannnnnnnctgttgagattcagtagaaacttcatctgcaacaggtgaatctgctgcctccacggatacttctctttctg 600  Q
    | ||||||||||||||| ||||       |||||||||||||||||||||||||| ||||||||||||||  | ||||||| ||||||||||  ||||||    
T  5288 ccaatgatatggaggttcgagatttttttctgttgagattcagtagaaacttcatttgcaacaggtgaattcggtgcctccgcggatacttcagtttctg 5387  T
Q  601 tggctgatatggaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgataaagtgttcctaaaattgttgttgtctatgaaacacaga 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  5388 tggctgatatggaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgatatagtgttccttaaaatgttgttgtctatgaaacacaga 5487  T

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Target: scaffold0428; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 612 - 757
Target Start/End: Complemental strand, 12279 - 12143
Alignment:
Q  612 gaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgataaagtgttcctaaaattgttgttgtctatgaaacacagaca-cagaaatc 710  Q
    |||||| ||||||| ||  ||||||||||||||||||||||||| |||||||||||||||| |||    |||||||||||||||||||||| ||||   |    
T  12279 gaggtttgagattttttcttgtggatgacatgaatgcagatttccgtgataaagtgttccttaaa---atgttgtctatgaaacacagacaccaga---c 12186  T
Q  711 gaaaacgacacggagattacaacctaacacaaatttaaaacccccac 757  Q
    |    |  |||||| ||||||||||||||||||||||||||||||||    
T  12185 g----cagcacggaaattacaacctaacacaaatttaaaacccccac 12143  T

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Target: scaffold0428; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 862 - 949
Target Start/End: Complemental strand, 12108 - 12021
Alignment:
Q  862 atataaagttagcaagattcttttgaat-atcttcaggtacctctgcttgcggttgacaacagagattggttttgcggttaacttgtta 949  Q
    ||||||||||| ||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  12108 atataaagttaacaaaattcttttgaattatcttcag-tacctctgcttgcagttgacaacagagattgtttttgcggttgacttgtta 12021  T

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Target: scaffold0428; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 889 - 951
Target Start/End: Original strand, 5619 - 5680
Alignment:
Q  889 tatcttcaggtacctctgcttgcggttgacaacagagattggttttgcggttaacttgttatc 951  Q
    ||||||||| ||||||||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  5619 tatcttcag-tacctctgcttgcggttgaaaacagagattgtttttgcgtttgacttgttatc 5680  T

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Target: scaffold0428; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 12447 - 12397
Alignment:
Q  87 aatgagataaattagcagaaaaagtgtgagatagaaaact-agaaccttct 136  Q
    |||| |||||||||||||||||||||||||||| |||| | ||||||||||    
T  12447 aatgcgataaattagcagaaaaagtgtgagataaaaaaataagaaccttct 12397  T

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Target: chr2 (Bit Score: 185; Significance: 1e-99; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 354 - 696
Target Start/End: Complemental strand, 17442164 - 17441816
Alignment:
Q  354 tcttcaataatttaaattacagcatctgaatcttctgcagaaaccaaactttcagcatctgaatttacagtgtccatgtcgtatctgatgtcc------g 447  Q
    |||||||||||| || ||||||||||| | |||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||||      |    
T  17442164 tcttcaataattgaatttacagcatctaagtcttcttcagaaaccaaacttttagcatctgaatttatagtgtccgtgtcgtatccggtgtccatgtctg 17442065  T
Q  448 tatccgtgctaccttgttggcaaaagttgttgaggaaccgaccaatgaatcgacaaatgatatggaggtttgagannnnnnnctgttgagattcagtaga 547  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||  |||       |||| |||||||||||||    
T  17442064 tatcagtgctaccttgttggcaacagttgttgaggaactgaccaatgaatcgaccaatgatatggaggttcaagatttttttctgtggagattcagtaga 17441965  T
Q  548 aacttcatctgcaacaggtgaatctgctgcctccacggatacttctctttctgtggctgatatggaggttcgagatttatttctgtggatgacatgaatg 647  Q
    ||||||||||| |||||||||||||| | ||||||| |||||||||  ||||||||||||||||| |||||||||||| ||||||||||||||||| |||    
T  17441964 aacttcatctgtaacaggtgaatctggtacctccacagatacttctgcttctgtggctgatatggcggttcgagatttttttctgtggatgacatggatg 17441865  T
Q  648 cagatttcagtgataaagtgttcctaaaattgttgttgtctatgaaaca 696  Q
    || |||||||||||||||||||||| ||| | |||||||||||||||||    
T  17441864 caaatttcagtgataaagtgttccttaaaatattgttgtctatgaaaca 17441816  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 301 - 482
Target Start/End: Complemental strand, 17442352 - 17442165
Alignment:
Q  301 caaccagtgagtcattttcgacattgcttgttgcaatatctgtctgaataggttcttcaataatttaaattacagcatctgaatcttctgcagaaaccaa 400  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||| || ||||||||||| | || ||| || |||||||    
T  17442352 caaccggtgagtcagtttcgacattgcttgttgcaatatctgtctgaatagtcttttcaataattgaatttacagcatctaagtcctcttcaaaaaccaa 17442253  T
Q  401 actttcagcatctgaatttacagtgtccatgtcgtatctg------atgtccgtatccgtgctaccttgttggcaaaagttgttgagg 482  Q
    |||||||||||||||||||||||||||  ||| ||||| |      |||||||||||||||||||||||||||||| |||||||||||    
T  17442252 actttcagcatctgaatttacagtgtctgtgttgtatccggtgtccatgtccgtatccgtgctaccttgttggcaacagttgttgagg 17442165  T

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Target: chr2; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 159 - 303
Target Start/End: Complemental strand, 17442170 - 17442020
Alignment:
Q  159 ttgaggtattcaataattgaatttacagcatctaagtcttcttcagaaaccaaacttttggcatctgaatttacagtgtccgtgtcgtatcgg------a 252  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |      |    
T  17442170 ttgaggtcttcaataattgaatttacagcatctaagtcttcttcagaaaccaaacttttagcatctgaatttatagtgtccgtgtcgtatccggtgtcca 17442071  T
Q  253 tgtccgtatccgtgctaccttgtttgcaacagttgtcgaggaaccgaccaa 303  Q
    |||| ||||| ||||||||||||| ||||||||||| ||||||| ||||||    
T  17442070 tgtctgtatcagtgctaccttgttggcaacagttgttgaggaactgaccaa 17442020  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 17442297 - 17442165
Alignment:
Q  167 ttcaataattgaatttacagcatctaagtcttcttcagaaaccaaacttttggcatctgaatttacagtgtccgtgtcgtatcgg------atgtccgta 260  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||  |||||||||||||||||||| |||| ||||| |      |||||||||    
T  17442297 ttcaataattgaatttacagcatctaagtcctcttcaaaaaccaaactttcagcatctgaatttacagtgtctgtgttgtatccggtgtccatgtccgta 17442198  T
Q  261 tccgtgctaccttgtttgcaacagttgtcgagg 293  Q
    |||||||||||||||| ||||||||||| ||||    
T  17442197 tccgtgctaccttgttggcaacagttgttgagg 17442165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 17442658 - 17442571
Alignment:
Q  73 atatgtaaaatactaatgagataaattagcagaaaaagtgtgagatagaaaactagaaccttctccttcttgagcatctggtgcactt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  | |||||||||||    
T  17442658 atatgtaaaatactaatgagataaattagcagaaaaagtgtgagatagaaaacaagaaccttttccttcttgaagagctggtgcactt 17442571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 775 - 834
Target Start/End: Complemental strand, 17441754 - 17441694
Alignment:
Q  775 ccgcaaattataaaattcagtataaattgaaaatca-acaaacatagtctcacttctgcca 834  Q
    ||||||||||||||||||||| |||| || |||||| ||||||| |||||||||| |||||    
T  17441754 ccgcaaattataaaattcagtctaaaatgcaaatcagacaaacaaagtctcacttgtgcca 17441694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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