View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0084-Insertion-6 (Length: 787)

Name: NF0084-Insertion-6
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0084-Insertion-6
NF0084-Insertion-6
[»] chr8 (1 HSPs)
chr8 (8-787)||(35059605-35060398)


Alignment Details
Target: chr8 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 8 - 787
Target Start/End: Original strand, 35059605 - 35060398
Alignment:
Q  8 aaaactaacttattacaaattcaccattccaagaggaagtccttctgaatatcactatcatcactcgtgtgttaatttgtgtgtatctatgagatcgaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35059605 aaaactaacttattacaaattcaccattccaagaggaagtccttctcaatatcactatcatcactcgtgtgttaatttgtgtgtatctatgagatccaaa 35059704  T
Q  108 tcaaaataaacaatggttgagtgagtccattaatataaataaa----cgtgcatacatgcgtgacaagtagtgataccaatctccctccccattgcaatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||||||||||||    ||||||||||    
T  35059705 tcaaaataaacaatggttgagtgagtccattaatataaataaataaacgtgcatacatgcgtgacaagtcgtgataccaatctccc----cattgcaatc 35059800  T
Q  204 atgtcccac---caccaccgcatccttctggtaacgtacccagctcaaggccacataaacccagcccttcaatttgccaagcgactcatatcaatgggtg 300  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35059801 atgtcccaccaccaccaccgcatccttctggtaacgtacccagctcaaggccacataaacccagcccttcaatttgccaagcgactcatatcaatgggtg 35059900  T
Q  301 cacatgtcactcttcctatcaccctccacctctaccgtcgtctaatcctcctcaatccatccataaccaccatctccaacctctccataacccccttctc 400  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35059901 cacatgtcactcttcccatcaccctccacctctaccgtcgtttaatcctcctcaatccatccataaccaccatctccaacctctccataacccccttctc 35060000  T
Q  401 cgatggctacgacgacggtttcatcgccatcacaaacaccgacgctgatttccaccaatacacctcacagttcaacacccgtggctccgacttcatcacc 500  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35060001 cgatggctacaacgacggtttcatcgccatcacaaacaccgacgctgatttccatcaatacacctcacagttcaacacccgtggctccgacttcatcacc 35060100  T
Q  501 aatctcatactctctgccaaacaagaatccaaacctttcacttgcttactctacaccataatcattccttgggctccacgagttgctcgtggtttcaacc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35060101 aatctcatactctctgccaaacaagaatccaaacctttcacttgcttactctacaccataatcattccttgggctccacgagtagctcgtggtttcaacc 35060200  T
Q  601 tccgctcagctaaactctggattgaacccgccacagtgtttgatattctctattactactttcatggttatagtaacccatatcaat------------a 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||            |    
T  35060201 tccgctcagctaaactctggattgaacccgccacagtgtttgatattctctattactactttcatggttatagtaa-ccatatcaataaccaaaaccaaa 35060299  T
Q  689 accaaaaccaaactaccattgaattaccaggattgcccttcacactatcgccacgtgacataccttcttttttatttacctcaaatcctagtgtgttgt 787  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35060300 accaaaaccaaactaccattgaattaccaggattgcccttcacactatcgccacgtgacataccttcttttttatttacctcaaatcctagtgtgttgt 35060398  T

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