View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084-Insertion-9 (Length: 574)
Name: NF0084-Insertion-9
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084-Insertion-9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 153 - 574
Target Start/End: Original strand, 43746111 - 43746541
Alignment:
| Q |
153 |
agaatccccaaatatcattaatcaaagcttaggccaaggtagaagaagtacaatggagaaaacgaaaacgaaaacaaagacaacacaagccagcaccgaa |
252 |
Q |
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| T |
43746111 |
agaatccccaaatatcattaatcaaagcttaggccaaggtagaagaagtacaatggagaaaacgaaaacgaaaacaaagacaacacaagccagcaccgaa |
43746210 |
T |
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| Q |
253 |
acactgaagggaaaaacttacaaccttgttaaccatcgtctaattcagaatcatgagatttatacatgaaaacctaatacatacataaaataaagattaa |
352 |
Q |
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| T |
43746211 |
acactgaagggaaaaacttacaaccttgttaaccatcgtctaattcagaatcatgagatttatacatgaaaaccta----atacataaaataaagattaa |
43746306 |
T |
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| Q |
353 |
aaaagaaatgtggttattacttatagttacaataa-------------ggttgtttcttgtagccaggggtgaaaaataaatgtaacagaaaggataaag |
439 |
Q |
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| T |
43746307 |
aaaagaaatgtggttattacttatagttacaataaatgatgatgacagtgttgtttcttgtagcaaggggtgaaaaataaatgtaacagaaaggataaag |
43746406 |
T |
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| Q |
440 |
tgaaagaagaagatttctttgagtgtgattagaaacgagaaggaaatggcagtgacagtgagtatgggtgagggccacaaaaacacacttcaaatgccaa |
539 |
Q |
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| T |
43746407 |
tgaaagaagaagatttctttgagtgtgattagaaatgagaaggaaatggcagtgacagtgagtatgggtgagggccacaaaaacacacttcaaatgtcaa |
43746506 |
T |
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| Q |
540 |
aacttgcacaccaagtaataaaggagccttgctgg |
574 |
Q |
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| T |
43746507 |
aacttgcacaccaagtaataaaggagccttgctgg |
43746541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 43745966 - 43746049
Alignment:
| Q |
8 |
gttccaaggtctattcccactgccacatcacgtccttggaattttttcgccatgatctctcaattaatcggaagaaggctggac |
91 |
Q |
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| T |
43745966 |
gttccaaggtctattcccactgccacatcacgtccttggaattttttcgccatgatctctcaagtaatcgaaagaaggctggac |
43746049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 553
Target Start/End: Complemental strand, 42553566 - 42553514
Alignment:
| Q |
501 |
gtatgggtgagggccacaaaaacacacttcaaatgccaaaacttgcacaccaa |
553 |
Q |
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| T |
42553566 |
gtatgggcgagggccacaaaaacacactccaaatgacaaaacttgcacaccaa |
42553514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 28221252 - 28221286
Alignment:
| Q |
175 |
caaagcttaggccaaggtagaagaagtacaatgga |
209 |
Q |
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| T |
28221252 |
caaagcttaggccaaggtacaagaagtacaatgga |
28221286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 28221108 - 28221161
Alignment:
| Q |
30 |
ccacatcacgtccttggaattttttcgccatgatctctcaattaatcggaagaa |
83 |
Q |
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| T |
28221108 |
ccacagcacatccttggtattttttcgtcatgatctctcaagtaatcgaaagaa |
28221161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 39118813 - 39118780
Alignment:
| Q |
339 |
aaaataaagattaaaaaagaaatgtggttattac |
372 |
Q |
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| T |
39118813 |
aaaataaagattaaaaaagaaatgtggttcttac |
39118780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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