View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0084_1D_high_3 (Length: 383)

Name: NF0084_1D_high_3
Description: NF0084_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0084_1D_high_3
NF0084_1D_high_3
[»] chr5 (5 HSPs)
chr5 (23-364)||(38921373-38921714)
chr5 (105-362)||(35968510-35968757)
chr5 (23-105)||(39017179-39017261)
chr5 (106-232)||(16727813-16727939)
chr5 (108-210)||(35967351-35967453)
[»] chr7 (6 HSPs)
chr7 (105-362)||(41739622-41739879)
chr7 (107-186)||(42537718-42537797)
chr7 (105-186)||(45291933-45292014)
chr7 (105-186)||(38516620-38516701)
chr7 (105-186)||(45296058-45296139)
chr7 (97-173)||(40601815-40601891)
[»] chr4 (6 HSPs)
chr4 (105-362)||(30829927-30830183)
chr4 (105-362)||(52190161-52190430)
chr4 (105-232)||(52189186-52189313)
chr4 (306-362)||(31409574-31409630)
chr4 (196-240)||(31409401-31409445)
chr4 (108-230)||(8480884-8481006)
[»] chr1 (6 HSPs)
chr1 (105-354)||(35063434-35063683)
chr1 (105-232)||(26529508-26529635)
chr1 (105-232)||(36573962-36574089)
chr1 (104-191)||(49919676-49919763)
chr1 (140-209)||(35062599-35062668)
chr1 (105-209)||(36575494-36575598)
[»] chr8 (8 HSPs)
chr8 (105-362)||(17864507-17864776)
chr8 (102-230)||(17863463-17863591)
chr8 (105-228)||(3870768-3870891)
chr8 (100-232)||(32565568-32565700)
chr8 (106-228)||(3872224-3872346)
chr8 (103-136)||(5014854-5014887)
chr8 (105-186)||(37241028-37241109)
chr8 (108-136)||(32564510-32564538)
[»] chr3 (10 HSPs)
chr3 (104-243)||(9099559-9099698)
chr3 (105-186)||(37464968-37465049)
chr3 (105-229)||(20997633-20997757)
chr3 (258-354)||(19801946-19802032)
chr3 (104-240)||(19801785-19801919)
chr3 (104-240)||(36163382-36163518)
chr3 (106-240)||(37463680-37463814)
chr3 (101-136)||(18912544-18912579)
chr3 (177-232)||(20884298-20884353)
chr3 (99-244)||(20998933-20999078)
[»] chr2 (4 HSPs)
chr2 (105-240)||(4753528-4753663)
chr2 (105-232)||(31622039-31622166)
chr2 (105-240)||(36669081-36669216)
chr2 (104-230)||(40894807-40894933)
[»] chr6 (5 HSPs)
chr6 (104-239)||(18191745-18191880)
chr6 (105-186)||(9448746-9448827)
chr6 (105-240)||(30758798-30758933)
chr6 (105-155)||(226121-226171)
chr6 (178-240)||(21396367-21396429)
[»] scaffold0115 (4 HSPs)
scaffold0115 (105-191)||(4336-4422)
scaffold0115 (105-191)||(6055-6141)
scaffold0115 (105-191)||(12076-12162)
scaffold0115 (105-191)||(13795-13881)


Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 23 - 364
Target Start/End: Original strand, 38921373 - 38921714
Alignment:
Q  23 cttatttccaattgttcttctttataattcagacaatgaccattacactcatttctctcgtatctcatccatcttttttaatgagtaaaccctcatttgg 122  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38921373 cttatttccaattgttcttatttataattcagacaatgaccattacactcatttctctcgtatctcatccatcttttttaatgagtaaaccctcatttgg 38921472  T
Q  123 gtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgttagtcaaatgcatccaaaa 222  Q
    |||| ||||||||||| ||  |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38921473 gtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaa 38921572  T
Q  223 cgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttcaatcttcttcaatgcccc 322  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38921573 cgttaacttggtgttaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttcaatcttcttcaatgcccc 38921672  T
Q  323 caattccttcatcttctccaacactactcatgaactcatgat 364  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38921673 caattccttcatcttctccaacactactcatgaactcatgat 38921714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 105 - 362
Target Start/End: Complemental strand, 35968757 - 35968510
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    ||||||||||| | |||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||    
T  35968757 gagtaaacccttaattggatccctgaaagtgttgttcgctatcaggcacattcatagatcaatgaaacgaaccaaaaactcccccaattattgttttgtt 35968658  T
Q  205 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttc 304  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
T  35968657 agtcaaatgcatccaaaacgttaacttggtgttaactttgttatactcatagatgagggaccaaaatgacaacaatcatgtttccgccatcatcttct-- 35968560  T
Q  305 aatcttcttcaatgcccccaattccttcatcttctccaacactactcatgaactcatg 362  Q
            |||| ||||| ||||||||||||||||||||| |||||||||||||||||    
T  35968559 --------tcaaggccccgaattccttcatcttctccaactctactcatgaactcatg 35968510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 39017261 - 39017179
Alignment:
Q  23 cttatttccaattgttcttctttataattcagacaatgaccattacactcatttctctcgtatctcatccatcttttttaatg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  39017261 cttatttccaattgttcttctttataattcagacaatgaccattacactcatttctctcatatctcattcatcttttttaatg 39017179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 16727813 - 16727939
Alignment:
Q  106 agtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtta 205  Q
    ||||||||||||||||||||  |||||||||   ||| |||||| ||| |||||  |||||  |||||||| ||||||| |  |||||  |||| |||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgtta 16727912  T
Q  206 gtcaaatgcatccaaaacgttaacttg 232  Q
    |||||||||||||||||| ||||||||    
T  16727913 gtcaaatgcatccaaaacattaacttg 16727939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 35967351 - 35967453
Alignment:
Q  108 taaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctag-atcaatgaaacgaaccaaaaactcctccaatgattgtttcgttag 206  Q
    ||||||||||||||| ||| |||||||     |||||||||| |||| |||| | |||||| |||| ||||||||||||| |||||| ||||| ||||||    
T  35967351 taaaccctcatttggatccctgaaagttcacatcgttatcagccaca-tcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttag 35967449  T
Q  207 tcaa 210  Q
    ||||    
T  35967450 tcaa 35967453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 105 - 362
Target Start/End: Original strand, 41739622 - 41739879
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||||||||||||||| | ||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  41739622 gagtaaaccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 41739721  T
Q  205 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttc 304  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  41739722 agtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggatcaaaatgacaacaatcatgtttctgccatcatctttttc 41739821  T
Q  305 aatcttcttcaatgcccccaattccttcatcttctccaacactactcatgaactcatg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41739822 aatcttcttcaatgcccccaattccttcatcttctccaacactactcatgaactcatg 41739879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 42537718 - 42537797
Alignment:
Q  107 gtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 186  Q
    ||||||||||| |||||||| ||||||||||| ||| ||||||| |||| |||  |||||||||||||||||||||||||    
T  42537718 gtaaaccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactcc 42537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 45292014 - 45291933
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 186  Q
    |||||||||||||||||||||| |||||||||   ||| |||||||||||| |||  ||||| ||| |||||||||||||||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactcc 45291933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 38516620 - 38516701
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 186  Q
    |||||||||||||||||||||| |||||||||   ||| |||||| ||||| ||| |||||| ||| | |||||||||||||    
T  38516620 gagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactcc 38516701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 45296139 - 45296058
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 186  Q
    |||||||||||||||||||||| | |||||||   ||| |||||||||||| | | |||||| ||| |||||||||||||||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactcc 45296058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 40601891 - 40601815
Alignment:
Q  97 tttttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacg 173  Q
    |||||||  ||||||||||||||||||||| |||||||||   ||| |||||||||||| |||||| ||| ||||||    
T  40601891 tttttaaaaagtaaaccctcatttgggtccctgaaagtgtgcctcgctatcaggcacatccctagaacaaggaaacg 40601815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 105 - 362
Target Start/End: Original strand, 30829927 - 30830183
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  30829927 gagtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 30830026  T
Q  205 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttc 304  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  30830027 agtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggaccaaaatgac-acaatcatgtttctgccatcatctttttc 30830125  T
Q  305 aatcttcttcaatgcccccaattccttcatcttctccaacactactcatgaactcatg 362  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  30830126 aatcttcttcaatgccctcaattccttcatcttcttcaacactactcatgaactcatg 30830183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 105 - 362
Target Start/End: Complemental strand, 52190430 - 52190161
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||||||||||||||||| ||||||||    ||| |||||| || || | | ||||||| |||||||||||||||||| ||||||  ||||| |||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgtt 52190331  T
Q  205 agtcaaatgcatccaaaacgttaacttggtattaactctg------------ttatactcatagatgagggaccaaaatgacaacaatcatgtttctgcc 292  Q
    |||||||||||||||||||||||||||||| |||| | ||            ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52190330 agtcaaatgcatccaaaacgttaacttggtgttaaatgtgctgatgtgtccgttatactcatagacgagggaccaaaatgacaacaatcatgtttctgcc 52190231  T
Q  293 atcatcttcttcaatcttcttcaatgcccccaattccttcatcttctccaacactactcatgaactcatg 362  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52190230 ttcatcttcttcaatcttcttcaatgccctcaattccttcatcttctccaacactactcatgaactcatg 52190161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 52189186 - 52189313
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||||||||||||||||| ||||||||    ||| |||||| ||||| ||| ||||||| |||| || |||||||||   |||||  |||| ||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgtt 52189285  T
Q  205 agtcaaatgcatccaaaacgttaacttg 232  Q
    ||||||||||||||||||||||||||||    
T  52189286 agtcaaatgcatccaaaacgttaacttg 52189313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 31409574 - 31409630
Alignment:
Q  306 atcttcttcaatgcccccaattccttcatcttctccaacactactcatgaactcatg 362  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||    
T  31409574 atcttcttcaatgcctccaattccttcatcttctccaacactattcataaactcatg 31409630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 31409401 - 31409445
Alignment:
Q  196 tgtttcgttagtcaaatgcatccaaaacgttaacttggtattaac 240  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  31409401 tgttccgttagtcaaatgcatccaaaacgttaacttggtgttaac 31409445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 8481006 - 8480884
Alignment:
Q  108 taaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgttagt 207  Q
    ||||| |||||||| |||| |||||||||   ||| |||||| ||| | ||| ||||||||||||| |||||||||||| |||| |  | || |||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  208 caaatgcatccaaaacgttaact 230  Q
    ||    |||||||||||||||||    
T  8480906 cattcccatccaaaacgttaact 8480884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 105 - 354
Target Start/End: Complemental strand, 35063683 - 35063434
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||||||||||||||||  ||||||||||| ||  ||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  35063683 gagtaaaccctcatttgggtctctgaaagtgttgctcactatcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaattattgtttcgtt 35063584  T
Q  205 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttc 304  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  35063583 agtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgacaacaatcatgtttctgccttcatcttcttc 35063484  T
Q  305 aatcttcttcaatgcccccaattccttcatcttctccaacactactcatg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35063483 aatcttcttcaatgcccccaattccttcatcttctccaacactactcatg 35063434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 26529508 - 26529635
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||||||||||||||||| |||||||||   ||| |||||| ||| | |||  |||||  |||||||| |||||||||  ||||| |||||  |||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgtt 26529607  T
Q  205 agtcaaatgcatccaaaacgttaacttg 232  Q
    ||||||||||||||||||||||||||||    
T  26529608 agtcaaatgcatccaaaacgttaacttg 26529635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 36573962 - 36574089
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||| ||||||| ||||| |||||||||   ||| |||||  ||| | |||  |||||  |||||||| |||||||||  |||||  |||| ||||    
T  36573962 gagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgtt 36574061  T
Q  205 agtcaaatgcatccaaaacgttaacttg 232  Q
    ||||||||||||||||||||||||||||    
T  36574062 agtcaaatgcatccaaaacgttaacttg 36574089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 49919763 - 49919676
Alignment:
Q  104 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 191  Q
    ||||||||| |||||||||||||||||||||||   ||| |||||| ||| | ||| ||||||||||||| |||||||||||| ||||    
T  49919763 tgagtaaactctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaa 49919676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 35062599 - 35062668
Alignment:
Q  140 tcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgttagtca 209  Q
    |||||||||  ||||| |||  |||||| |||| ||||||||||||| |||||| ||||| |||||||||    
T  35062599 tcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtca 35062668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 36575598 - 36575494
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    ||||||||||||||||| |||| |||||||||   ||| |||||| ||| | | || |||||  |||||||||||||||| |  |||||  |||| ||||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgtt 36575499  T
Q  205 agtca 209  Q
    |||||    
T  36575498 agtca 36575494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 105 - 362
Target Start/End: Complemental strand, 17864776 - 17864507
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||||||||||||| ||||||||||||    ||| |||||| ||||| ||  ||||||  ||||||||||| ||||||  |||||  | ||| |||    
T  17864776 gagtaaaccctcatttggttccttgaaagtgcatctcgctatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgtt 17864677  T
Q  205 agtcaaatgcatccaaaacgttaacttggtattaactctgtt------------atactcatagatgagggaccaaaatgacaacaatcatgtttctgcc 292  Q
    ||||||||||||||||||| |||||||||| |||| | ||||            |||||||||||  |||||||||||||||| ||||||||||||||||    
T  17864676 agtcaaatgcatccaaaacattaacttggtgttaattgtgttgatgtgtccattatactcatagactagggaccaaaatgacagcaatcatgtttctgcc 17864577  T
Q  293 atcatcttcttcaatcttcttcaatgcccccaattccttcatcttctccaacactactcatgaactcatg 362  Q
     |||||||||||||||||||||||||  | ||||||||||||||||| ||||||||||||||||||||||    
T  17864576 ttcatcttcttcaatcttcttcaatgttctcaattccttcatcttcttcaacactactcatgaactcatg 17864507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 17863463 - 17863591
Alignment:
Q  102 aatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttc 201  Q
    ||||||||||||||||||||||||| ||||||||    ||| |||||| ||||| | | ||||||| |||  ||||||||||||||||||||  |||| |    
T  17863463 aatgagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttcc 17863562  T
Q  202 gttagtcaaatgcatccaaaacgttaact 230  Q
    || ||||||||||||||||||||||||||    
T  17863563 gtcagtcaaatgcatccaaaacgttaact 17863591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 3870768 - 3870891
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    ||||||||||||| |||||||| ||||| ||   |||| |||||| ||| | ||||||||||| || |||| |||||||||| |||||  ||||| ||||    
T  3870768 gagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgtt 3870867  T
Q  205 agtcaaatgcatccaaaacgttaa 228  Q
    |||||| | | |||||||||||||    
T  3870868 agtcaatttcgtccaaaacgttaa 3870891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 32565700 - 32565568
Alignment:
Q  100 ttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtt 199  Q
    |||| |||||||||||| ||| ||||| |||||||||   ||| |||||| |   | ||| |||||||  || ||| |||||||||| ||||||   |||    
T  32565700 ttaaggagtaaaccctcgtttaggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaatttaatgaatcaaaaactcccccaatgtacgtt 32565601  T
Q  200 tcgttagtcaaatgcatccaaaacgttaacttg 232  Q
      |||||||||||||||||||||||||||||||    
T  32565600 atgttagtcaaatgcatccaaaacgttaacttg 32565568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 3872346 - 3872224
Alignment:
Q  106 agtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtta 205  Q
    ||||||||||| ||||||||| ||||||||    ||| |||||| ||| | |||  |||||| |||||||||||||||||   ||||| || || |||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgtta 3872247  T
Q  206 gtcaaatgcatccaaaacgttaa 228  Q
    ||||| | | |||||||||||||    
T  3872246 gtcaatttcgtccaaaacgttaa 3872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 5014887 - 5014854
Alignment:
Q  103 atgagtaaaccctcatttgggtccttgaaagtgt 136  Q
    |||||||||||||||||||||||| |||||||||    
T  5014887 atgagtaaaccctcatttgggtccctgaaagtgt 5014854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 37241028 - 37241109
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 186  Q
    ||||||| |||| ||||||| | |||||||||   ||| |||||| ||| ||| | ||||||||||||| ||||||||||||    
T  37241028 gagtaaatcctcgtttgggttcctgaaagtgtatctcgctatcagtcacgttcttggatcaatgaaacgcaccaaaaactcc 37241109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 32564510 - 32564538
Alignment:
Q  108 taaaccctcatttgggtccttgaaagtgt 136  Q
    |||||||||||||||||||||||||||||    
T  32564510 taaaccctcatttgggtccttgaaagtgt 32564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 243
Target Start/End: Original strand, 9099559 - 9099698
Alignment:
Q  104 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 203  Q
    ||||||||||||||||||||||| | |||||||   ||| ||||| |||||| |||  |||||||||||||||||||||||| | ||||| | ||| |||    
T  9099559 tgagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttccgt 9099658  T
Q  204 tagtcaaatgcatccaaaacgttaacttggtattaactct 243  Q
    |||||||||   |||||||||||||||| || ||||||||    
T  9099659 tagtcaaataagtccaaaacgttaacttagtgttaactct 9099698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 37465049 - 37464968
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 186  Q
    ||||||||||| |||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||| |||||||||||||    
T  37465049 gagtaaaccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactcc 37464968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 20997633 - 20997757
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||||||||||||||||| ||||| |||   ||| ||||| |||||| ||  ||||||| |||| |||||||||||||| ||||| | ||||||||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgtt 20997732  T
Q  205 agtcaaatgcatccaaaacgttaac 229  Q
    ||||||||   ||||||||||||||    
T  20997733 agtcaaataagtccaaaacgttaac 20997757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 354
Target Start/End: Original strand, 19801946 - 19802032
Alignment:
Q  258 tgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttcaatcttcttcaatgcccccaattccttcatcttctccaacactactcatg 354  Q
    ||||||||||||||||| ||||| |||||||||||         ||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  19801946 tgagggaccaaaatgaccacaattatgtttctgcc---------ttcaa-cttcttcaatgcccccaattccttcatcttctccatcactactcatg 19802032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 19801785 - 19801919
Alignment:
Q  104 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 203  Q
    ||||||||||||||||  ||||| |||||||||   ||| ||||||  || | | ||||||||| |||||||||||||||||| ||| |  ||| || ||    
T  19801785 tgagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactcccccatt--ttgatttgt 19801882  T
Q  204 tagtcaaatgcatccaaaacgttaacttggtattaac 240  Q
    |||||||||  ||||||||||||||||| || |||||    
T  19801883 tagtcaaatttatccaaaacgttaactttgtgttaac 19801919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 36163382 - 36163518
Alignment:
Q  104 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 203  Q
    |||||||||| |||||||| ||| |||||||||   ||| |||||| |  || |||  ||||||  || ||| |||||||||| ||||||   |||  ||    
T  36163382 tgagtaaaccttcatttggatccctgaaagtgtccctcgctatcagaccaatccctcaatcaatttaatgaatcaaaaactcccccaatgtacgttatgt 36163481  T
Q  204 tagtcaaatgcatccaaaacgttaacttggtattaac 240  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36163482 tagtcaaatgcatccaaaacgttaacttggtgttaac 36163518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 37463680 - 37463814
Alignment:
Q  106 agtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtta 205  Q
    |||||||||||  |||||| | ||||||||||  ||| ||||| |||| | ||| |||||||||||||| |||||||||| || ||||  | || | |||    
T  37463680 agtaaaccctcgcttgggttcctgaaagtgtttctcgctatcaagcacgtccctggatcaatgaaacgatccaaaaactcatctaatgtctcttccatta 37463779  T
Q  206 gtcaaatgcatccaaaacgttaacttggtattaac 240  Q
    ||||  | | ||||||||||||||||||| |||||    
T  37463780 gtcatttacgtccaaaacgttaacttggtgttaac 37463814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 18912544 - 18912579
Alignment:
Q  101 taatgagtaaaccctcatttgggtccttgaaagtgt 136  Q
    |||||||||||||||||||||||||| |||||||||    
T  18912544 taatgagtaaaccctcatttgggtccctgaaagtgt 18912579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 20884298 - 20884353
Alignment:
Q  177 caaaaactcctccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttg 232  Q
    ||||||||||||||||   ||||   ||||||||||||||||||||||||||||||    
T  20884298 caaaaactcctccaatacatgttctcttagtcaaatgcatccaaaacgttaacttg 20884353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 244
Target Start/End: Complemental strand, 20999078 - 20998933
Alignment:
Q  99 tttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgt 198  Q
    |||| |||||||| |||||||| | ||| |||||||||   | |||||||| |||||  ||  |||||||||| |||  ||||||| || ||||| |  |    
T  20999078 tttattgagtaaatcctcatttagatccctgaaagtgtacattgttatcagacacatcactgaatcaatgaaatgaattaaaaacttcttcaatgttgat 20998979  T
Q  199 ttcgttagtcaaatgcatccaaaacgttaacttggtattaactctg 244  Q
    | ||||||| ||||   |||||||||||||||| || |||||||||    
T  20998978 tccgttagttaaataagtccaaaacgttaacttagtgttaactctg 20998933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 4753528 - 4753663
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    |||||||||||| ||||||||| |||||||||   ||| |||||| |   | ||| ||||||| ||| ||| ||||||||||  |||||  ||||| |||    
T  4753528 gagtaaaccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgtt 4753627  T
Q  205 agtcaaatgcatccaaaacgttaacttggtattaac 240  Q
    |||||||||||||||||||||||||||||| |||||    
T  4753628 agtcaaatgcatccaaaacgttaacttggtgttaac 4753663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 31622166 - 31622039
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    ||||||||||| |||||||||| |||||||||   |||||||||  ||| | |||  |||||  |||| ||| |||||||||  ||||| ||||| ||||    
T  31622166 gagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtt 31622067  T
Q  205 agtcaaatgcatccaaaacgttaacttg 232  Q
     |||||||||||||||||||||||||||    
T  31622066 tgtcaaatgcatccaaaacgttaacttg 31622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 240
Target Start/End: Complemental strand, 36669216 - 36669081
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    ||||||||||| |||||| ||| ||||||||    ||| |||||| ||| | |||  |||||  |||| ||| |||||||||  |||||  ||||  |||    
T  36669216 gagtaaaccctaatttggatccatgaaagtgcacctcgctatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgtt 36669117  T
Q  205 agtcaaatgcatccaaaacgttaacttggtattaac 240  Q
    |||||||||||||||||||||||||||| |||||||    
T  36669116 agtcaaatgcatccaaaacgttaacttgatattaac 36669081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 40894933 - 40894807
Alignment:
Q  104 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 203  Q
    ||||||||||||||||||| ||| | |||||||   ||| ||||||| || | ||| |||||||||||||||| ||||||||| ||||||  | || |||    
T  40894933 tgagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 40894834  T
Q  204 tagtcaaatgcatccaaaacgttaact 230  Q
    ||||||    | |||||||||||||||    
T  40894833 tagtcattcacgtccaaaacgttaact 40894807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 18191745 - 18191880
Alignment:
Q  104 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 203  Q
    ||||||||||||||||||||||| |||||||||    || |||||| |   | |||  ||||||  || ||| |||||||||| ||||||  ||||  ||    
T  18191745 tgagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgtatgttatgt 18191844  T
Q  204 tagtcaaatgcatccaaaacgttaacttggtattaa 239  Q
    ||||||||||||||||||||||||||||||||||||    
T  18191845 tagtcaaatgcatccaaaacgttaacttggtattaa 18191880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 9448827 - 9448746
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 186  Q
    |||||||||||||||||||||| |||||||||   ||| |||||| ||||| ||| |||||| ||| |||||||||||||||    
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactcc 9448746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 240
Target Start/End: Complemental strand, 30758933 - 30758798
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 204  Q
    ||||||||||||||||||||||||||||||||   ||| | |||  | | |   | ||||||| ||  ||| ||||||||||  |||||  ||||| |||    
T  30758933 gagtaaaccctcatttgggtccttgaaagtgtccctcgctgtcacacccgtcatttgatcaataaattgaatcaaaaactccctcaatgtatgttttgtt 30758834  T
Q  205 agtcaaatgcatccaaaacgttaacttggtattaac 240  Q
    ||||||||||||||||||| |||||||||| |||||    
T  30758833 agtcaaatgcatccaaaacattaacttggtgttaac 30758798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 226121 - 226171
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacat 155  Q
    ||||||||||||||||||||||||||||||||   ||| ||||||||||||    
T  226121 gagtaaaccctcatttgggtccttgaaagtgtgcctcgctatcaggcacat 226171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 21396367 - 21396429
Alignment:
Q  178 aaaaactcctccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtattaac 240  Q
    ||||||||||||||||  ||||   |||||||||| ||||||||||| ||||||||| |||||    
T  21396367 aaaaactcctccaatgtatgttcttttagtcaaatacatccaaaacgctaacttggtgttaac 21396429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 4336 - 4422
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 191  Q
    |||||||||||| ||||| ||| | |||||||   ||| |||||| ||| | ||||||||||||||||| |||||||||||| ||||    
T  4336 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaa 4422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 6141 - 6055
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 191  Q
    ||||||||||||||||| |||| |||||||||   ||| |||||| | | | ||||||| ||||||||| |||||||||||| ||||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 6055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 12076 - 12162
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 191  Q
    |||||||||||| ||||| ||| | |||||||   ||| |||||| ||| | ||||||||||||||||| |||||||||||| ||||    
T  12076 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaa 12162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 13881 - 13795
Alignment:
Q  105 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 191  Q
    ||||||||||||||||| |||| |||||||||   ||| |||||| | | | ||||||| ||||||||| |||||||||||| ||||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 13795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1257 times since January 2019
Visitors: 1296