View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0084_1D_low_12 (Length: 225)
Name: NF0084_1D_low_12
Description: NF0084_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_1D_low_12 |
 | |
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| [»] scaffold0130 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0319 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0108 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0241 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0023 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0282 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0656 (1 HSPs) |
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| [»] scaffold0040 (2 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
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| [»] scaffold0026 (2 HSPs) |
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| [»] scaffold0423 (1 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 23200950 - 23201150
Alignment:
| Q |
17 |
acatcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
23200950 |
acatcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagccagattttcttcctcctgaaaagacccaagtgtcagtgg |
23201049 |
T |
|
| Q |
117 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23201050 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagcatggtctttatacgggataccccttttgttgaaattaaa |
23201149 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
23201150 |
t |
23201150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 22638191 - 22637983
Alignment:
| Q |
17 |
acatcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgg |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22638191 |
acatcaagtcgaggagcaggaacctttcttttcacccatttggatggaggtgcagaatagccagattttcttcctcctgaaaagacccaagtatcagtgg |
22638092 |
T |
|
| Q |
117 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22638091 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagcatggtctttatacgggataccccttttgttgaaattaaa |
22637992 |
T |
|
| Q |
217 |
tttagggcg |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
22637991 |
tttagggcg |
22637983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 24911762 - 24911563
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||| || |||||||| | |||||| | |||||||||||||| ||||| | ||||||||| | |
|
|
| T |
24911762 |
gtcgaggagcagggatctttctcttcacccatttggttgggggagcagaatatccagatttcttgcctcctgaaaagacacaagtattagtgggggatct |
24911663 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttaggg |
223 |
Q |
| |
|
|| |||||| || |||||||| |||||||| || || ||||||||||| | ||||||||||| || |||| ||||||||||| |||| |||||||||| |
|
|
| T |
24911662 |
tgtagatgggttaaaagttcccctccaattcttccttcgagaatttccaacggaatggtctttgtatgggacaccccttttgtagaaaacaaatttaggg |
24911563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 43018 - 42810
Alignment:
| Q |
17 |
acatcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgg |
116 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43018 |
acatcaagtcgaggagaaggaacctttctcttcacccatttggatggaggggcagaatagccagattttcttcctcctgaaaagacccaagtatcagtgg |
42919 |
T |
|
| Q |
117 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42918 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagcatggtctttatacgggataccccttttgttgaaattaaa |
42819 |
T |
|
| Q |
217 |
tttagggcg |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
42818 |
tttagggcg |
42810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 126880 - 127088
Alignment:
| Q |
17 |
acatcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgg |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
126880 |
acatcaagtcgaggagcaggaacctttcttttcacccatttggatggaggggcagaatagccagattttcttcctcctgaaaagacccaagtatcagtgg |
126979 |
T |
|
| Q |
117 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
126980 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagcatggtctttatacgggataccccttttgttgaaattaaa |
127079 |
T |
|
| Q |
217 |
tttagggcg |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
127080 |
tttagggcg |
127088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 179632 - 179732
Alignment:
| Q |
38 |
acctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtttgcagatggattga |
137 |
Q |
| |
|
|||||||| ||||||||||| | ||| ||||||||||| | |||||| | || |||||||| |||||||| || || ||||| ||||| ||||| ||| |
|
|
| T |
179632 |
acctttcttttcacccatttagttggtggggcagaatatccagatttcttgccccctgaaaacacccaagtatccgtcggggatcttgcaaatggactga |
179731 |
T |
|
| Q |
138 |
a |
138 |
Q |
| |
|
| |
|
|
| T |
179732 |
a |
179732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 13289689 - 13289896
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13289689 |
catcaagtcgaggagtagggacctttctcttcacccatttggatggaggggcagaatagccagattttcttcctcctgaaaagacccaagtgtcagtggg |
13289788 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13289789 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaactaaat |
13289888 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
13289889 |
ttagggcg |
13289896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 14772889 - 14773096
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||| |||||| |||||||| | |||||| | || |||||||||||||| || |||||||| |
|
|
| T |
14772889 |
catcatgtcgaggagcagggatctttctcttcacccatttggttggaggagcagaatatccagatttcttgccacctgaaaagacccaggtatcagtggg |
14772988 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
||| | | ||| || ||||||||||| ||||| ||| || ||||||||||||||| |||||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
14772989 |
ggatctcgtagacgggttgaaagttcccctccagtttttcctttgagaatttccagtagaatggtctttgcgcgggacaccccttttgtcgaaagcaaat |
14773088 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
14773089 |
ttagggcg |
14773096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 18562912 - 18562973
Alignment:
| Q |
47 |
ttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagt |
108 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||| | || ||| | ||||||||||| |
|
|
| T |
18562912 |
ttcacccatttggttggtggggcagaatagccagattttttgccccctaagaagacccaagt |
18562973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 11523 - 11322
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11523 |
gtcgaggattaggaacctttctcttcacccatttggatggaggggcagaataaccagattttcttcctcctgaaaagacccaagtgtcagtgggggaatt |
11424 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttaggg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11423 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagtatgttctttatacgggataccccttttgttgaaattaaatttaggg |
11324 |
T |
|
| Q |
224 |
cg |
225 |
Q |
| |
|
|| |
|
|
| T |
11323 |
cg |
11322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 9512 - 9305
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9512 |
catcaagtcgaggagtaggaacctttctcttcacccatttggatggaggggcagattaaccagattttcttcctcctgaaaagacccaagtgtcagtggg |
9413 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||| |
|
|
| T |
9412 |
ggactttgcagatgggttgaaggttcctctccaatttctcttttgagaatttccagcagaatggtctttgtatgggacaccccttttgctgaaattaaat |
9313 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
||| |||| |
|
|
| T |
9312 |
ttaaggcg |
9305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 23434978 - 23434770
Alignment:
| Q |
17 |
acatcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgg |
116 |
Q |
| |
|
|||||| |||||| |||||| |||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23434978 |
acatcaagtcgagcagcagggacctttcttttcacccatttggatggaggggtagaatagccagattttcttcctcctgaaaagacccaagtatcagtgg |
23434879 |
T |
|
| Q |
117 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
23434878 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggaaaccccttttgttgaaaataaa |
23434779 |
T |
|
| Q |
217 |
tttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
23434778 |
attagggcg |
23434770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 19035507 - 19035706
Alignment:
| Q |
25 |
tcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagttt |
124 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
19035507 |
tcgaggagcaggaactttccttttcacccatttggctggaggggcagaatagccagatttccttcctcctgaaaagacccaagtgtcagtgggg-acttt |
19035605 |
T |
|
| Q |
125 |
gcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttagggc |
224 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19035606 |
gcagacgggttgaaagttcctctccaatttctcttttgagaatttccagcggaatggtctttgtacgggacaccccttttgttgaagttaaatttagggc |
19035705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 27 - 225
Target Start/End: Original strand, 18171964 - 18172162
Alignment:
| Q |
27 |
gaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtttgc |
126 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
18171964 |
gaggagtaggaacctttctcttcacccatttggatggaggggcagaatagccagattttcttcctcctgaaaagacccaagtatcggtgggggagtttgc |
18172063 |
T |
|
| Q |
127 |
agatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttagggcg |
225 |
Q |
| |
|
| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18172064 |
aaatggattgacagttcctctccagtttctcttttgaggatttccagcagaatggtctttgtacgggataccccttttgttgaaattaaatttagggcg |
18172162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 14342984 - 14343185
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||| || | ||| || |||||||||||||||||||||||||| ||||| || || |
|
|
| T |
14342984 |
gtcgaggagcaggaacttttctcttcacccatttggttggaggggcagagtaaccagacttccttcctcctgaaaagacccaagtgtctgtgggagaatt |
14343083 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttaggg |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||| |||| ||||||||||||||||||||||| |
|
|
| T |
14343084 |
agcagacggattgaaagttcctctccaatttctcttttgagaattttcagcagcgtggtctttgtaagggacaccctttttgttgaaattaaatttaggg |
14343183 |
T |
|
| Q |
224 |
cg |
225 |
Q |
| |
|
|| |
|
|
| T |
14343184 |
cg |
14343185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 18133864 - 18134064
Alignment:
| Q |
25 |
tcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagttt |
124 |
Q |
| |
|
||||||||| || || ||||| || |||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
18133864 |
tcgaggagcggggacttttctttttacccatttggttggaggggcagagtagccagactttcttcctcctgaaaagacccaagtgtctgtgggagaatta |
18133963 |
T |
|
| Q |
125 |
gcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttagggc |
224 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| | || |||||||||| ||||| |||||||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
18133964 |
gcaggtggattgaaagttcctccccaattttttttctgagaatttctagcagcatggtctttatatggaacaccccttttgttgaaattaaatttagggc |
18134063 |
T |
|
| Q |
225 |
g |
225 |
Q |
| |
|
| |
|
|
| T |
18134064 |
g |
18134064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 11977233 - 11977434
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||| | ||| || || || || | |||||| | || |||||||| || ||||||| ||||||||| | |
|
|
| T |
11977233 |
gtcgaggggcagggagctttctcttcacccattttgttgggggagcggagtacccagatttcttgccccctgaaaatacacaagtgttagtgggggacct |
11977332 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttaggg |
223 |
Q |
| |
|
||| ||||| ||||||||| |||||||| || | |||||| ||| |||||||| | || || |||| |||||||||||| ||| |||| |||||| |
|
|
| T |
11977333 |
tgcggatgggctgaaagttctcctccaattcttccctcgagaatctcccgcagaatgattcttgtatgggacaccccttttgttaaaactaaagttaggg |
11977432 |
T |
|
| Q |
224 |
cg |
225 |
Q |
| |
|
|| |
|
|
| T |
11977433 |
cg |
11977434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 11227 - 11026
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
||||||||| | |||| ||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11227 |
gtcgaggagtaagaacttttctcttcacccatttggatggagggacagaataaccagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
11128 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttaggg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
11127 |
tgcagatggattgaaagttcctctccaatttttcttttgagaatttccagcagcatggtctttatacgggataaccattttgttgaaattaaatttaggg |
11028 |
T |
|
| Q |
224 |
cg |
225 |
Q |
| |
|
|| |
|
|
| T |
11027 |
cg |
11026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 26064 - 25873
Alignment:
| Q |
34 |
aggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtttgcagatgga |
133 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26064 |
aggaacctttctcttcacccatttggatggaggggcagcataaccagattttcttcctcctgaaaagacccaagtgtcagtgggggaatttgcagatgga |
25965 |
T |
|
| Q |
134 |
ttgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttagggcg |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25964 |
ttgaaagttcctctccaatttttcttttgagaatttccagcagaatgatctttatacgggataccccttttgttgcgattaaatttagggcg |
25873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 13307196 - 13307401
Alignment:
| Q |
17 |
acatcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgg |
116 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13307196 |
acatcaagtcgaggagcaggaacttttctcttcaccaatttggttggaggggcagaatagccagactttcttcctcctgaaaagacccaagtgtcagtgg |
13307295 |
T |
|
| Q |
117 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaa |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||| ||||| || || |
|
|
| T |
13307296 |
gggagtctgcagatggattgaaagttcctctccaatttctcttttgcgaatttccagcagcataatctttatacgggacaccccttttattgaacttcaa |
13307395 |
T |
|
| Q |
217 |
tttagg |
222 |
Q |
| |
|
|||||| |
|
|
| T |
13307396 |
tttagg |
13307401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 10150651 - 10150453
Alignment:
| Q |
27 |
gaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtttgc |
126 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
10150651 |
gaggagcaggaacttttcttttcacccattttgctggaggggcagaatagccagatttccttcctcctgaaaagacccaagtgtcagtgggggacttcgc |
10150552 |
T |
|
| Q |
127 |
agatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttagggcg |
225 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
10150551 |
agacggattgaaggttcctctccaatttctcttttgagaatttcgagcggattggtctttgtaagggacaccccttttgttgaaattgaatttagggcg |
10150453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 14693547 - 14693755
Alignment:
| Q |
17 |
acatcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgg |
116 |
Q |
| |
|
|||||| |||||||||| || || ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||| ||||||||||||| || |||| |
|
|
| T |
14693547 |
acatcaagtcgaggagcggggacttttctcttcacccatttggttggaggggtagagtagccagactttcttcctcctaaaaagacccaagtatctgtgg |
14693646 |
T |
|
| Q |
117 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaa |
216 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||| |||||||||||||||| |
|
|
| T |
14693647 |
gagaatttgcagatggattgaaagttcctctccaatttcttttttgagaatttccagcagcatggtctttatatgggacaccctttttgttgaaattaaa |
14693746 |
T |
|
| Q |
217 |
tttagggcg |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
14693747 |
tttagggcg |
14693755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 7402314 - 7402515
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||| |||||||||||| || | ||| || ||||||||||||||||||| ||||| ||||| || || |
|
|
| T |
7402314 |
gtcgaggggcaggaacttgtctcttcacccatttggttggaggggcagagtaaccagacttctttcctcctgaaaagacccacgtgtccgtgggagaatt |
7402413 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttaggg |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| || | || |||| ||||||||||||||||||||||| |
|
|
| T |
7402414 |
agcagacggattgaaagttcctctccaatttctcttttgataattttcagcagtgtggtctttgtaagagacaccctttttgttgaaattaaatttaggg |
7402513 |
T |
|
| Q |
224 |
cg |
225 |
Q |
| |
|
|| |
|
|
| T |
7402514 |
cg |
7402515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 10782023 - 10781835
Alignment:
| Q |
25 |
tcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagttt |
124 |
Q |
| |
|
||||||||| || || |||||||| |||||||| | |||||||||||| || | ||||||||||||||||||||| |||||||||| ||||| || ||| |
|
|
| T |
10782023 |
tcgaggagcgggtacttttctctttacccatttagttggaggggcagagtaaccagattttcttcctcctgaaaaaacccaagtgttggtgggagaattt |
10781924 |
T |
|
| Q |
125 |
gcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaatt |
213 |
Q |
| |
|
|||| ||||||||||||| | |||||| || ||||||| |||||| | | |||||||||||| || |||||||||||||||||| |
|
|
| T |
10781923 |
gcaggtggattgaaagttttcccccaattccttttttgagtatttccggtggcatggtctttatatggagcaccccttttgttgaaatt |
10781835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 17423175 - 17423383
Alignment:
| Q |
17 |
acatcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgg |
116 |
Q |
| |
|
|||||| ||||| | |||||||| ||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
17423175 |
acatcaagtcgaagggcaggaacttttctcttcacccatttggttggaggagcagaatagccagactttcttcctcccgaaaagacccaagtgtctgtgg |
17423274 |
T |
|
| Q |
117 |
gggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaa |
216 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||| || |||||||| |
|
|
| T |
17423275 |
gagagtttgcagacggattgaaagttcctctccaatttctcttttgagaatttccggcagcatggtctttatatgggacaccccttttattaaaattaaa |
17423374 |
T |
|
| Q |
217 |
tttagggcg |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
17423375 |
tttagggcg |
17423383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 22349086 - 22349293
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||| ||| || |||||||| | |||||| | || ||||||||||||||||| |||| ||| |
|
|
| T |
22349086 |
catcatgtcgaggagcagggatctttctcttcacccatttggatgggggagcagaatatccagatttcttgccccctgaaaagacccaagtatcagcggg |
22349185 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||| |
|
|
| T |
22349186 |
ggattttgcagatgggttgaaagttcctctccaattttttctttgagaatttccagcagaatggtctttgtacgggacaccccttttgtcgaaagcaaat |
22349285 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
22349286 |
ttagggcg |
22349293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 15913991 - 15913900
Alignment:
| Q |
52 |
ccatttggctggaggggcagaatagctagattttcttcctcctgaaaaga-cccaagtgtcagtgggggagtttgcagatggattgaaagtt |
142 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||| | | || ||||||| |||||||||| ||||| || ||||||| |||||||||||| |
|
|
| T |
15913991 |
ccatttagttggaggggcagaatagccagattttttgacaccagaaaagaccccaagtgtctgtgggtgactttgcagggggattgaaagtt |
15913900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 34 - 225
Target Start/End: Original strand, 37931 - 38122
Alignment:
| Q |
34 |
aggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtttgcagatgga |
133 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| ||| | |||||||||||||||||||| ||||||||||| ||||||||| ||||||||| || |
|
|
| T |
37931 |
aggaacctttctcttcacccatttggatgaaggggcagcataaccagattttcttcctcctgaaatgacccaagtgttagtgggggaatttgcagataga |
38030 |
T |
|
| Q |
134 |
ttgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttagggcg |
225 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38031 |
ttgaaagttcctctccaatttttcttttgacaatttccagcagaatgatctttatacgggataccccttttgttgtgattaaatttagggcg |
38122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 127088 - 127289
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||| || |||||||| | |||| | | |||||||||||||||||||| ||||||||||| || |
|
|
| T |
127088 |
gtcgaggagcagggacctttctcttcacccatttggatgggggagcagaatatccagatatcttacctcctgaaaagacccaagtatcagtgggggactt |
127187 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttaggg |
223 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
127188 |
tgcagatggattggaagttcctctccaatttttcctttgagaatttccagcagaatggtctttgtacgggacaccccttttgttgaaagcaaattgaggg |
127287 |
T |
|
| Q |
224 |
cg |
225 |
Q |
| |
|
|| |
|
|
| T |
127288 |
cg |
127289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 21510840 - 21510655
Alignment:
| Q |
40 |
ctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtttgcagatggattgaaa |
139 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||| | ||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
21510840 |
ctttctcttcacccatttggatgggggagcagaatatccagattttttacctcctgaaaagacccaagtatcagtgggggactttgcagatggattgaaa |
21510741 |
T |
|
| Q |
140 |
gttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttagggcg |
225 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| ||||| || ||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
21510740 |
gttcctctccaatttttcctttgagaatttccagcagactggtccttgtacgggacacccctttttttgaaagcaaatttagggcg |
21510655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 11346 - 11139
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||| ||| || |||||||| | |||||| | |||||||||||||||||||| | |||||| |
|
|
| T |
11346 |
catcatgtcgaggagcagtgatctttctcttcacccatttggatgggggagcagaatatccagatttcttacctcctgaaaagacccaagtattagtggg |
11247 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
||| |||||||||| |||||||||||||||| |||| || |||||||||||||||| ||||||||||| || |||| ||||||||||| ||||| |||| |
|
|
| T |
11246 |
ggacattgcagatgggttgaaagttcctctccgatttttcctttgagaatttccagctgaatggtctttgtatgggacaccccttttgtcgaaatgaaat |
11147 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
11146 |
ttagggcg |
11139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 159394 - 159595
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||| || |||||||| | |||||| | |||||||||||||||||||||||||||||||| | |
|
|
| T |
159394 |
gtcgaggagcagggatctttctcttcacccatttggttgggggagcagaatatccagatttcttgcctcctgaaaagacccaagtgtcagtgggggacct |
159493 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttaggg |
223 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || || ||||||||||||| |||||||| || ||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
159494 |
tgcagatgggttgaaagttcccctccaattattccttcgagaatttccagcggaatggtccttgtacgggacaccccttttgtcaaaaccaaatttaggg |
159593 |
T |
|
| Q |
224 |
cg |
225 |
Q |
| |
|
|| |
|
|
| T |
159594 |
cg |
159595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 65124 - 64917
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||| ||| || |||||||| | |||||| | ||||||| |||||||||||| ||| |||| |
|
|
| T |
65124 |
catcatgtcgaggagcagagatctttctcttcacccatttggatgggggagcagaatatccagatttcttacctcctggaaagacccaagtatcaatggg |
65025 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| |||| | ||||||||||||| || ||||||||||| ||||||| |||||||||||||||| ||| |
|
|
| T |
65024 |
ggactttgcagatgggttgaaagttcctctccgattttttctttgagaatttccggccgaatggtctttgtacgggacaccccttttgttgaaagcaaag |
64925 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
64924 |
ttagggcg |
64917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 74302 - 74095
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||| ||| || |||||||| | |||||| | ||||||| |||||||||||| ||| |||| |
|
|
| T |
74302 |
catcatgtcgaggagcagagatctttctcttcacccatttggatgggggagcagaatatccagatttcttacctcctggaaagacccaagtatcaatggg |
74203 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| |||| | ||||||||||||| || ||||||||||| ||||||| |||||||||||||||| ||| |
|
|
| T |
74202 |
ggactttgcagatgggttgaaagttcctctccgattttttctttgagaatttccggccgaatggtctttgtacgggacaccccttttgttgaaagcaaag |
74103 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
74102 |
ttagggcg |
74095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 41380652 - 41380852
Alignment:
| Q |
25 |
tcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagttt |
124 |
Q |
| |
|
||||||||| || || ||| |||| |||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||| || ||| |
|
|
| T |
41380652 |
tcgaggagcgggcacttttttctttacccatttggttggaggggcagagtagccagactttcttcctcctgaaaagacccaagtgttggtgggagaattt |
41380751 |
T |
|
| Q |
125 |
gcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttagggc |
224 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||| |||||||||||||| || | || ||||||||| || ||| ||||||||||||||| || |||||| |
|
|
| T |
41380752 |
gcaggtggattgaaagttcctcccgaatttcttttttgagaatttccggcggcattgtctttatatggagcacctcttttgttgaaattatatctagggc |
41380851 |
T |
|
| Q |
225 |
g |
225 |
Q |
| |
|
| |
|
|
| T |
41380852 |
g |
41380852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 22806160 - 22806367
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||| |||||| |||||||| | |||||| | || |||||||||||||| || |||||||| |
|
|
| T |
22806160 |
catcatgtcgaggagcagggatctttctcttcacccatttggttggaggagcagaatatccagatttcttgccacctgaaaagacccaggtatcagtggg |
22806259 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
||| | |||||||| ||||||||||| ||| | ||| || ||||||||||||||||| |||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
22806260 |
ggacctcgcagatgggttgaaagttcccctctagtttttcctttgagaatttccagcataatggtctttgcgcgggacaccccttttgtcgaaagcaaat |
22806359 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
22806360 |
ttagggcg |
22806367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 5860 - 6067
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||| | |||||| |||||||| | |||||| | || |||||||||||||| || |||||||| |
|
|
| T |
5860 |
catcacgtcgaggagcagggatctttctcttcacccatttagttggaggagcagaatatccagatttcttgccacctgaaaagacccaggtatcagtggg |
5959 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
||| |||| ||||| |||||||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
5960 |
ggaccttgctgatgggttgaaagttctcctccagttttttctttgagaatttccagcagaatggtctttacgcgggacaccccttttgtcgaaagcaaat |
6059 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
6060 |
ttagggcg |
6067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 66841 - 66634
Alignment:
| Q |
18 |
catcaggtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtggg |
117 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||| |||||| |||||||| | |||||| | || |||||||||||||| || |||||||| |
|
|
| T |
66841 |
catcatgtcgaggagcagggatctttctcttcacccatttggttggaggagcagaatatccagatttcttgccacctgaaaagacccaggtatcagtggg |
66742 |
T |
|
| Q |
118 |
ggagtttgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaat |
217 |
Q |
| |
|
||| | | ||| || ||||||||||| ||||| ||| || ||||||||||||||| |||||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
66741 |
ggatctcgtagacgggttgaaagttcccctccagtttttcctttgagaatttccagtagaatggtctttgcgcgggacaccccttttgtcgaaagcaaat |
66642 |
T |
|
| Q |
218 |
ttagggcg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
66641 |
ttagggcg |
66634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0656 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0656
Description:
Target: scaffold0656; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 4908 - 4726
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| | ||| || |||||||| | |||||| | |||||||||||||||||||||||||||||||| | |
|
|
| T |
4908 |
gtcgaggagcagggatctttctcttcacccatttagttgggggagcagaatatccagatttcttgcctcctgaaaagacccaagtgtcagtgggggacct |
4809 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgt |
206 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || || |||||||||||| || ||||| || ||||||| ||||||||||| |
|
|
| T |
4808 |
tgcagatgggttgaaagttcccctccaattcttccttcgagaatttccagtggactggtccttgtacgggacaccccttttgt |
4726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 29482 - 29378
Alignment:
| Q |
30 |
gagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtttgcaga |
129 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
29482 |
gagcaggaacttttcttttcacccattttgctggaggggcggaatagccagatttccttcctcctgaaaagacccaagtgtcagtgagggactttgcaga |
29383 |
T |
|
| Q |
130 |
tggat |
134 |
Q |
| |
|
||||| |
|
|
| T |
29382 |
tggat |
29378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 29378 - 29335
Alignment:
| Q |
182 |
tctttatacgggataccccttttgttgaaattaaatttagggcg |
225 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29378 |
tctttgtacgggacaccccttttgttgaaattaaatttagggcg |
29335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 1724 - 1542
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||| ||||| |||||||| || ||||| | ||||||||||||||||||||||| |||||||| | |
|
|
| T |
1724 |
gtcgaggagcagggatctttctcttcaaccatttggtcggaggagcagaatatctggatttcttgcctcctgaaaagacccaagtgtcggtgggggatct |
1625 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgt |
206 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | || |||||||||||| || ||||| || ||||||| |||| |||||| |
|
|
| T |
1624 |
tgcagatgggttgaaagttcccctccaattctttcttcgagaatttccagtggactggtccttgtacgggacaccctttttgt |
1542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 139301 - 139437
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||| |||||| ||||| || | |||||| | |||||||||||||||||||| | ||||| || || |
|
|
| T |
139301 |
gtcgaggagctgggatctttctcttcacccatttggttggaggagcagagtatccagatttcttgcctcctgaaaagacccaagtatacgtgggagactt |
139400 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttt |
160 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
139401 |
tgcagatgggttgaaagttcctctccaatttttcttt |
139437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 139443 - 139491
Alignment:
| Q |
177 |
aatggtctttatacgggataccccttttgttgaaattaaatttagggcg |
225 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
139443 |
aatggtctttgtacgggacaccccttttgtcgaaaacaaatttagggcg |
139491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0423 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0423
Description:
Target: scaffold0423; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 4969 - 4768
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||||| ||| || |||||||| | ||| ||| | ||| ||| |||||||||||| ||||||||||| | |
|
|
| T |
4969 |
gtcgaggaacagggagctttctcttcacccatttggttgggggagcagaatatccagaatttttgccttctggaaagacccaagtatcagtgggggacct |
4870 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttaggg |
223 |
Q |
| |
|
| | ||||| ||||||||| |||||||| || | ||||| |||||| ||||| | || ||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
4869 |
tacggatgggctgaaagttctcctccaattcttccctcaagaatctccagcggaatgattattgtacgggacaccccttttgtcaaaactaaatttaggg |
4770 |
T |
|
| Q |
224 |
cg |
225 |
Q |
| |
|
|| |
|
|
| T |
4769 |
cg |
4768 |
T |
|
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Target: scaffold0046 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 33449 - 33252
Alignment:
| Q |
24 |
gtcgaggagcaggaacctttctcttcacccatttggctggaggggcagaatagctagattttcttcctcctgaaaagacccaagtgtcagtgggggagtt |
123 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| | ||| | |||||||| | ||||| | | ||||||||||| |||||| ||||||||||||| | |
|
|
| T |
33449 |
gtcgaggaacagggagctttctcttcacccattctgttgggagagcagaatatccagattgtttgcctcctgaaaaaacccaactgtcagtgggggacct |
33350 |
T |
|
| Q |
124 |
tgcagatggattgaaagttcctctccaatttctcttttgagaatttccagcagaatggtctttatacgggataccccttttgttgaaattaaatttag |
221 |
Q |
| |
|
||| ||||| ||||||||| |||||||| || | |||||| || ||| ||||| | || ||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
33349 |
tgcggatgggctgaaagttctcctccaattcttccctcgagaatctcgagcggaatgattcttgtacgggacaccccttttgtcaaaactaaatttag |
33252 |
T |
|
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