View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_1D_low_4 (Length: 313)
Name: NF0084_1D_low_4
Description: NF0084_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_1D_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 40 - 300
Target Start/End: Original strand, 183287 - 183548
Alignment:
| Q |
40 |
acctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183287 |
acctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
183386 |
T |
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| Q |
140 |
ctcgaaccttggctggaggcattt-ctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacct |
238 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183387 |
ctcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacct |
183486 |
T |
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| Q |
239 |
agcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctgatgtccatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
183487 |
agcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctgttgtccatc |
183548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 40 - 300
Target Start/End: Complemental strand, 494229 - 493968
Alignment:
| Q |
40 |
acctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494229 |
acctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
494130 |
T |
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| Q |
140 |
ctcgaaccttggctggaggcattt-ctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacct |
238 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494129 |
ctcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacct |
494030 |
T |
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| Q |
239 |
agcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctgatgtccatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
494029 |
agcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctgttgtccatc |
493968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 40 - 300
Target Start/End: Complemental strand, 18191891 - 18191629
Alignment:
| Q |
40 |
acctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191891 |
acctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
18191792 |
T |
|
| Q |
140 |
ctcgaaccttggctggaggcattt-ctctacccc-ttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacc |
237 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191791 |
ctcgaaccttggctggaggcattttctctacccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacc |
18191692 |
T |
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| Q |
238 |
tagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctgatgtccatc |
300 |
Q |
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| T |
18191691 |
tagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctgttgtccatc |
18191629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 40 - 300
Target Start/End: Complemental strand, 34659228 - 34658967
Alignment:
| Q |
40 |
acctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
139 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34659228 |
acctgtgtcggtttcgggtacaggtaccattttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
34659129 |
T |
|
| Q |
140 |
ctcgaaccttggctggaggcattt-ctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacct |
238 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34659128 |
ctcgaatcttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacct |
34659029 |
T |
|
| Q |
239 |
agcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctgatgtccatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34659028 |
agcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctgttgtccatc |
34658967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 8174994 - 8174936
Alignment:
| Q |
161 |
tttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataa |
220 |
Q |
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|||||||| ||||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
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| T |
8174994 |
tttctctatcccttcttaccctacaaaaacaaggg-caccttgtgtgcttgaaccgataa |
8174936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 40 - 265
Target Start/End: Complemental strand, 14404758 - 14404532
Alignment:
| Q |
40 |
acctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
139 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404758 |
acctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgta |
14404659 |
T |
|
| Q |
140 |
ctcgaaccttggctggaggca-tttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacct |
238 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404658 |
ctcgaaccttggctggagccattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacct |
14404559 |
T |
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| Q |
239 |
agcctcctccgtccctcgggaccaaca |
265 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
14404558 |
agcctcctccgtccctcgggaccaaca |
14404532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 45610202 - 45610235
Alignment:
| Q |
258 |
gaccaacaagaggtagtacaggaatattcacctg |
291 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
45610202 |
gaccaacaagaggtagtacaggaatattcacctg |
45610235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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