View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_high_6 (Length: 841)
Name: NF0084_2D_high_6
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 36 - 611
Target Start/End: Original strand, 40757692 - 40758262
Alignment:
| Q |
36 |
cggacacatgagtgtctggctttcgactagtatattataaggtgaattgatcgtggattgtttttgtttattttgggtaactattatgatagagaataaa |
135 |
Q |
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| T |
40757692 |
cggacacatgagtgtctgtctttcgactagtatattataaggtgaattgatcgtggattgtttttgtttattttggataactattatgatacagaagaaa |
40757791 |
T |
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| Q |
136 |
ctacttagaaatggtccttacacatttaacatgacaaaaggcatacgaacccnnnnnnnnnnnnnnggtacaacgatctctttctctaaaccagtttaga |
235 |
Q |
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| T |
40757792 |
ctacttagaaatggtccttacacatttaacatgacaaaaggcataggaacccttttttttttttt-ggtacaacgatccctttctctaaaccagtttaga |
40757890 |
T |
|
| Q |
236 |
aactaacaagtaggtgatttagtgattagacttgtttataataagccagtagtgtacttcatatacgtggaaaattcacaaaatttcatatcccaaaaca |
335 |
Q |
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| T |
40757891 |
aactaacaagtaggtgatttagtgattagacttgtttataa---gccagtagtgtacttcatatacgtggaaaattcacgaaatttc-tatcccaaaaca |
40757986 |
T |
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| Q |
336 |
tttcactgcttcacaaatcacaaaacatacaccaaactgctacctattttgagcttttaacatataacttttgtagggtcatatgctaacgtgtgctctt |
435 |
Q |
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| T |
40757987 |
tttcactgcttcacaaatcacaaaacatacaccaaactgctacctattttgagcttttaacatataacttttgtagggtcatatgctaacgtgtgctctt |
40758086 |
T |
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| Q |
436 |
agaagttaaggattccaatatatacaaatcaaattacaatcaaattttaatacaaaatgacctatcacgttgtctcttcttgtaggcacactgctatatg |
535 |
Q |
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| T |
40758087 |
agaagttaaggattccaatatatacaaatcaaattacaatcaaattttaatacaaaatgacctatcacgttgtctcttcttgtaggcacactgcaatatg |
40758186 |
T |
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| Q |
536 |
aatgatcagccaccatcatgaatacaatatgaatcagagagacatcagacatgagataaatgatcaaaccactgcc |
611 |
Q |
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| T |
40758187 |
aatgatcagccaccatcatgaatataatatgaatcatagagacatcagacatgagatgaatgatcaaaccactgcc |
40758262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 663 - 823
Target Start/End: Original strand, 40758314 - 40758474
Alignment:
| Q |
663 |
taagcattgtgatattattgatgttgaaagaactgttatgctgatgttatttataccgaaagaataatgtatacacaaggaatctattttcaatagattt |
762 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40758314 |
taagcattgtgatattattgatgttgaaagaattgttatgctgatgttatttatactgaaagaataatgtatacacaaggaatctattttcaatagattt |
40758413 |
T |
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| Q |
763 |
aacattaaaatattacaatggaaaatccagtcaaattttgtgcaagaccgcagtagtaact |
823 |
Q |
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| T |
40758414 |
aacattaaaatattacaatggaaaatccagtcaaattttgtgcaagaccgcagtagtaact |
40758474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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