View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_15 (Length: 831)
Name: NF0084_2D_low_15
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 732; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 1 - 818
Target Start/End: Original strand, 3809686 - 3810484
Alignment:
| Q |
1 |
gtcaaaacgatctacctttcgatctctatctcttgctctgaaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgccattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809686 |
gtcaaaacgatctacctttcgatctctatctcttgctctgaaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgccattca |
3809785 |
T |
|
| Q |
101 |
agtacacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccgaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809786 |
agtacacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccgaagt |
3809885 |
T |
|
| Q |
201 |
ttacttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgcattcggaagaggaggagccaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3809886 |
ttacttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgaattcggaagaggaggagccaca |
3809985 |
T |
|
| Q |
301 |
ccgagcatgtcaaagcaaaatttttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcaggg |
400 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809986 |
ccgaacatgtcaaagcaaaaattttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcaggg |
3810085 |
T |
|
| Q |
401 |
aagattggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtga |
500 |
Q |
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| T |
3810086 |
aagattggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtga |
3810185 |
T |
|
| Q |
501 |
caagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaaca |
600 |
Q |
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| T |
3810186 |
caagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaaca |
3810285 |
T |
|
| Q |
601 |
agacaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaat |
700 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3810286 |
agagaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttg-------------------acctccgaat |
3810366 |
T |
|
| Q |
701 |
tcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaagaatcaatgaagtcaattgatgatcttattcatgcag |
800 |
Q |
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| T |
3810367 |
tcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaagaatcaatgaagtcaattgatgatcttattcatgcag |
3810466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 747
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
660 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
747 |
Q |
| |
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|||||||||| ||||||||| |||| ||||||||||| ||||| || || | |||||||| ||| | ||||| |||| ||||||||| |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 641 - 729
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
641 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
729 |
Q |
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|||||| ||||||| ||||| ||||||||||||||||||||| |||||||| || || || |||||||||||||| ||||| ||||| |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 747
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
660 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
747 |
Q |
| |
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|||||||||| ||||||||| |||| ||||||||||| ||||| || || | |||||||| ||| | ||||| |||| ||||||||| |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 641 - 717
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
641 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
717 |
Q |
| |
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|||||| ||||||| ||||| ||||||||||||||||||||| ||| ||| || ||||| |||||||||||||| |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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