View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_18 (Length: 545)
Name: NF0084_2D_low_18
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_18 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 208 - 545
Target Start/End: Original strand, 1410676 - 1411013
Alignment:
| Q |
208 |
catgatagtgagagtgaagacaaaatcttatcacatgtaaccttaaataatttaacttgtgacaaaattgtcagtgtatacacattagtatacaactttg |
307 |
Q |
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| T |
1410676 |
catgataatgagagtgaagacaaaatcttatcacatgtaaccttaaataatttaacttgtgacaaaattgtcagtgtatacacattagtatacaactttg |
1410775 |
T |
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| Q |
308 |
atatttaaagtttctatgaaattaaaatggtcactctacttggctgtggtagaagtctgataataccatttcagattcatacacattgagagaaagcttc |
407 |
Q |
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| T |
1410776 |
atatttaaagtttctatgaaattaaaatggtcactctacttgactgtggtagaagtctgataataccatttcagattcatacacattgagagaaagcttc |
1410875 |
T |
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| Q |
408 |
aatatcaatcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggc |
507 |
Q |
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| T |
1410876 |
aatctcaatcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggc |
1410975 |
T |
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| Q |
508 |
aatagtaactctagcaaatgtgtgtaccctgcaattta |
545 |
Q |
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| T |
1410976 |
aatagtaactctagcaaatgtgtgtaccctgcaattta |
1411013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 1410493 - 1410368
Alignment:
| Q |
1 |
agaggggtaaacacagcttccaaaatatttgtaagtatttatgttaacagtctctaagcctaaggttttgccttgttggaccatcgagacccaattcacc |
100 |
Q |
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| T |
1410493 |
agaggggtaaacacagcttccaaaatatttgtaagtatttatgttaacagtctctaagcctaaggttttgccttgttggaccatcgagacccaattcacc |
1410394 |
T |
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| Q |
101 |
gaaactttttatcatgagcgtcttta |
126 |
Q |
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| T |
1410393 |
gaaactttttatcatgagcgtcttta |
1410368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 1419833 - 1419912
Alignment:
| Q |
416 |
tcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagt |
495 |
Q |
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| T |
1419833 |
tcatgaattctatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagt |
1419912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 1414284 - 1414365
Alignment:
| Q |
416 |
tcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga |
497 |
Q |
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| T |
1414284 |
tcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga |
1414365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 500
Target Start/End: Original strand, 1408010 - 1408092
Alignment:
| Q |
418 |
atgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaa |
500 |
Q |
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| T |
1408010 |
atgaattctatgagattaattcatgtactttggtttttcaatctgtgtgtgacatttacattcattcaagtcctaagtgagaa |
1408092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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