View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_21 (Length: 499)
Name: NF0084_2D_low_21
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Original strand, 48707045 - 48707507
Alignment:
| Q |
13 |
gagatgaactagcttattttagaccaataccgtgtatgaagtataaactgctactgatgaatcaattgattaaatgatgaatagatgatcgataagacag |
112 |
Q |
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| T |
48707045 |
gagatgaactggcttattttagaccaataccgtgtatgaagtataaactgctactgatgaatcaattgattaaatgatgaatagatgatcgataagacag |
48707144 |
T |
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| Q |
113 |
aagcactatcaagaatgaaacaaaattatgagttggagttcacttcaccggcagggnnnnnnngtaagggataagcgactttggttccacatgactataa |
212 |
Q |
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| T |
48707145 |
aagcactatcaagaatgaaacaaaattatgagttggagttcacttcaccggcagggaaaaaaagtaagggataagcgactttggttccacatgactataa |
48707244 |
T |
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| Q |
213 |
taataattataatgcataatgataagacagaaaccaccaataattgaatttattagcatttaatggcatgatgagatcgttattatgttactactatata |
312 |
Q |
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| T |
48707245 |
taataattataatgcataatgataagacagaaaccaccaataattgaatttattagcatttaatggcatgatgagatcgttattatgttactactatata |
48707344 |
T |
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| Q |
313 |
ggcagagcccaacccacccaacaccaattctagaacttttatttttcttgatggctgttaactgtacttgtacaactaaaatcccaaatcagaaatatgg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48707345 |
ggcagagcccaacccacccaacaccaattctagaacttttatttttcttgatggctgttaactgtacttgtacaactaaaatcccaaatcagaaatatgg |
48707444 |
T |
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| Q |
413 |
atcatttctcaagtatccaaacaaagaattgatgcttaaacgtaactatgtcccgctgaaaaa |
475 |
Q |
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| T |
48707445 |
atcatttctcaagtatccaaacaaagaattgatgcttaaacgtaactatgtcccgctgaaaaa |
48707507 |
T |
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