View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_23 (Length: 474)
Name: NF0084_2D_low_23
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 10 - 456
Target Start/End: Original strand, 36890802 - 36891248
Alignment:
| Q |
10 |
atattgttctataattggttatacatatgtgttatctgatgaaacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaac |
109 |
Q |
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| T |
36890802 |
atattgtgctataattggttatacatatgtgttatgtgatgaaacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaac |
36890901 |
T |
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| Q |
110 |
aaagaagaatcaactcctctcaaagtccttgccactagaccttcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgta |
209 |
Q |
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| T |
36890902 |
aaagaagaatcaactcctctcaaagtccttgccactagaccttcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgta |
36891001 |
T |
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| Q |
210 |
agtacatatacatgtgttggagaattatgtaacatttatattatgacatataaaaatgtactatatatgtgatttgagtattttaatttgtttgttgcca |
309 |
Q |
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| T |
36891002 |
agtacatatacatgtgttggagaattatgtaacatttatattatgacatataaaaatgtactatatatgtgatttgagtattttaatttgtttgttgcca |
36891101 |
T |
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| Q |
310 |
aattaaggcatactcgtggaaccactggatcatgaaaaagcaatgagatcaaatttgagaaagatggaggctggttcagattctaacaagatgaagttac |
409 |
Q |
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| T |
36891102 |
aattaaggcatactcgtggaaccactggatcatgaaaaaacaatgagatcaaatttgagaaagatggaggctggttcagattctaacaagatgaagttac |
36891201 |
T |
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| Q |
410 |
cagataactacaccactttatattatttcttctctatagggttgatg |
456 |
Q |
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| T |
36891202 |
cagataactataccactttatattatttcttctctatagggttgatg |
36891248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 52 - 432
Target Start/End: Original strand, 36877777 - 36878162
Alignment:
| Q |
52 |
aacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaatcaactcctctcaaagtccttgccactagacct |
151 |
Q |
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| T |
36877777 |
aacagatttggctgtgataatagtacatcaatatgattacctcagcacacatctgaacaaagaaggatcaactcctctcaaagtccttgcagctagacct |
36877876 |
T |
|
| Q |
152 |
tcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaag----------tacatatacatgtgttggagaattatgtaa |
241 |
Q |
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| T |
36877877 |
tcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagtactaattaatacatatatatgtgttagaaaattatgt-- |
36877974 |
T |
|
| Q |
242 |
catttatattatgacat-ataaaaatgtactatatatgtgatttgagtattttaatttgtttgttgccaaattaaggcatactcgtggaaccactggatc |
340 |
Q |
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| T |
36877975 |
-attgatattactatataattaaaatctac-atatatatgttttgag--tcttaatttgtttgttgacaaattaaggcatactcgtggaaccactggatc |
36878070 |
T |
|
| Q |
341 |
atgaaaaagcaatgagatcaaatttgagaaagatggaggctggttcagattctaacaagatgaagttaccagataactacaccactttatat |
432 |
Q |
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| T |
36878071 |
atgaaaaagcaatgaggtcaaatttgagaaagatggaggctggttcagattccaacaagatgaagttaccagataactataccactttatat |
36878162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 36897546 - 36897705
Alignment:
| Q |
54 |
cagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaatcaactcctctcaaagtccttgccactagaccttc |
153 |
Q |
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||||||| ||||||||| ||| | ||||||||| |||||| |||||||||| |||| |||| | ||| |||||||| | ||||||| | || ||||| |
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| T |
36897546 |
cagatttagctgtgataatagcaaattactatgctttccttagcacacatcagaacgaagaggtatccactcctctgtatctccttgctaataagccttc |
36897645 |
T |
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| Q |
154 |
agccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagta |
213 |
Q |
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| T |
36897646 |
agctttcaaaagttctagcagcctaccatggtataaacgaatcctatactacagtaagta |
36897705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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