View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_25 (Length: 447)
Name: NF0084_2D_low_25
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_25 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0225 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Original strand, 44894411 - 44894851
Alignment:
| Q |
12 |
acatcaaacatattattattatccccgccaaattttagtccaatctcctttcctatccccataacatcctcctgtgccactcgatgagtaccatgaagca |
111 |
Q |
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| T |
44894411 |
acatcaaacatattattattatctccgccaaattttagtccaatctcctttcctatccccgtaacatcctcctgtgccactcgatcagtaccatgaagca |
44894510 |
T |
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| Q |
112 |
ccaaccaattctcccagtcattattaacagatgactgagaaacactttgctgtgccactttgtcttttgagatagcttgaacctgagtgtcaccacacgg |
211 |
Q |
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| T |
44894511 |
ccaaccaattctcccagtcattattaacagatgactgagaaacactttgttgtgccactttgtcttttgagatagcttgaacctgagtgtcaccacacgg |
44894610 |
T |
|
| Q |
212 |
cctcatcct-tttttaacatttcttgttagagcacgtaaaacatcttcacgatctttcgtcggtagccgatcaatacgcctcatactttgcgtcgtatga |
310 |
Q |
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| T |
44894611 |
cctcatcctctttttaacatttcttgttagagcacgtaaaacatcttcacgatctttcgtcggtagccgagcaatacgcctcatactttgcgtcgtatga |
44894710 |
T |
|
| Q |
311 |
cgcagatagccactaccnnnnnnnnattaacacacggtccacttgtagaagaagaattaattgagacatg----gcggaaggcaaattaccttcaacaat |
406 |
Q |
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| T |
44894711 |
tgcagatagccactatcttttttttattaacatgcgatccacttgtagaagaagaattaattgagacatgtttcgcggaagacaaattaccttcaacaat |
44894810 |
T |
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| Q |
407 |
atcaagattttggctctttacccattccaaactccacggac |
447 |
Q |
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| T |
44894811 |
atcaagattttggctctttacccattccaaactccacggac |
44894851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 8252241 - 8252386
Alignment:
| Q |
12 |
acatcaaacatattattattatccccgccaaattttagtccaatctcctttcctatccccataacatcctcctgtgccactcgatgagtaccatgaagca |
111 |
Q |
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| T |
8252241 |
acatcaaacatattatttttatcccctgcaaattttatcccaatctccttccctatcccccgaacgtcctctgttgttacacaatcagtaccatgaagca |
8252340 |
T |
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| Q |
112 |
ccaaccaattctcccagtcattattaacagatgactgagaaacact |
157 |
Q |
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| T |
8252341 |
ccaaccagttctgccactcattattaactgacgactgagaagcact |
8252386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 19157264 - 19157349
Alignment:
| Q |
224 |
ttaacatttcttgttagagcacgtaaaacatcttcacgatctttcgtcggtagccgatcaatacgcctcatactttgcgtcgtatg |
309 |
Q |
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| T |
19157264 |
ttaacatttcttttcagagcacggagaacatcttcacgatcttttgccggaagtctagcaatacgcctcatgctttgcgccgtatg |
19157349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 24733992 - 24733944
Alignment:
| Q |
100 |
taccatgaagcaccaaccaattctcccagtcattattaacagatgactg |
148 |
Q |
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| T |
24733992 |
taccatgaagaaccaaccaattcatccaatcattattaacagatgactg |
24733944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 2777 - 2726
Alignment:
| Q |
100 |
taccatgaagcaccaaccaattctcccagtcattattaacagatgactgaga |
151 |
Q |
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| T |
2777 |
taccatgaagagccaaccaattcatccagtcattattaacagacgactgaga |
2726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 29549407 - 29549457
Alignment:
| Q |
102 |
ccatgaagcaccaaccaattctcccagtcattattaacagatgactgagaa |
152 |
Q |
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| T |
29549407 |
ccatgaagaaccaaccaattcgaccagtcattattaatagatgattgagaa |
29549457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 6921117 - 6921072
Alignment:
| Q |
100 |
taccatgaagcaccaaccaattctcccagtcattattaacagatga |
145 |
Q |
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| T |
6921117 |
taccatgaagtactaaccaattcgaccagtcattattaacagatga |
6921072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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