View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_26 (Length: 401)
Name: NF0084_2D_low_26
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 36893464 - 36893111
Alignment:
| Q |
18 |
gacgaaaatctttggcttgttttctagaagtgagaatagaaagaaacatgatgagtccggttacggagaagcagagaccaataagtgaagaaatggcaaa |
117 |
Q |
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| T |
36893464 |
gacgaaaatctttggcttgttttctagaagtgagaatagaaagaaacatgatgagtccggttacggagaagcagagaccgataagtgaagaaatggcaaa |
36893365 |
T |
|
| Q |
118 |
gacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaagg |
217 |
Q |
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| T |
36893364 |
gacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaagg |
36893265 |
T |
|
| Q |
218 |
gcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893264 |
gcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgttt |
36893165 |
T |
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| Q |
318 |
tgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgt |
371 |
Q |
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| T |
36893164 |
tgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgt |
36893111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 36883461 - 36883110
Alignment:
| Q |
18 |
gacgaaaatctttggcttgttttctagaagtgagaatagaaagaaacatgatgagtccggttacggagaagcagagaccaataagtgaagaaatggcaaa |
117 |
Q |
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| T |
36883461 |
gacgaaaatctttggcttgtttacgagaagtgagaattgaaaggaacatgatgagtccggtaacagagaagcaaagaccgataagtgaagaaatggcaaa |
36883362 |
T |
|
| Q |
118 |
gacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaagg |
217 |
Q |
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| | || ||||||||||||||||||||||| || || |||| ||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
36883361 |
ggcgtcaaatgcaggcttgccttctaatactggactgccttcatcggttgtgccgccaggtacttggcttgctgtggcaaaggaaacaccggctacaagg |
36883262 |
T |
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| Q |
218 |
gcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgttt |
317 |
Q |
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| T |
36883261 |
ccagatacgacggagcaggattctgacgtgtcttttagccaactgctgctctcttgtataagattttcgtgtgttgtcttgaaaatttcacttgatgttt |
36883162 |
T |
|
| Q |
318 |
tgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgat |
369 |
Q |
| |
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|||| || ||||| |||| || |||||||||||| |||||||||||||| |
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| T |
36883161 |
tgcccttgttgttgcttctaaagtagaagtgttgtggtacaaggcttttgat |
36883110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 36903264 - 36902918
Alignment:
| Q |
20 |
cgaaaatctttggcttgttttctagaagtgagaatagaaagaaacatgatgagtccggttacggagaagcagagaccaataagtgaagaaatggcaaaga |
119 |
Q |
| |
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||||||||||| ||| ||||| ||| ||||||| | |||| |||||||||||| |||| | ||||| || || ||| |||| |||| || | |||| |
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| T |
36903264 |
cgaaaatcttttgctcgtttttgagatgtgagaacaaaaaggaacatgatgagtgcggtgaaagagaaacaaaggccactaagcgaagcaaagaggaaga |
36903165 |
T |
|
| Q |
120 |
catcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaagggc |
219 |
Q |
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||| ||||||||| |||||||||||||| |||||||| | ||||||| ||||||||||| || |||| ||||| |||||| ||||||| ||||| || |
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| T |
36903164 |
cattgaatgcaggattgccttctaatactggtctaccct---cagttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaagcgc |
36903068 |
T |
|
| Q |
220 |
agatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgttttg |
319 |
Q |
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| |||||| |||||||| || | ||||| |||||||||||| | ||||||||||||||||||| |||| || |||||| || | | | ||||||| |
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| T |
36903067 |
ggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatattttcagctgttttg |
36902968 |
T |
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| Q |
320 |
ccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgat |
369 |
Q |
| |
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|| || ||||| || | ||| ||||||| |||||||||||||||||| |
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| T |
36902967 |
cctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgat |
36902918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 401
Target Start/End: Original strand, 36893074 - 36893107
Alignment:
| Q |
368 |
atgtgattattttttatttatgttaaattggagc |
401 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36893074 |
atgtgattattttttatttatgttaaattggagc |
36893107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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