View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0084_2D_low_29 (Length: 397)

Name: NF0084_2D_low_29
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0084_2D_low_29
NF0084_2D_low_29
[»] chr5 (4 HSPs)
chr5 (10-391)||(17739628-17740009)
chr5 (38-94)||(40483739-40483795)
chr5 (37-96)||(2243276-2243335)
chr5 (57-98)||(7215448-7215489)
[»] chr8 (2 HSPs)
chr8 (12-101)||(32166735-32166825)
chr8 (35-96)||(29969153-29969214)
[»] chr2 (2 HSPs)
chr2 (37-112)||(16576289-16576363)
chr2 (38-102)||(16863506-16863570)
[»] chr1 (4 HSPs)
chr1 (37-88)||(41148596-41148647)
chr1 (37-102)||(38839621-38839686)
chr1 (37-102)||(7104315-7104380)
chr1 (51-111)||(68139-68198)
[»] chr7 (2 HSPs)
chr7 (39-95)||(23944133-23944189)
chr7 (36-101)||(757901-757966)
[»] chr4 (3 HSPs)
chr4 (44-112)||(25062360-25062427)
chr4 (35-102)||(22050902-22050969)
chr4 (51-112)||(20512801-20512861)


Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 17740009 - 17739628
Alignment:
Q  10 ccttgatgaattgagtgaaattcatct-taatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatggaagaa 108  Q
    ||||||||||||||||||||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17740009 ccttgatgaattgagtgaaattcatccctaataataagtaggattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatg-aagaa 17739911  T
Q  109 gtttttgatcgcaatgtaaatataactatgttctcaagtgcgtaataacagcaagtgaatgagagttaatgaagtttttccacaaaaagacctacatgga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17739910 gtttttgatcgcaatgtaaatataactatgttctcaagtgcgtaataacagcaagtgaatgagagttaatgaagtttttccacaaaaagacctacatgga 17739811  T
Q  209 cagggaccaaacatgctgccatgtgataatgtggtcaataagctatttaattgttagaaacaaaaggcagataagatattaatgctgcaaaaggattaga 308  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17739810 cagggaccaaacatgctgccatgtgattttgtggtcaataagctatttaattgttagaaacaaaaggcagataagatattaatgctgcaaaaggattaga 17739711  T
Q  309 tatatgcataatctaatgtcatgattcattgctttgaacaacctttgtatgtggtgcaaattaacagattaatggtccattca 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17739710 tatatgcataatctaatgtcatgattcattgctttgaacaacctttgtatgtggtgcaaattatcagattaatggtccattca 17739628  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 40483795 - 40483739
Alignment:
Q  38 aatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatga 94  Q
    |||||||||||  |||||||| ||||||||| |||||||| |||||||||| |||||    
T  40483795 aatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaatga 40483739  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 2243276 - 2243335
Alignment:
Q  37 taatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaag 96  Q
    |||||| ||||| ||||||||||| |||||||| ||||| | |||||||||| |||||||    
T  2243276 taatgacaagtaaaattcgattctagaacgaagaagatggagatcacatgttgaatgaag 2243335  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 7215448 - 7215489
Alignment:
Q  57 ttctggaacgaaggagatgaaaatcacatgttaaatgaagaa 98  Q
    |||||||||||| |||||||| |||||||||| |||||||||    
T  7215448 ttctggaacgaaagagatgaagatcacatgttgaatgaagaa 7215489  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 32166735 - 32166825
Alignment:
Q  12 ttgatgaattgagtgaaattcatct-taatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagat 101  Q
    ||||||||||| ||| |||| | || |||||| |||||  |||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  32166735 ttgatgaattgggtgtaatttacctctaatgacaagtacgattcgattttggaacgaaagagatgtaaatcacatgttaaatgaagaagat 32166825  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 29969214 - 29969153
Alignment:
Q  35 cttaatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaag 96  Q
    |||||||| ||||||||||||||| ||||||||| |||||||| |||||||||| |||||||    
T  29969214 cttaatgacaagtagaattcgattatggaacgaaagagatgaatatcacatgttgaatgaag 29969153  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 16576363 - 16576289
Alignment:
Q  37 taatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatggaagaagttt 112  Q
    ||||||||||||  |||||||||||||||||| |||| | | |||||||||| ||||||| |||| ||||||||||    
T  16576363 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagat-gaagaagttt 16576289  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 16863570 - 16863506
Alignment:
Q  38 aatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatg 102  Q
    ||||| |||||| ||||||||||  ||||||||||||| | ||||||| || ||| |||||||||    
T  16863570 aatgacaagtaggattcgattctataacgaaggagatgtagatcacatattgaataaagaagatg 16863506  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 41148596 - 41148647
Alignment:
Q  37 taatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgtt 88  Q
    |||||| ||||||||||||||||| |||||||||||||| | ||||||||||    
T  41148596 taatgaaaagtagaattcgattctagaacgaaggagatggatatcacatgtt 41148647  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 38839621 - 38839686
Alignment:
Q  37 taatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatg 102  Q
    |||||| |||||| |||||||| |||||||||| |||| || |||||||||  |||||||||||||    
T  38839621 taatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatg 38839686  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 7104380 - 7104315
Alignment:
Q  37 taatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatg 102  Q
    |||||| |||||  ||||||||||| |||||| |||||||| || ||||||| ||||||| |||||    
T  7104380 taatgacaagtatgattcgattctgaaacgaaagagatgaatattacatgttgaatgaaggagatg 7104315  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 68198 - 68139
Alignment:
Q  51 attcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatggaagaagtt 111  Q
    |||||||| |||||||||  ||||| | |||||||||||||||||| |||| |||||||||    
T  68198 attcgattttggaacgaaaaagatggagatcacatgttaaatgaaggagat-gaagaagtt 68139  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 23944189 - 23944133
Alignment:
Q  39 atgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaa 95  Q
    ||||||||||  ||||||||||||||  ||||||||| |||||||||||| ||||||    
T  23944189 atgataagtatgattcgattctggaataaaggagatggaaatcacatgttgaatgaa 23944133  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 757901 - 757966
Alignment:
Q  36 ttaatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagat 101  Q
    ||||| |||||||| |||| ||| | ||| |||||||||||| |||||||||| ||||||| ||||    
T  757901 ttaataataagtaggattcaattatagaatgaaggagatgaagatcacatgttgaatgaaggagat 757966  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 25062427 - 25062360
Alignment:
Q  44 aagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatggaagaagttt 112  Q
    |||||| ||| |||| |||||| ||||||||||| |||||||||| ||||||| |||| ||||||||||    
T  25062427 aagtaggatttgattatggaacaaaggagatgaagatcacatgtttaatgaagcagat-gaagaagttt 25062360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 22050969 - 22050902
Alignment:
Q  35 cttaatgataagtagaattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatg 102  Q
    ||||||||||| ||  ||||||||||| || ||| |||||||| |||||||||| ||||||| |||||    
T  22050969 cttaatgataaatatgattcgattctgaaaggaatgagatgaagatcacatgttgaatgaaggagatg 22050902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 20512801 - 20512861
Alignment:
Q  51 attcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatggaagaagttt 112  Q
    |||||||| || ||||||||| ||| | || |||||||||||||||||||| ||||||||||    
T  20512801 attcgattatgaaacgaaggatatggagattacatgttaaatgaagaagat-gaagaagttt 20512861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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