View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0084_2D_low_3 (Length: 1424)
Name: NF0084_2D_low_3
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 1160; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1160; E-Value: 0
Query Start/End: Original strand, 1 - 1211
Target Start/End: Original strand, 32024943 - 32026156
Alignment:
| Q |
1 |
ttgggttgttttctatttaatttattgatttgggtttatgtttgatgttgatttcctttgtctgtgctaactagttcggtaattagtgattcagtggtaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32024943 |
ttgggttgttttctatttaatttgttgatttgggtttatgtttgatgttgatttcctttgtctgtgctaactagttcggtaattagtgattcagtggtaa |
32025042 |
T |
|
| Q |
101 |
ttactttgattgttcttgtggtaacaagcactgagggaattagttagtaattagtagagtagagattctaattaatggaaggaagtagctagatcccact |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32025043 |
ttactttgattgttctcgtggtaacaagcactgagggaattagttagtaattagtagagtagagattctaattaatggaaggaagtagctagatcccact |
32025142 |
T |
|
| Q |
201 |
aactaaatagagctactcaactacttcgaattccttctcattctatagaagaagtccaataagcaagctaatcattagaagagtttactaaacctagcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32025143 |
aactaaatagagctactcaactacttcgaattccttctcattctatagaagaagtccaataagcaagctaatcattagaagagtttactaaacctagcta |
32025242 |
T |
|
| Q |
301 |
tttagtttgatcggctcacttgatagaaattattcagttactcggagttagtgatagattgggacgagacactgggtctgcttgtttacacttttgttat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32025243 |
tttagtttgatcggctcacttgatagaaattattcagttactcggagttagtgatagattgggacgagacactgggtctgcttgtttacacttttgttat |
32025342 |
T |
|
| Q |
401 |
tcaaagatactaagttaattattgaaccgcagagaccgtgagttggagtcaacgtcaatttcaacgccctcaaagcaagccgaaaaggagcaaccagctc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32025343 |
tcaaagatactaagttaattattgaaccgcagagaccgtgagttggagtcaacgtcaatttcaacgccctcaaagcaagccgaaaaggagcaaccagctc |
32025442 |
T |
|
| Q |
501 |
tggaggctccgaaggcagaaaacaaagaggaggagggggattgcgggttctgcctgttcatcaaaggagacagttgcagagacaccttggttgaatggga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32025443 |
cggaggctccgaaggcagaaaacaaagaggaggagggggattgcgggttctgcctgttcattaaaggagacagttgcagagacaccttggttgaatggga |
32025542 |
T |
|
| Q |
601 |
gaattgtgtgaaagaggcgaaggagaagaaagaagacctcgctgaaaagtgctctggggtgactactcgtttgttgcagtgtatggattccaattccgat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32025543 |
gaattgtgtgaaagaggcgaaggagaagaaagaagacctcgctgaaaagtgctctggggtgactactcgtttgttgcagtgtatggattccaattccgat |
32025642 |
T |
|
| Q |
701 |
---tgcaaacccatcatcaagaccgagaagcgcgtcgaagagcaagccccttctcgttctaatcaaatgtgatttcgaatttccattcctattttaattt |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32025643 |
tactgcaaacccatcatcaagaccgagaagcgcgtcgaagagcaagccccttctcattctaatcaaatgtgatttcgaatttccattcctattttaattt |
32025742 |
T |
|
| Q |
798 |
tttatttcattggtattatacttcacttctagtattactatgctgtagcatccacttatttcaaatgataacactagtttaaaatttgttactcacatga |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32025743 |
tttatttcattggtattatacttcacttctagtattactatgctgtagcatccacttatttcaaatgataacactagtttaaaatttgttactcacatga |
32025842 |
T |
|
| Q |
898 |
taagactgtgtgcaagagaaagagagtggttctctttttctggtcataataagtggaattactaataggtattttatctcaagtttcaatcaaattttgt |
997 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32025843 |
taagactgtgtgccagagaaagagagtggttctctttttctggtcataataagtggaattactaataggtattttatctcaagtttcaatcaaattttgt |
32025942 |
T |
|
| Q |
998 |
ttttaattttatgatatggttataagtggctcttttaccgtcttgttgatgatttgtgccctaggtggctaagcctatttgcgattgcacgagaatgatg |
1097 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32025943 |
ttttaattttatgatatgattataagtggctcttttaccgtcttgttgatgatttgtgccctaggtggctaagcctatttacgattgcacgagaatgatg |
32026042 |
T |
|
| Q |
1098 |
cttcattgagaaatacttagggacaaacaaaaatgtagaaggttttggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgtt |
1197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32026043 |
cttcattgagaaatacttagggacaaacaaaaatgtaaaaggttttggcacactgacacaaatgctttttcttttaaagataaattggtttaatgatgtt |
32026142 |
T |
|
| Q |
1198 |
gaatgacgtgactg |
1211 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32026143 |
gaatgacgtgactg |
32026156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 1277 - 1424
Target Start/End: Original strand, 32026220 - 32026367
Alignment:
| Q |
1277 |
atctatgtaagactttctctgcttcatcatgtgtatggcacttaatttgttgatatttgagaatctctaatggggaaaagagatatatgtgaatctcttt |
1376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32026220 |
atctatgtaagactttctctgcttcatcatgtgtatggcacttaatttgttgatatttgagaatctctaatggggaaaagagatatatgtgaatctcttt |
32026319 |
T |
|
| Q |
1377 |
tggatttaagtgtatgagtaaatgaaattttgatgatctgtgtgtttg |
1424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32026320 |
tggatttaagtgtatgagtaaatgaaattttgatgatctgtgtgtttg |
32026367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 501 - 701
Target Start/End: Original strand, 32026777 - 32026980
Alignment:
| Q |
501 |
tggaggctccgaaggcagaaaacaaagaggaggagg---gggattgcgggttctgcctgttcatcaaaggagacagttgcagagacaccttggttgaatg |
597 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| | | || || ||||||||| ||||||| ||||||| | |||||||||||||||| || || || |
|
|
| T |
32026777 |
tggaggctccgaaagcagaaaacggagaggaggaagaaggtgagtgtgggttctgcgtgttcatgaaaggaggcggttgcagagacaccttcgtcgattg |
32026876 |
T |
|
| Q |
598 |
ggagaattgtgtgaaagaggcgaaggagaagaaagaagacctcgctgaaaagtgctctggggtgactactcgtttgttgcagtgtatggattccaattcc |
697 |
Q |
| |
|
|||||| || || | ||||| || |||| ||||| ||| ||| ||||||||||||| ||| ||| || |||| |||||||||||||| ||||| |
|
|
| T |
32026877 |
ggagaactgcatggatgaggcagagaagaacaaagaggacgtcgttgaaaagtgctctcaggtcactgatcttttgaaacagtgtatggattctcattcc |
32026976 |
T |
|
| Q |
698 |
gatt |
701 |
Q |
| |
|
|||| |
|
|
| T |
32026977 |
gatt |
32026980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1113 - 1208
Target Start/End: Complemental strand, 10383592 - 10383497
Alignment:
| Q |
1113 |
cttagggacaaacaaaaatgtagaaggttttggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgttgaatgacgtga |
1208 |
Q |
| |
|
|||||| |||||| |||||| | || |||| |||||||| |||||| | ||||| |||| ||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
10383592 |
cttaggaacaaaccaaaatgcaaaaagtttgggcacactcacacaagtacttttgtttttaaagataaattgatttaatgatattgaatgacgtga |
10383497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 945 - 1079
Target Start/End: Original strand, 32024507 - 32024648
Alignment:
| Q |
945 |
aataagtggaattactaataggtattttatctcaagtttcaatcaaattttgtttttaattttatgatatggt-------tataagtggctcttttaccg |
1037 |
Q |
| |
|
|||||||||||||| | |||||| | |||||||| ||||||| || |||||||||| | ||| ||||||||| || |||| | |||||||| | |
|
|
| T |
32024507 |
aataagtggaattattgataggtgatctatctcaattttcaataaagttttgttttttaatttttgatatggttgttatgtagaagtagttcttttactg |
32024606 |
T |
|
| Q |
1038 |
tcttgttgatgatttgtgccctaggtggctaagcctatttgc |
1079 |
Q |
| |
|
||| ||| |||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
32024607 |
tctagttaatgatttgtgccttaggtagctaagcttatttgc |
32024648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1361 - 1424
Target Start/End: Original strand, 32024872 - 32024935
Alignment:
| Q |
1361 |
atatgtgaatctcttttggatttaagtgtatgagtaaatgaaattttgatgatctgtgtgtttg |
1424 |
Q |
| |
|
|||||||| |||||||||| || || ||| ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
32024872 |
atatgtgagtctcttttgggttgaactgtgtgattaaatggaattttgatgatctgtgtgtttg |
32024935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1113 - 1203
Target Start/End: Original strand, 32108199 - 32108290
Alignment:
| Q |
1113 |
cttagggacaaacaaaaatgtagaaggttttggcacactgacacaaatgctt-tttcttttgaagataaattggtttaatgatgttgaatga |
1203 |
Q |
| |
|
|||||||||| || ||||||| || |||| | |||||| |||||||||||| ||| ||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
32108199 |
cttagggacagacccaaatgtaaaaagtttggacacactcacacaaatgcttatttgtttaaaagataagttggtttaataatgttgaatga |
32108290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1144 - 1210
Target Start/End: Original strand, 48480181 - 48480246
Alignment:
| Q |
1144 |
ggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgttgaatgacgtgact |
1210 |
Q |
| |
|
|||||||| ||| |||||||| || || | ||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
48480181 |
ggcacactcacataaatgcttatt-ttgtaaagataaattggtttaatgatcttgaatgatgtgact |
48480246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 32026698 - 32026735
Alignment:
| Q |
369 |
acactgggtctgcttgtttacacttttgttattcaaag |
406 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
32026698 |
acactgggtctgcttgttgacacttctgttattcaaag |
32026735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 6e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 1114 - 1203
Target Start/End: Complemental strand, 12129317 - 12129228
Alignment:
| Q |
1114 |
ttagggacaaacaaaaatgtagaaggttttggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgttgaatga |
1203 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||||| ||| | || | ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12129317 |
ttagggacaaacacaaatgtaaaaggtttgagcacactcacagagataccttttcttttaaagataaattggtttaatgatgttgaatga |
12129228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1111 - 1196
Target Start/End: Complemental strand, 1416349 - 1416265
Alignment:
| Q |
1111 |
tacttagggacaaacaaaaatgtagaaggttttggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgt |
1196 |
Q |
| |
|
|||||||||||||||| || |||| ||||||| ||||||| |||||||||||||||||||| || ||||||||| |||||||||| |
|
|
| T |
1416349 |
tacttagggacaaacacaa-tgtaaaaggtttgagcacactcacacaaatgctttttcttttaaaaataaattggcttaatgatgt |
1416265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1119 - 1210
Target Start/End: Complemental strand, 36206588 - 36206496
Alignment:
| Q |
1119 |
gacaaacaaaaatgtagaaggttttgg-cacactgacacaaatgctttttcttttgaagataaattggtttaatgatgttgaatgacgtgact |
1210 |
Q |
| |
|
|||||||| ||||||| || | ||||| |||||| |||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
36206588 |
gacaaacacaaatgtaaaaaggtttggacacactcacacaaatatattttcttttaaagataaattggtttaaagatgttgaatgatgtgact |
36206496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1113 - 1208
Target Start/End: Original strand, 42560414 - 42560509
Alignment:
| Q |
1113 |
cttagggacaaacaaaaatgtagaaggttttggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgttgaatgacgtga |
1208 |
Q |
| |
|
||||||||||||| | ||| | || |||| |||||||| |||||||||||| || ||| ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
42560414 |
cttagggacaaacccagatgcaaaaagtttgggcacactcacacaaatgcttattttttaaaagataaattggtttaatgattttgaatgatgtga |
42560509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 1144 - 1210
Target Start/End: Original strand, 39112710 - 39112776
Alignment:
| Q |
1144 |
ggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgttgaatgacgtgact |
1210 |
Q |
| |
|
|||||||| |||||| |||||||| |||| ||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
39112710 |
ggcacactcacacaattgcttttttttttaaaggtaaattggtttaatgatgttgaatgatgtgact |
39112776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1139 - 1202
Target Start/End: Complemental strand, 25724505 - 25724442
Alignment:
| Q |
1139 |
gttttggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgttgaatg |
1202 |
Q |
| |
|
||||||||||||| |||||||||||| || |||| ||| |||||||||||||||||||| |||| |
|
|
| T |
25724505 |
gttttggcacactcacacaaatgcttatttttttaaaggtaaattggtttaatgatgttaaatg |
25724442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 1104 - 1203
Target Start/End: Original strand, 25899414 - 25899515
Alignment:
| Q |
1104 |
tgagaaatacttag----ggacaaacaaaaatgtagaaggttttggcacactg-acacaaatgctttttcttttgaagataaattggtttaatgatgttg |
1198 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||| |||||| | ||||||||||||||| || ||||||||||||||||||||| ||| |
|
|
| T |
25899414 |
tgagaaatacttagttaaggacaaacacaaatgtaaaaggtttgggcacatttcacacaaatgctttttttt---aagataaattggtttaatgatattg |
25899510 |
T |
|
| Q |
1199 |
aatga |
1203 |
Q |
| |
|
||||| |
|
|
| T |
25899511 |
aatga |
25899515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1115 - 1210
Target Start/End: Complemental strand, 12837273 - 12837178
Alignment:
| Q |
1115 |
tagggacaaacaaaaatgtagaaggttttggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgttgaatgacgtgact |
1210 |
Q |
| |
|
||||||||||| ||||||| || | || | |||||| |||||||||||| || ||| |||| || |||||||||| |||||||||||||||||| |
|
|
| T |
12837273 |
tagggacaaacccaaatgtaaaaagcttagacacactcacacaaatgcttgttttttaaaagaaaatttggtttaataatgttgaatgacgtgact |
12837178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1108 - 1196
Target Start/End: Original strand, 22580205 - 22580292
Alignment:
| Q |
1108 |
aaatacttagggacaaacaaaaatgtagaaggttttggcacactgacacaaatgctttttcttttgaagataaattggtttaatgatgt |
1196 |
Q |
| |
|
||||||||| | |||||| ||||||| ||||||| | |||||| ||| ||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
22580205 |
aaatacttacgaacaaacctaaatgtaaaaggtttagacacactcacataaatgctttat-tttaaaagataaattggtttaatgatgt |
22580292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1111 - 1167
Target Start/End: Original strand, 34409450 - 34409506
Alignment:
| Q |
1111 |
tacttagggacaaacaaaaatgtagaaggttttggcacactgacacaaatgcttttt |
1167 |
Q |
| |
|
||||||||||||||| |||||||||||||| | |||||| ||||||||||||||| |
|
|
| T |
34409450 |
tacttagggacaaacgttaatgtagaaggtttggacacactcacacaaatgcttttt |
34409506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1174 - 1208
Target Start/End: Complemental strand, 25327394 - 25327360
Alignment:
| Q |
1174 |
aagataaattggtttaatgatgttgaatgacgtga |
1208 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
25327394 |
aagataaattggtttaatgatgttgaatgatgtga |
25327360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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