View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_31 (Length: 363)
Name: NF0084_2D_low_31
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 23211189 - 23210832
Alignment:
| Q |
1 |
tacttgtagggttaagttgaagtgtccaactcatttatatggttattcttgacccaatgtggatgtttctcgagctcccctgatgatcctacagtgatat |
100 |
Q |
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| T |
23211189 |
tacttgtagggttaagttgaagtgtccaactcatttatatggttattcttgacccaatgtggatgtttctcgagctcccctgatgatcctacagtgatat |
23211090 |
T |
|
| Q |
101 |
catagtcattggttcgccgaatgactcattatgccggaagtcttcctaacaataatggtagggcaatgtgtcatgtttagtgcggccaattgaggaggag |
200 |
Q |
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| T |
23211089 |
catagtcattggttcgccgaatgactcattatgccggaagtcttcctaacaataatggtagggcaatgtgtcatgtttagtgcggccaattgaggaggag |
23210990 |
T |
|
| Q |
201 |
catgtacacatatgaatggatggatgagagattattatgtaacaagtgtgcgcagaagtctcatattagatgaaaaaatggatgttgaacactatataag |
300 |
Q |
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| T |
23210989 |
catgtacacatatgaatggatggatgagaggttattatgtaacaagtgtacgcagaagtctcatattagatgaaaaaatggatgttgaacactatataag |
23210890 |
T |
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| Q |
301 |
ttataagactcataactcaatgtcttaagatttaggttaagatgtgatgtccatctca |
358 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23210889 |
ttataagacccgtaactcaatgtcttaagatttaggttaagatgtgatgtccaactca |
23210832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 38259380 - 38259343
Alignment:
| Q |
254 |
agaagtctcatattagatgaaaaaatggatgttgaaca |
291 |
Q |
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| T |
38259380 |
agaagtctcatattagatgaaaaaatagatgttgaaca |
38259343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 41039019 - 41038977
Alignment:
| Q |
23 |
tgtccaactcatttatatggttattcttgacccaatgtggatg |
65 |
Q |
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|||| |||||||||| ||||||||||||||||||||| ||||| |
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| T |
41039019 |
tgtctaactcatttacatggttattcttgacccaatgcggatg |
41038977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 47157597 - 47157690
Alignment:
| Q |
10 |
ggttaagttgaagtgtccaactcatttatatggttattcttgacccaatgtggatgtttc-tcgagctcccctgatgatcctacagtgatatca |
102 |
Q |
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| T |
47157597 |
ggttaagatgcagtatccaactcatttgtgtgattgttcttgacccaatttggatgattcatctggctcccctcatgatccaacagtggtatca |
47157690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 31503547 - 31503515
Alignment:
| Q |
267 |
tagatgaaaaaatggatgttgaacactatataa |
299 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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|
| T |
31503547 |
tagatgagaaaatggatgttgaacactatataa |
31503515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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