View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0084_2D_low_38 (Length: 331)

Name: NF0084_2D_low_38
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0084_2D_low_38
NF0084_2D_low_38
[»] chr5 (8 HSPs)
chr5 (19-309)||(17736688-17736969)
chr5 (184-284)||(2243275-2243375)
chr5 (176-283)||(7215257-7215363)
chr5 (209-286)||(17739907-17739984)
chr5 (184-260)||(22780158-22780234)
chr5 (210-265)||(40483892-40483947)
chr5 (186-286)||(22780301-22780401)
chr5 (206-286)||(39808189-39808269)
[»] chr2 (7 HSPs)
chr2 (184-282)||(16863472-16863570)
chr2 (176-287)||(16576256-16576367)
chr2 (185-287)||(28282667-28282769)
chr2 (205-282)||(17606589-17606666)
chr2 (184-228)||(34176659-34176703)
chr2 (47-137)||(16576280-16576370)
chr2 (176-276)||(28282832-28282932)
[»] chr7 (3 HSPs)
chr7 (181-283)||(32138846-32138948)
chr7 (188-286)||(22593529-22593624)
chr7 (187-287)||(23944095-23944195)
[»] chr1 (9 HSPs)
chr1 (189-285)||(38839619-38839715)
chr1 (210-284)||(49897912-49897986)
chr1 (176-301)||(24874606-24874734)
chr1 (176-244)||(46080979-46081047)
chr1 (181-269)||(52432674-52432762)
chr1 (176-286)||(24873773-24873884)
chr1 (184-269)||(68113-68198)
chr1 (211-284)||(3232171-3232244)
chr1 (230-286)||(41148593-41148649)
[»] chr4 (4 HSPs)
chr4 (176-281)||(25062498-25062603)
chr4 (189-283)||(46431110-46431204)
chr4 (206-310)||(25062357-25062463)
chr4 (184-257)||(15131561-15131634)
[»] chr8 (4 HSPs)
chr8 (179-305)||(13149017-13149144)
chr8 (184-287)||(37010301-37010404)
chr8 (184-276)||(7590282-7590374)
chr8 (181-270)||(32166608-32166697)
[»] chr3 (3 HSPs)
chr3 (184-284)||(39341215-39341315)
chr3 (206-282)||(46303408-46303483)
chr3 (176-220)||(54437645-54437689)
[»] chr6 (2 HSPs)
chr6 (176-283)||(32342608-32342715)
chr6 (184-301)||(32047190-32047309)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 17736969 - 17736688
Alignment:
Q  19 cttacaatctattatcatttttatctttaagaatatcaaatttctttaccttcttccttcaacatatggtttccttctcattcgttctacaatagagtca 118  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17736969 cttacaatcgattaccatttttatctt-aagaatatcaaatttctttaccttcttccttcaacatatggtttccttctcattcgttctacaatagaatca 17736871  T
Q  119 tacttgtcattagaggtaatatagacctcactgataggannnnnnnnctaaaaagtaacaaccaattaccattttcatctcaattatatcaaacttcttc 218  Q
    ||||||||||||||||||||||||||||||||||||| |                | ||||||||||||||||||||||||||| |||| ||||||||||    
T  17736870 tacttgtcattagaggtaatatagacctcactgatagaatttttttc--------ttacaaccaattaccattttcatctcaataatattaaacttcttc 17736779  T
Q  219 atcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattaggggaattatcctcaatttatcgagg 309  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  17736778 atcttcttcactcaacatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattaggggaattatccaaaatttatcgagg 17736688  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 2243375 - 2243275
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcatta 283  Q
    ||||||||||||||||||  | ||||||||||||||| | ||||| |||| |||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  2243375 ttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaattttacttgtcatta 2243276  T
Q  284 g 284  Q
    |    
T  2243275 g 2243275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 7215363 - 7215257
Alignment:
Q  176 acaaccaattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtact 275  Q
    |||| ||| |||||||||||||||||  | ||||||||||||  ||||||||| | ||||||||||||| ||||| ||| ||||| ||| ||||| || |    
T  7215363 acaatcaactaccattttcatctcaagaacatcaaacttcttt-tcttcttcattgaatatgtgatctccatctttttcattctaaaattgaatcatatt 7215265  T
Q  276 tgtcatta 283  Q
    | ||||||    
T  7215264 tatcatta 7215257  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 17739907 - 17739984
Alignment:
Q  209 aaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattaggg 286  Q
    |||||||||||||||||||| | || ||||||| |  |||| |||||||| ||||||||||| ||||| | |||||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatcctacttattattaggg 17739984  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 22780234 - 22780158
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttcta 260  Q
    |||||||||| || ||||| | ||||||||| ||||||| | ||| |||| ||||||||||||| || |||||||||    
T  22780234 ttaccatttttatttcaataacatcaaactttttcatctacgtcattcaacatgtgatctctatgtttttcgttcta 22780158  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 40483892 - 40483947
Alignment:
Q  210 aacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatc 265  Q
    ||||||||||||||||| |||||| |||||||||| ||||  ||||||||| ||||    
T  40483892 aacttcttcatcttctttactcaacatgtgatctccatctcattcgttctataatc 40483947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 22780401 - 22780301
Alignment:
Q  186 accattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattagg 285  Q
    ||||||||||||||||  | |  |||||||||||| | ||||| |||| |||||||||  |||   |||||| ||||||| |||| || |||||||||||    
T  22780401 accattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatccctttcgttttagaatcaaatcatagttgtcattagg 22780302  T
Q  286 g 286  Q
    |    
T  22780301 g 22780301  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 39808269 - 39808189
Alignment:
Q  206 atcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattaggg 286  Q
    ||||||||| ||||||| ||||| | || || |||||| | |||  ||| |||||||||||||||  ||||||||||||||    
T  39808269 atcaaactttttcatctccttcatttaacatatgatctatgtctctttcattctagaatcgaatcacacttgtcattaggg 39808189  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 16863472 - 16863570
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcatt 282  Q
    ||||||||||||||||||  | |||||| |||||||||||||| | ||||||||||||||  |||| ||||||| |||||||||||| |||||||||||    
T  16863472 ttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttcgttatagaatcgaatcctacttgtcatt 16863570  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 16576256 - 16576367
Alignment:
Q  176 acaaccaattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtact 275  Q
    |||| |||||||||||||| ||||||  | ||||||||||||||||| ||||| |||| ||||||||||  |||  ||||||| ||||||||||| ||||    
T  16576256 acaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatact 16576355  T
Q  276 tgtcattagggg 287  Q
    | ||||||||||    
T  16576356 tatcattagggg 16576367  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 28282667 - 28282769
Alignment:
Q  185 taccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattag 284  Q
    ||||||||||||||| || | |||||||||||| |||| ||||| ||||||||||||||| ||||  ||||||| | |||| |||  ||||||| |||||    
T  28282667 taccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattag 28282766  T
Q  285 ggg 287  Q
    |||    
T  28282767 ggg 28282769  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 17606666 - 17606589
Alignment:
Q  205 tatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcatt 282  Q
    |||||||||| ||||||| ||||| |||| ||||||| || ||||  ||||||| |||||| |||| |||||||||||    
T  17606666 tatcaaacttgttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctacttgtcatt 17606589  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 34176659 - 34176703
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttca 228  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||    
T  34176659 ttaccattttcatcttaagaatatcaaacttcttcatcttcttca 34176703  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 16576280 - 16576370
Alignment:
Q  47 aagaatatcaaatttctttaccttcttccttcaacatatggtttccttctcattcgttctacaatagagtcatacttgtcattagaggtaa 137  Q
    ||||| |||||| ||||| | || |||| |||||||| || | |||||||||||||||| | ||| || |||||||| ||||||| |||||    
T  16576280 aagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaa 16576370  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 276
Target Start/End: Original strand, 28282832 - 28282932
Alignment:
Q  176 acaaccaattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtact 275  Q
    |||| |||||| |||||||||||| || ||||||||||| ||||| | |||| ||||| |||| ||||  || ||||||  || || |||||||| ||||    
T  28282832 acaatcaattatcattttcatctccataatatcaaactttttcatttgcttcgctcaacatgtaatcttcattttcttcaatccagtatcgaatcatact 28282931  T
Q  276 t 276  Q
    |    
T  28282932 t 28282932  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 32138948 - 32138846
Alignment:
Q  181 caattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtca 280  Q
    |||||||||||||||||| ||  | |||||| |||||||||| ||||  |||| |||| ||||| |||||||||||||||||| |||||| |||| ||||    
T  32138948 caattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatcttcttcgttctagaagcgaatcatactcgtca 32138849  T
Q  281 tta 283  Q
    |||    
T  32138848 tta 32138846  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 22593624 - 22593529
Alignment:
Q  188 cattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattaggg 286  Q
    ||||||||||||||  | ||||||||||   ||||  |||| |||| ||||||| ||||||| |||||||||| |||||||||||  ||||||||||||    
T  22593624 cattttcatctcaagaacatcaaacttc---atctatttcattcaacatgtgatatctatctccttcgttctaaaatcgaatcgtttttgtcattaggg 22593529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 23944095 - 23944195
Alignment:
Q  187 ccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattaggg 286  Q
    |||||||||||| ||  | ||||||||||||| |||  |||| |||| ||||||| || |||| |||  ||| ||||||||||| ||||| |||| ||||    
T  23944095 ccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcgaatcatacttatcatcaggg 23944194  T
Q  287 g 287  Q
    |    
T  23944195 g 23944195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 38839715 - 38839619
Alignment:
Q  189 attttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattagg 285  Q
    |||||||||||||  | ||||||| ||||||||||||||| || | |||||||||  ||||||||||||| | ||||||||| ||||| ||||||||    
T  38839715 attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtgatcttgatcttcttcgttccacaatcgaatcctacttttcattagg 38839619  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 49897912 - 49897986
Alignment:
Q  210 aacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattag 284  Q
    ||||||||| ||| ||||| |||| |||||||||| |||| ||| |||||||||||||||| || ||||||||||    
T  49897912 aacttcttcttctccttcattcaacatgtgatctccatctcctttgttctagaatcgaatcataattgtcattag 49897986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 24874606 - 24874734
Alignment:
Q  176 acaaccaattaccattttcatctcaattatatcaaacttctt-catcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtac 274  Q
    |||| |||||||||||||||| | ||  | ||||||||| || ||||| | | | |||| ||||||||||| |||| ||| ||||||||||||||  |||    
T  24874606 acaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgatctctgtcttattcattctagaatcgaatgctac 24874705  T
Q  275 ttgtcattaggg--gaattatcctcaatt 301  Q
    ||||||||||||  ||||||||| |||||    
T  24874706 ttgtcattagggatgaattatccgcaatt 24874734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 46080979 - 46081047
Alignment:
Q  176 acaaccaattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctc 244  Q
    |||| |||||||||||||||||||||  | || |||||||||||||| |||||||||| |||| |||||    
T  46080979 acaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaatctc 46081047  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 52432674 - 52432762
Alignment:
Q  181 caattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaat 269  Q
    |||||||||||||||||||||  | || |||||||||||||| ||||| | || | |||||||| ||||  || |||||| ||||||||    
T  52432674 caattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatctaatttgttctataatcgaat 52432762  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 24873773 - 24873884
Alignment:
Q  176 acaaccaattaccattttcatctcaattatatcaaacttctt-catcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtac 274  Q
    |||| |||||||||||||||| | ||  | ||||||||| || ||||| | | | |||| ||||||||||| |||| ||| ||||||||||||||  |||    
T  24873773 acaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgatctctgtcttattcattctagaatcgaatgctac 24873872  T
Q  275 ttgtcattaggg 286  Q
    ||| ||||||||    
T  24873873 ttgacattaggg 24873884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 68113 - 68198
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaat 269  Q
    |||||||||| || ||||  | ||| ||||||||||||| ||||| | || |||||||||| ||||| ||||||| | ||||||||    
T  68113 ttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaat 68198  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 3232171 - 3232244
Alignment:
Q  211 acttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattag 284  Q
    |||||||||||||||||| |||| |||| ||||| ||||  ||  |||||| |||||||| ||||| |||||||    
T  3232171 acttcttcatcttcttcattcaacatgtaatctccatctctttacttctagtatcgaatcatacttatcattag 3232244  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 41148649 - 41148593
Alignment:
Q  230 tcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattaggg 286  Q
    |||| ||||||| || |||| |||||||||||||||||||  ||||| |||||||||    
T  41148649 tcaacatgtgatatccatctccttcgttctagaatcgaattctacttttcattaggg 41148593  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 25062498 - 25062603
Alignment:
Q  176 acaaccaattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtact 275  Q
    |||| |||||||| ||||||||||||  ||||||||||||||||||||||||  ||||  ||| |||| | ||||||||  || ||||| ||||| ||||    
T  25062498 acaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttgtaatctttttcttcttcaatccagaattgaatcatact 25062597  T
Q  276 tgtcat 281  Q
    ||||||    
T  25062598 tgtcat 25062603  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 46431204 - 46431110
Alignment:
Q  189 attttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcatta 283  Q
    ||||| |||||||| | |||||||||||||||||||||   |||| | || ||||  ||||||||| ||| |||||| |||| ||||||||||||    
T  46431204 atttttatctcaataacatcaaacttcttcatcttcttagttcaacacgtaatcttcatcttcttctttcaagaatcaaatcttacttgtcatta 46431110  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 25062357 - 25062463
Alignment:
Q  206 atcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcattagggg--aattatcctcaattta 303  Q
    ||||||||||||||||| ||||| | || |||||||||  |||| ||| |||| | |||| |||| ||||||| ||||||||  ||||| |||||||| |    
T  25062357 atcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctcaattca 25062456  T
Q  304 tcgagga 310  Q
    || ||||    
T  25062457 tcaagga 25062463  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 15131634 - 15131561
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgtt 257  Q
    |||||||||| |||||||  | |||||| |||||||||| ||||| |||  ||||||||||||| | |||||||    
T  15131634 ttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatctctatttacttcgtt 15131561  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 305
Target Start/End: Complemental strand, 13149144 - 13149017
Alignment:
Q  179 accaattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgt 278  Q
    |||||||||||||| ||||||||  | |||||| |||||||||| ||| | |||||||||||| |||||||  ||| ||| ||||| ||| | |||||||    
T  13149144 accaattaccattt-catctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccagaattgaaccctacttgt 13149046  T
Q  279 cattagggg--aattatcctcaatttatc 305  Q
    || ||||||  || ||||| |||||||||    
T  13149045 cactaggggtaaactatccccaatttatc 13149017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 37010404 - 37010301
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcatta 283  Q
    ||||||||||||||||||  | ||||||||| ||||| |  |||| | || ||||||||||||||| |||| ||| | ||||||||| || |||| ||||    
T  37010404 ttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctccttcattccataatcgaatcatatttgttatta 37010305  T
Q  284 gggg 287  Q
    ||||    
T  37010304 gggg 37010301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 7590374 - 7590282
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtactt 276  Q
    |||||| |||||| ||||  | |||||| |||||||||||||||| ||| |||||| |||  ||||||||||||  ||||||| ||| |||||    
T  7590374 ttaccaatttcatttcaagaacatcaaatttcttcatcttcttcattcactatgtggtcttcatcttcttcgtttcagaatcgtatcttactt 7590282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 32166697 - 32166608
Alignment:
Q  181 caattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatc 270  Q
    |||||| ||||||||||||||  | ||||||||||||||||| ||| | |||| |||| ||||  ||||  |||||| |||||| |||||    
T  32166697 caattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatc 32166608  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 39341215 - 39341315
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcatta 283  Q
    ||||||||||||||| ||  ||||||||||| ||||||| ||||| |||| ||| |||||| || | |||||||||| ||| ||||| || || ||||||    
T  39341215 ttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttatcatta 39341314  T
Q  284 g 284  Q
    |    
T  39341315 g 39341315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 46303408 - 46303483
Alignment:
Q  206 atcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcatt 282  Q
    ||||||||||||||||||||| | |||| |||||||||| || ||||| |||||| ||| ||||| |||||||||||    
T  46303408 atcaaacttcttcatcttctttattcaacatgtgatctccat-ttctttgttctataattgaatcctacttgtcatt 46303483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 54437645 - 54437689
Alignment:
Q  176 acaaccaattaccattttcatctcaattatatcaaacttcttcat 220  Q
    ||||| ||||||||||||||||||||| | || ||||||||||||    
T  54437645 acaacaaattaccattttcatctcaataacattaaacttcttcat 54437689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 32342608 - 32342715
Alignment:
Q  176 acaaccaattaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtact 275  Q
    |||| |||||| ||||||||||||||  | ||||||||| |||||||  |||| |||| ||| ||||||||| || ||||||| |||||| |||| || |    
T  32342608 acaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctctatttttttcgttccagaatcaaatcatatt 32342707  T
Q  276 tgtcatta 283  Q
    | ||||||    
T  32342708 tatcatta 32342715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 32047190 - 32047309
Alignment:
Q  184 ttaccattttcatctcaattatatcaaacttcttcatcttcttcactcaatatgtgatctctatcttcttcgttctagaatcgaatcgtacttgtcatta 283  Q
    ||||||||||||||||||  | |||||||||||||||||  |||| |||| || |||| |   |||||||| ||| | ||| ||||| ||||| ||||||    
T  32047190 ttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcatta 32047289  T
Q  284 gggg--aattatcctcaatt 301  Q
    | ||  ||||||||||||||    
T  32047290 gaggtaaattatcctcaatt 32047309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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