View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0084_2D_low_4 (Length: 1076)

Name: NF0084_2D_low_4
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0084_2D_low_4
NF0084_2D_low_4
[»] chr6 (13 HSPs)
chr6 (368-1058)||(1407562-1408244)
chr6 (18-299)||(1407220-1407501)
chr6 (114-232)||(29694308-29694429)
chr6 (923-1068)||(1414367-1414512)
chr6 (824-1068)||(1410886-1411136)
chr6 (824-894)||(1419835-1419905)
chr6 (924-989)||(1419917-1419982)
chr6 (113-232)||(27673668-27673789)
chr6 (173-232)||(6454549-6454607)
chr6 (824-894)||(1414286-1414356)
chr6 (153-234)||(7592727-7592809)
chr6 (163-229)||(28985478-28985544)
chr6 (149-230)||(20834586-20834668)
[»] chr4 (13 HSPs)
chr4 (113-266)||(41259991-41260147)
chr4 (116-232)||(37626721-37626840)
chr4 (114-232)||(35827743-35827863)
chr4 (149-261)||(48497391-48497504)
chr4 (117-232)||(52837938-52838056)
chr4 (124-232)||(37858207-37858319)
chr4 (149-229)||(41163046-41163127)
chr4 (157-232)||(53654298-53654374)
chr4 (157-232)||(21865193-21865268)
chr4 (157-232)||(21921054-21921129)
chr4 (188-234)||(48582185-48582231)
chr4 (113-232)||(388360-388483)
chr4 (172-232)||(14124205-14124265)
[»] chr3 (8 HSPs)
chr3 (113-234)||(47510748-47510872)
chr3 (157-266)||(44765307-44765417)
chr3 (114-246)||(3432601-3432736)
chr3 (157-232)||(54153873-54153949)
chr3 (112-232)||(42005352-42005475)
chr3 (149-232)||(32375246-32375331)
chr3 (172-226)||(25118640-25118694)
chr3 (172-232)||(9248404-9248464)
[»] chr5 (12 HSPs)
chr5 (120-232)||(42641118-42641233)
chr5 (113-232)||(30251941-30252063)
chr5 (149-232)||(25731221-25731306)
chr5 (113-234)||(31112407-31112531)
chr5 (114-234)||(1637965-1638088)
chr5 (113-232)||(7736304-7736426)
chr5 (150-232)||(1041932-1042014)
chr5 (172-218)||(24782459-24782505)
chr5 (172-232)||(1042049-1042109)
chr5 (157-232)||(10511101-10511176)
chr5 (172-241)||(14157044-14157113)
chr5 (149-233)||(10418600-10418685)
[»] chr1 (11 HSPs)
chr1 (113-232)||(26701516-26701638)
chr1 (113-232)||(4448997-4449120)
chr1 (149-232)||(8772426-8772510)
chr1 (113-231)||(12188639-12188760)
chr1 (113-234)||(44603630-44603754)
chr1 (156-231)||(15330851-15330926)
chr1 (151-264)||(7330515-7330629)
chr1 (120-232)||(2193263-2193378)
chr1 (114-276)||(42723891-42724058)
chr1 (149-214)||(48615464-48615530)
chr1 (173-232)||(4489321-4489380)
[»] chr2 (10 HSPs)
chr2 (121-232)||(31921241-31921354)
chr2 (123-267)||(31915043-31915190)
chr2 (163-232)||(35005224-35005294)
chr2 (120-232)||(8033267-8033380)
chr2 (125-232)||(12800787-12800896)
chr2 (172-232)||(2396737-2396797)
chr2 (166-232)||(18967746-18967812)
chr2 (172-261)||(31598089-31598177)
chr2 (157-265)||(38373369-38373478)
chr2 (198-234)||(34235450-34235486)
[»] scaffold0007 (1 HSPs)
scaffold0007 (149-232)||(246539-246623)
[»] chr8 (12 HSPs)
chr8 (112-267)||(12956216-12956371)
chr8 (917-1048)||(3600501-3600632)
chr8 (161-232)||(29374551-29374622)
chr8 (157-232)||(41168661-41168738)
chr8 (917-1048)||(14339368-14339499)
chr8 (113-232)||(27982318-27982436)
chr8 (113-232)||(28039620-28039738)
chr8 (126-222)||(44167166-44167265)
chr8 (157-261)||(3423718-3423823)
chr8 (149-273)||(31505495-31505619)
chr8 (172-234)||(13636242-13636304)
chr8 (172-234)||(13736655-13736717)
[»] chr7 (9 HSPs)
chr7 (114-267)||(2256412-2256567)
chr7 (149-232)||(22680730-22680814)
chr7 (113-233)||(23070207-23070330)
chr7 (113-232)||(31860271-31860393)
chr7 (157-232)||(7833560-7833636)
chr7 (113-234)||(25240277-25240401)
chr7 (157-229)||(31245263-31245336)
chr7 (119-232)||(40019467-40019582)
chr7 (172-232)||(45411267-45411327)
[»] scaffold0166 (1 HSPs)
scaffold0166 (172-218)||(24842-24888)


Alignment Details
Target: chr6 (Bit Score: 580; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 368 - 1058
Target Start/End: Original strand, 1407562 - 1408244
Alignment:
Q  368 cactctaactgagttgttcattttaaaggaaacaagtcgaaattaatagataatataatttcaagggtgtatttggcaatttacaaagtttagagattat 467  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1407562 cactttaactgagttgttcattttaaaggaaacaagtcgaaattaatagataatataatttcaagggtgtatttggcaatttacaaagtttagagattat 1407661  T
Q  468 ttgtcaaaaa-gaaaagtttagagattattttgaccaacaatcataatttctatgattaatttgtctatctactcgaaagtaaattaaggtaatgagtaa 566  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1407662 ttgtcaaaaaagaaaagtttagagattattttgaccaacaatcataatttctatgattaatttgtctatctactcgaaagtaaattaaggtaatgagtaa 1407761  T
Q  567 tcnnnnnnnnnnnttaaggtaatgagtaatgttatagaagtgtataattgtaaacaacttcttgcaacaaaattgtcggtgtataaattatttatattat 666  Q
    ||           ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1407762 tcaaaaaagaaaattaaggtaatgagtaatgttataaaagtgtataattgtaaacaactacttgcaacaaaattgtcggtgtataaattatttatattat 1407861  T
Q  667 aaagtacaaaactatatcctctaaagatactgtgaaatagtcactgcttcactgccatgatctttacaattgagtaataaatatataggaccactttgat 766  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||           ||| |||||||||||||||||||||||||||||||||||||    
T  1407862 aaagtacaaaactatatcctctaaagatactatgaaatagtcactgct-----------atccttacaattgagtaataaatatataggaccactttgat 1407950  T
Q  767 caacaaaaaatttatgcaacaaaaacaca--gtgattgaattctacaacctcctcaacaatgaattctatgagattaattcatgtactttggtttttcaa 864  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1407951 caacaaaaaatttatgcaacaaaaacacatagtgattgaattctacaacctcctcaacaatgaattctatgagattaattcatgtactttggtttttcaa 1408050  T
Q  865 tctgtgtgtgacatttacattcattcaagtcctaagtgagaatgtctataactcaaataaatgtgagtaccctgcaatttacaattttggtgactcaaat 964  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1408051 tctgtgtgtgacatttacattcattcaagtcctaagtgagaatgtctataactcaaagaaatgtgagtaccctgcaatttacaattttggtgactcaaat 1408150  T
Q  965 tcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataagctactttggaagcaccacaggaagagcttctgatg 1058  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1408151 tcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataagctactttggaagcaccacaggaagagcttctgatg 1408244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 1407220 - 1407501
Alignment:
Q  18 agaaattaataggatttggatattaaagtgagaaaagcaactatagttggttttacaaattcatgatttattaaagggtcttactgatcgatattctaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  1407220 agaaattaataggatttggatattaaagtgagaaaagcaactatagttggtttaacaaattcatgatttattaaagggttttactaatcgatatcctaag 1407319  T
Q  118 ggcaatggttaatgattttattattagaaactgtcttaaaaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaacttactt 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  1407320 ggcaatggttaatgatttcattattagaaactgtcttaaaaatacatgtctttattttttcttagtaataattacatcacttttcgatgcaaacttactt 1407419  T
Q  218 attttagtactttaatcgatacttcaagaacaatagttaacattctccttcattaaaatgtacctataatatttatatttga 299  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  1407420 attttagtactttaatcgatactacaagaacaatggttaacattcttcttcattaaaatgtacctataatatttatatttga 1407501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 29694429 - 29694308
Alignment:
Q  114 taagggcaatggttaatgattttattattagaaac--tgtcttaaaaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaa 210  Q
    ||||| |||||||||| |||| ||||| ||||||   | ||||  |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||    
T  29694429 taaggacaatggttaaggattctattaatagaaatattatcttggaaatacaagtttttatttttgtcttaacaataattacatcacttttcaatgcaaa 29694330  T
Q  211 cttacttattttagtactttaa 232  Q
    ||||||||||||||||||||||    
T  29694329 cttacttattttagtactttaa 29694308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 923 - 1068
Target Start/End: Original strand, 1414367 - 1414512
Alignment:
Q  923 aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa 1022  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |   | |||||| ||| |||  ||||   ||||||||||| ||||    
T  1414367 aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa 1414466  T
Q  1023 gctactttggaagcaccacaggaagagcttctgatgtccatctcat 1068  Q
    ||| |||||||| ||   |||||||||||||||||| || ||||||    
T  1414467 gcttctttggaaacatatcaggaagagcttctgatggccgtctcat 1414512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 824 - 1068
Target Start/End: Original strand, 1410886 - 1411136
Alignment:
Q  824 atgaattctatgagattaattcatgtactttggtttttcaatctgtgtgtgacatttacattcattcaagtcctaagtg---agaatgtcta---taact 917  Q
    ||||||||||||||  |||||||| ||||||||| ||||||||| | |||| ||| |||||| |||||||||  |||||   |||||| | |   |||||    
T  1410886 atgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggcaatagtaact 1410985  T
Q  918 caaataaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatgg 1017  Q
    | |  ||||||| ||||||||||||||| || |||||||| |||||||| ||||| ||| | | | |||||| ||  |||| ||||    ||||||| ||    
T  1410986 ctagcaaatgtgtgtaccctgcaatttataactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacgg 1411085  T
Q  1018 tataagctactttggaagcaccacaggaagagcttctgatgtccatctcat 1068  Q
     ||||||| |||||||| ||   |||||||||||||||||| || ||||||    
T  1411086 aataagcttctttggaaacatatcaggaagagcttctgatggccgtctcat 1411136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 824 - 894
Target Start/End: Original strand, 1419835 - 1419905
Alignment:
Q  824 atgaattctatgagattaattcatgtactttggtttttcaatctgtgtgtgacatttacattcattcaagt 894  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||| |||||||| |||||| ||||||||    
T  1419835 atgaattctatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtacatttattcaagt 1419905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 924 - 989
Target Start/End: Original strand, 1419917 - 1419982
Alignment:
Q  924 aatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaa 989  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||||||||| | ||| ||||||    
T  1419917 aatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactgcatatgcaa 1419982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 27673668 - 27673789
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaac--tgtcttaaaaatacaagtctttatttttt-cttaacaataattacatcacttttcgatacaa 209  Q
    |||||||||||| |||| ||||  |||| ||||||   ||||||  ||||||||||||||||||||| |||| ||||||||| | |||| ||||||| ||    
T  27673668 ctaagggcaatgattaaagattccattactagaaatgttgtcttggaaatacaagtctttattttttgcttagcaataatta-accactcttcgatataa 27673766  T
Q  210 acttacttattttagtactttaa 232  Q
    |||||||||||||| || |||||    
T  27673767 acttacttattttactaatttaa 27673789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 6454607 - 6454549
Alignment:
Q  173 tttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||||||||||||||||||  ||||| |||| |||||||||||||||||||| |||||    
T  6454607 tttttcttaacaataattacacaacttt-cgatgcaaacttacttattttagtattttaa 6454549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 824 - 894
Target Start/End: Original strand, 1414286 - 1414356
Alignment:
Q  824 atgaattctatgagattaattcatgtactttggtttttcaatctgtgtgtgacatttacattcattcaagt 894  Q
    |||||||  ||||| ||||||||||||||||||| |||||| |||| |||||||| || ||| ||||||||    
T  1414286 atgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagt 1414356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 7592809 - 7592727
Alignment:
Q  153 ttaaaaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatc 234  Q
    |||||||||||||| |||| | || || || |||||||||||||||||||  ||  |||||||||||||||| ||||||||||    
T  7592809 ttaaaaatacaagtttttactcttgtcctagcaataattacatcactttttaatttaaacttacttattttaatactttaatc 7592727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 28985478 - 28985544
Alignment:
Q  163 aagtctttattttt-tcttaacaataattacatcacttttcgatacaaacttacttattttagtactt 229  Q
    |||| ||||||||| ||| | ||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  28985478 aagtttttatttttgtctcagcaataattacatcactttt-gatgcaaacttacttattttaatactt 28985544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 20834668 - 20834586
Alignment:
Q  149 tgtcttaaaaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaacttacttattttagtacttt 230  Q
    |||||||||||||||||  ||||||||| | ||||||||||||| || ||||||  ||||||| |||  |||||||| |||||    
T  20834668 tgtcttaaaaatacaagattttatttttgttttaacaataattatattactttttaatacaaatttatctattttagaacttt 20834586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 41259991 - 41260147
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtctttattttttcttaa-caataattacatcacttttcgatacaa 209  Q
    ||||||||||||||||| ||||  |||| ||||||||  ||||| |||||||||||||||||||||| || | |||| |||||| ||||||||||| |||    
T  41259991 ctaagggcaatggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttattttttttttatcaatgattacaccacttttcgatgcaa 41260090  T
Q  210 acttacttattttagtactttaatcgatacttcaagaacaatagttaacattctcct 266  Q
    |||||||||||||| |||||||| |||| |  |||| ||||| ||||||||| ||||    
T  41260091 acttacttattttaatactttaaccgatgcaccaaggacaatggttaacattttcct 41260147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 37626840 - 37626721
Alignment:
Q  116 agggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaact 212  Q
    |||||||||||||| ||||| |||| || |||||  |||||  ||||||||||||||| |||||||||| |||| || ||| ||||||||||| ||||||    
T  37626840 agggcaatggttaaggatttcattaatataaactttgtcttggaaatacaagtctttacttttttcttatcaatgatcacaccacttttcgatgcaaact 37626741  T
Q  213 tacttattttagtactttaa 232  Q
    ||||||||||||||||||||    
T  37626740 tacttattttagtactttaa 37626721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 35827743 - 35827863
Alignment:
Q  114 taagggcaatggttaatgattttattattagaaac--tgtcttaaaaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaac 211  Q
    |||||||| ||||||| |||| ||||| |||||||  ||| ||||||||| |||| ||  ||||||||||||||||||||||||| |||||||  |||||    
T  35827743 taagggcattggttaaggattatattaatagaaacgatgttttaaaaataaaagttttatttttttcttaacaataattacatcatttttcgaagcaaac 35827842  T
Q  212 ttacttattttagtactttaa 232  Q
    |||||||||||| || |||||    
T  35827843 ttacttattttaatattttaa 35827863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 48497504 - 48497391
Alignment:
Q  149 tgtcttaaaaatacaagtctttatttttt-cttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatcgatacttcaagaa 247  Q
    |||||| |||||||||||||||||||||| |||| |||| |||| | |||||||||||||||||||| |||||||| |||||||||| ||  | ||| ||    
T  48497504 tgtcttgaaaatacaagtctttatttttttcttatcaatgattataccacttttcgatacaaacttatttattttaatactttaatcaatgttccaaaaa 48497405  T
Q  248 caatagttaacatt 261  Q
    |||| |||||||||    
T  48497404 caatggttaacatt 48497391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 52837938 - 52838056
Alignment:
Q  117 gggcaatggttaatgattttattattagaaac--tgtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaactt 213  Q
    ||||||||||||| ||||| |||| |||||||  | | ||  ||||||| ||||||| |||||||||||||||||||| | || |||||||| |||||||    
T  52837938 gggcaatggttaaagatttcattaatagaaacattattttggaaatacatgtctttacttttttcttaacaataattataccatttttcgatgcaaactt 52838037  T
Q  214 acttattttagtactttaa 232  Q
    |||||||||| ||||||||    
T  52838038 acttattttaatactttaa 52838056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 37858319 - 37858207
Alignment:
Q  124 ggttaatgattttattattagaaactgt--cttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttatt 220  Q
    |||||| ||||| |||| |||||||| |  ||| ||||||||||| |||| |||||||||| ||||||||| ||||||||||||| ||||||| ||||||    
T  37858319 ggttaaggatttgattaatagaaactttatcttgaaaatacaagtttttacttttttcttagcaataattaaatcacttttcgatgcaaacttccttatt 37858220  T
Q  221 t-tagtactttaa 232  Q
    | |||||||||||    
T  37858219 tatagtactttaa 37858207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 41163127 - 41163046
Alignment:
Q  149 tgtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactt 229  Q
    ||||||| |||||||||| |||| |||||||||| ||||||||||| |||||||||||  ||||| ||||||||||||||||    
T  41163127 tgtcttagaaatacaagtatttacttttttcttagcaataattacaccacttttcgatgtaaactaacttattttagtactt 41163046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 53654374 - 53654298
Alignment:
Q  157 aaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    ||||||||||||||| |||||||||  ||||||||||| || |||||||| ||||| ||||||||||| ||||||||    
T  53654374 aaatacaagtctttacttttttcttcgcaataattacaccatttttcgatgcaaacatacttattttaatactttaa 53654298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 21865268 - 21865193
Alignment:
Q  157 aaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||||| | |||| ||||||||| |||| |||||| || |||||||| |||||||||||||||||  |||||||    
T  21865268 aaatacaaatttttactttttcttagcaatgattacaccatttttcgatgcaaacttacttattttaaaactttaa 21865193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 21921129 - 21921054
Alignment:
Q  157 aaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||||| | |||| ||||||||| |||| |||||| || |||||||| |||||||||||||||||  |||||||    
T  21921129 aaatacaaatttttactttttcttagcaatgattacaccatttttcgatgcaaacttacttattttaaaactttaa 21921054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 48582231 - 48582185
Alignment:
Q  188 attacatcacttttcgatacaaacttacttattttagtactttaatc 234  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||    
T  48582231 attacaccatttttcgatgcaaacttacttattttagtactttaatc 48582185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 388360 - 388483
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta--ttttttcttaacaataattacatcacttttcgataca 208  Q
    |||||||||||| |||||||||  ||||  |||||||  ||||| |||||| |||||||||  |||||||||  |||||||| || |  ||||| || ||    
T  388360 ctaagggcaatgattaatgattccattaaaagaaactttgtcttgaaaatataagtctttacattttttcttcgcaataattgcacccattttccatgca 388459  T
Q  209 aacttacttattttagtactttaa 232  Q
    || ||| |||||||||||||||||    
T  388460 aatttatttattttagtactttaa 388483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 14124265 - 14124205
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||||||| ||| ||||||| || |||||||| |||| |||||||||||| ||||||||    
T  14124265 ttttttcttagcaaaaattacaccatttttcgatgcaaatttacttattttaatactttaa 14124205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 8e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 47510872 - 47510748
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtctttatttttt-cttaacaataattacatcacttttcgatacaa 209  Q
    |||| ||||||| || ||||||  |||| ||||||||  |||||  |||||||| ||||| |||||| |||||||||||||||| || ||||||||||||    
T  47510872 ctaaaggcaatgattgatgattccattaatagaaactatgtcttggaaatacaaatctttgtttttttcttaacaataattacaccatttttcgatacaa 47510773  T
Q  210 acttacttattttagtactttaatc 234  Q
    |||||||||||||||||||||||||    
T  47510772 acttacttattttagtactttaatc 47510748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 44765307 - 44765417
Alignment:
Q  157 aaatacaagtctttattt-tttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatcgatacttcaagaacaatagtt 255  Q
    ||||||||||||||| || ||||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||||| ||||  ||| || ||| |||    
T  44765307 aaatacaagtctttacttatttcttagcaataattacaccacttttcaatgcaaacttacttattttaatactttaatcaataccccaaaaataatggtt 44765406  T
Q  256 aacattctcct 266  Q
    |||||||||||    
T  44765407 aacattctcct 44765417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 3432736 - 3432601
Alignment:
Q  114 taagggcaatggttaatgattttattattagaaactgt--cttaaaaatacaagtctttatttt-ttcttaacaataattacatcacttttcgatacaaa 210  Q
    ||||| |||||||||||||||  |||| |||||||| |  ||| |||||| |||| |||| ||| |||||| |||||||||||||| |||| ||| ||||    
T  3432736 taaggacaatggttaatgattccattaatagaaactttatcttgaaaatataagtgtttactttgttcttagcaataattacatcattttttgatgcaaa 3432637  T
Q  211 cttacttattttagtactttaatcgatacttcaaga 246  Q
    |||| ||||||||||||||||| | |||| ||||||    
T  3432636 cttatttattttagtactttaaccaatacctcaaga 3432601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 54153949 - 54153873
Alignment:
Q  157 aaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    ||||||||||||||| |||||||||| |||| |||| | ||||||||||| ||||||||||||||||||||||||||    
T  54153949 aaatacaagtctttacttttttcttatcaatgattaaaccacttttcgatgcaaacttacttattttagtactttaa 54153873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 42005475 - 42005352
Alignment:
Q  112 tctaagggcaatggttaatgattttattattagaaactgtct--taaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgataca 208  Q
    |||||||||||||||||| ||||  |||| |||||| | | |  | ||||||||| |||||| |||||||||||||||||||| | || |||| ||| ||    
T  42005475 tctaagggcaatggttaaggattccattaatagaaattttatattgaaaatacaaatctttacttttttcttaacaataattagaccatttttagatgca 42005376  T
Q  209 aacttacttattttagtactttaa 232  Q
    |||||||||||| |||||||||||    
T  42005375 aacttacttattgtagtactttaa 42005352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 32375246 - 32375331
Alignment:
Q  149 tgtcttaaaaatacaagtctttatttttt--cttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||| ||||| ||||| ||||||||||  |||| ||||||||||| |||||||| || | ||||||||||||||||||||||||    
T  32375246 tgtcttgaaaattcaagtatttattttttttcttagcaataattacaccacttttcaatgctaacttacttattttagtactttaa 32375331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 25118640 - 25118694
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagta 226  Q
    |||||||||| |||| |||||| |||||||| || ||||||||||||||||||||    
T  25118640 ttttttcttagcaatgattacaccacttttcaatgcaaacttacttattttagta 25118694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 9248464 - 9248404
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||||||| |||| |||| | ||||||||||| |||||||| |||||||| ||||||||    
T  9248464 ttttttcttatcaatgattataccacttttcgatgcaaacttatttattttaatactttaa 9248404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 42641233 - 42641118
Alignment:
Q  120 caatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttact 216  Q
    |||| ||||| |||| ||||| ||||||||  ||||| |||||||||||||||| |||||||||| |||| |||||| || |||||||| ||||||||||    
T  42641233 caatagttaaggattctattaatagaaactttgtcttgaaaatacaagtctttacttttttcttatcaatgattacaccatttttcgatgcaaacttact 42641134  T
Q  217 tattttagtactttaa 232  Q
    ||||||||||||||||    
T  42641133 tattttagtactttaa 42641118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 30251941 - 30252063
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaa 209  Q
    ||||||||||||||||| ||||  |||| |||||| |  |||||  ||||||||||||||| |||||||||| ||||||||||| |||||||||||||||    
T  30251941 ctaagggcaatggttaaggattccattaatagaaattttgtcttggaaatacaagtctttacttttttcttagcaataattacaccacttttcgatacaa 30252040  T
Q  210 acttacttattttagtactttaa 232  Q
    |  || |||||||||||||||||    
T  30252041 atatatttattttagtactttaa 30252063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 25731306 - 25731221
Alignment:
Q  149 tgtcttaaaaatacaagtctttatttttt--cttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||||||||| ||| ||||||||||||  |||| |||||||||||  ||||||| || ||||||||||||||||||||||||||    
T  25731306 tgtcttaaaaattcaaatctttattttttttcttagcaataattacacaacttttctatgcaaacttacttattttagtactttaa 25731221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 31112407 - 31112531
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaac--tgtcttaaaaatacaagtctttattttttcttaac-aataattacatcacttttcgatacaa 209  Q
    ||||||||||||||||||||||  |||| ||||||   ||||||||||||||||| |||||  |||| ||||  |||||||||| ||  |||| ||||||    
T  31112407 ctaagggcaatggttaatgattccattaatagaaatattgtcttaaaaatacaaggctttacatttttttaaataataattacaccatatttcaatacaa 31112506  T
Q  210 acttacttattttagtactttaatc 234  Q
    |||||||||||||| || |||||||    
T  31112507 acttacttattttaatagtttaatc 31112531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 1637965 - 1638088
Alignment:
Q  114 taagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaa 210  Q
    ||||||||||||||||||||| ||||| || ||| |  |||||  |||||||| | |||| |||||||||| |||||||||||  |||||| ||| ||||    
T  1637965 taagggcaatggttaatgattctattaatataaattttgtcttggaaatacaaatttttacttttttcttagcaataattacacaactttttgatgcaaa 1638064  T
Q  211 cttacttattttagtactttaatc 234  Q
    |||| |||||||||| ||||||||    
T  1638065 cttatttattttagttctttaatc 1638088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 7736426 - 7736304
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaactgt--cttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaa 209  Q
    ||||||||||||||||| |||   |||| |||||||| |  ||| |||||||||||||||| |||||||||| |||| |||||  |||||||| ||  ||    
T  7736426 ctaagggcaatggttaaagatcccattaatagaaactttatcttgaaaatacaagtctttaattttttcttagcaatcattacgccacttttcaatggaa 7736327  T
Q  210 acttacttattttagtactttaa 232  Q
    |||||||||||| ||||||||||    
T  7736326 acttacttatttaagtactttaa 7736304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 1041932 - 1042014
Alignment:
Q  150 gtcttaaaaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    ||||| |||||| |||| ||  |||||||||| |||| |||||| || |||||||||||||||||||| ||||||||||||||    
T  1041932 gtcttgaaaatataagttttacttttttcttagcaattattacaccaattttcgatacaaacttactttttttagtactttaa 1042014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 24782459 - 24782505
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttactta 218  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||    
T  24782459 ttttttcttaacaataattacacaacttttcgatacaaacttactta 24782505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 1042049 - 1042109
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||||||| |||| |||||| || |||||||| ||||||||||| ||||||||||||||    
T  1042049 ttttttcttagcaattattacaccaattttcgatgcaaacttactttttttagtactttaa 1042109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 10511176 - 10511101
Alignment:
Q  157 aaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||||||||||  |||||||||| ||||||||||| || ||||| || |||| ||||| |||||| ||||||||    
T  10511176 aaatacaagtcttacttttttcttagcaataattacaccatttttcaatgcaaagttactcattttactactttaa 10511101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 14157044 - 14157113
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatcgatactt 241  Q
    |||| ||||| ||||||||||||||||| | ||| |||||||||||||||||  ||||||| | ||||||    
T  14157044 ttttgtcttatcaataattacatcacttattgatgcaaacttacttattttacaactttaaccaatactt 14157113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 10418685 - 10418600
Alignment:
Q  149 tgtcttaaaaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaat 233  Q
    |||||| ||||||||||| ||||||||| | |||||||||||||||  || |||   | |||| |||||||||||| |||||||||    
T  10418685 tgtcttcaaaatacaagtttttatttttgttttaacaataattacacaacattttatttcaaagttacttattttaatactttaat 10418600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 26701516 - 26701638
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaactgtct--taaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaa 209  Q
    |||||||||||||||||  || | |||| |||||||| |||  | ||||||||| |||||| |||||||||| |||| |||||||||||||||||| |||    
T  26701516 ctaagggcaatggttaaaaatctcattaatagaaactttctcttgaaaatacaaatctttacttttttcttatcaatcattacatcacttttcgatgcaa 26701615  T
Q  210 acttacttattttagtactttaa 232  Q
    |||||||||||| ||||||||||    
T  26701616 acttacttatttaagtactttaa 26701638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 4448997 - 4449120
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact---gtcttaaaaatacaagtctttatttt-ttcttaacaataattacatcacttttcgataca 208  Q
    ||||||||||||||||| ||||  ||||  |||||||   |||||| |||||||||| || ||||| |||||||||||||||||| || ||||| |||||    
T  4448997 ctaagggcaatggttaaggattccattaacagaaacttttgtcttagaaatacaagttttaatttttttcttaacaataattacaccatttttcaataca 4449096  T
Q  209 aacttacttattttagtactttaa 232  Q
    ||| || |||||||||||||||||    
T  4449097 aacctatttattttagtactttaa 4449120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 8772426 - 8772510
Alignment:
Q  149 tgtcttaaaaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||| |||||||||||||||| |||| ||||  ||||||||||| ||||||||||| |||| |||||||||||||||||||||    
T  8772426 tgtcttgaaaatacaagtctttacttttgtcttggcaataattacaccacttttcgatgcaaatttacttattttagtactttaa 8772510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 12188760 - 12188639
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaa 209  Q
    ||||| ||||| ||||| ||||  |||| ||||||||  |||||  |||||||| | |||| |||||||||| ||||||||||| || ||||| ||||||    
T  12188760 ctaagagcaatcgttaaggattccattaatagaaactttgtcttggaaatacaaatttttacttttttcttagcaataattacaccatttttcaatacaa 12188661  T
Q  210 acttacttattttagtacttta 231  Q
    | ||||||||||||||||||||    
T  12188660 aattacttattttagtacttta 12188639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 44603754 - 44603630
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtctttatttttt-cttaacaataattacatcacttttcgatacaa 209  Q
    ||||||||||||||||| |||   |||| || |||||  ||||| ||| ||||| |||||||||||| |||| |||| |||||| ||||||| ||  |||    
T  44603754 ctaagggcaatggttaaggatcccattaatataaactttgtcttgaaagtacaaatctttatttttttcttagcaatcattacaccactttttgaggcaa 44603655  T
Q  210 acttacttattttagtactttaatc 234  Q
    |||||||||||| ||||||||||||    
T  44603654 acttacttatttaagtactttaatc 44603630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 15330926 - 15330851
Alignment:
Q  156 aaaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaacttacttattttagtacttta 231  Q
    ||||||||| |||||| ||||||||| |||||||||||  | |||||||| ||||||| ||||||||| |||||||    
T  15330926 aaaatacaaatctttactttttcttagcaataattacacaatttttcgatgcaaactttcttattttaatacttta 15330851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 7330629 - 7330515
Alignment:
Q  151 tcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatcgatacttcaagaaca 249  Q
    |||| ||||||||||| |||  |||||||||| |||||||| ||||||||||| || ||  |||||||||||||||||||||| | ||  |||||| |||    
T  7330629 tcttgaaaatacaagtatttgcttttttcttagcaataattgcatcacttttcaatgcatgcttacttattttagtactttaaccaatgtttcaaggaca 7330530  T
Q  250 atagttaacattctc 264  Q
     |  |||||||||||    
T  7330529 ctcattaacattctc 7330515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 2193263 - 2193378
Alignment:
Q  120 caatggttaatgattttattattagaaactgt--cttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttact 216  Q
    |||| ||||| |||| ||||| |||||||| |  ||| |||||| || |||||| |||||||||| |||| |||||| |||||||||||  ||| |||||    
T  2193263 caatagttaaggattctattaatagaaactttatcttgaaaatataaatctttacttttttcttatcaatgattacaccacttttcgatgtaaatttact 2193362  T
Q  217 tattttagtactttaa 232  Q
    ||||||| ||||||||    
T  2193363 tattttaatactttaa 2193378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 276
Target Start/End: Complemental strand, 42724058 - 42723891
Alignment:
Q  114 taagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtct--tta--ttttttcttaacaataattacatcacttttcgatac 207  Q
    |||||||||||||||| ||||  |||| ||||||||  |||||  ||||||| ||||  |||  ||||||||||||||||||||||||  |||| | | |    
T  42724058 taagggcaatggttaaggattccattaatagaaactttgtctttgaaatacacgtctctttactttttttcttaacaataattacatc-ttttttggtgc 42723960  T
Q  208 aaacttacttattttagtactttaatcgatacttcaagaacaatagttaacattctccttcattaaaat 276  Q
    ||||||| ||||||||||| ||||| | || || ||||  ||||  ||||||||||||||  |||||||    
T  42723959 aaacttatttattttagtaatttaaccaatgctccaagggcaatgattaacattctccttttttaaaat 42723891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 48615530 - 48615464
Alignment:
Q  149 tgtcttaaaaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaactta 214  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||| | |||| ||| ||||||||    
T  48615530 tgtcttaaaaatacaagtttttatttttatcttaacgataattacataattttttgatgcaaactta 48615464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 4489321 - 4489380
Alignment:
Q  173 tttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    ||||||||| |||| ||||||| |||||||  | ||||||||||||||||| ||||||||    
T  4489321 tttttcttatcaatgattacataacttttctttgcaaacttacttattttaatactttaa 4489380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 5e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 31921354 - 31921241
Alignment:
Q  121 aatggttaatgattttattattagaaact--gtcttaaaaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaacttactta 218  Q
    |||||||||||||   |||| ||||||||  ||||| ||||||||||| |||||||||||||| |||| |||||| ||||||||||  ||||||||||||    
T  31921354 aatggttaatgatcccattaatagaaactttgtcttgaaaatacaagtatttattttttcttagcaatcattacaccacttttcgaggcaaacttactta 31921255  T
Q  219 ttttagtactttaa 232  Q
    ||| ||||||||||    
T  31921254 tttaagtactttaa 31921241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 123 - 267
Target Start/End: Original strand, 31915043 - 31915190
Alignment:
Q  123 tggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttat 219  Q
    ||||||| ||||  |||| ||||||||  ||||| |||||||||||||||| ||||||| ||  |||||||||| ||||||||||| |||||||||||||    
T  31915043 tggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttacttttttcatagaaataattacaccacttttcgatgcaaacttacttat 31915142  T
Q  220 tttagtactttaatcgatacttcaagaacaatagttaacattctcctt 267  Q
    |||| |||||||| | || |  |||| ||||| |||| ||||||||||    
T  31915143 tttaatactttaaccaatgccccaaggacaatggttaccattctcctt 31915190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 35005294 - 35005224
Alignment:
Q  163 aagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    ||||||||| |||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  35005294 aagtctttacttttttcttagcaatgattacaccacttttcgatgcaaacttacttattttagtactttaa 35005224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 8033267 - 8033380
Alignment:
Q  120 caatggttaatgattttattattagaaactgt--cttaaaaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaacttactt 217  Q
    ||||| |||| ||||| |||| |||||||| |  ||| ||||||||||| |||| ||||| ||| ||||||||||| ||||||||||| |||| ||||||    
T  8033267 caatgattaaggatttcattaatagaaactttatcttgaaaatacaagt-tttacttttttttatcaataattacaccacttttcgatgcaaatttactt 8033365  T
Q  218 attttagtactttaa 232  Q
    |||||| ||||||||    
T  8033366 attttaatactttaa 8033380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 12800896 - 12800787
Alignment:
Q  125 gttaatgattttattattagaaact--gtcttaaaaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaacttacttatttt 222  Q
    ||||||||||  |||| ||||||||  ||||| |||||| || | ||  |||||||||||||||||||| | || ||||||||||||| |||||||| ||    
T  12800896 gttaatgattccattaatagaaactttgtcttgaaaatataaattttacttttttcttaacaataattagaccaattttcgatacaaatttacttatctt 12800797  T
Q  223 agtactttaa 232  Q
    | ||||||||    
T  12800796 aatactttaa 12800787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 2396737 - 2396797
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    ||||||||| ||||| |||||| |||||||  ||||||| |||||||||||||||||||||    
T  2396737 ttttttcttgacaatgattacaccactttttaatacaaaattacttattttagtactttaa 2396797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 18967746 - 18967812
Alignment:
Q  166 tctttattttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||| |||||||||||||||||||||  |||||||| | ||||||||| ||||||| || |||||    
T  18967746 tctttactttttcttaacaataattacacaacttttcgttgcaaacttacgtattttaatattttaa 18967812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 31598089 - 31598177
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatcgatacttcaagaacaatagttaacatt 261  Q
    |||||||||| ||||||||| | |||||| |||| |||||||||||||||||||| ||||| | ||   ||||| ||||| |||||||||    
T  31598089 ttttttcttagcaataattataccacttt-cgatgcaaacttacttattttagtattttaaccaatgtctcaaggacaattgttaacatt 31598177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 38373369 - 38373478
Alignment:
Q  157 aaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatcgatacttcaagaacaatagtt 255  Q
    |||||||||| |||| |||| ||||| ||||||||||| || |||||||| |||| |||||||||||| || ||||| | || || ||||| |||| ||     
T  38373369 aaatacaagtttttacttttatcttagcaataattacaccatttttcgatgcaaatttacttattttaatattttaaccaatgctccaagagcaatggta 38373468  T
Q  256 aacattctcc 265  Q
    | ||||||||    
T  38373469 atcattctcc 38373478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 34235486 - 34235450
Alignment:
Q  198 ttttcgatacaaacttacttattttagtactttaatc 234  Q
    ||||||||||||||||| |||||||||||||||||||    
T  34235486 ttttcgatacaaacttaattattttagtactttaatc 34235450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 246539 - 246623
Alignment:
Q  149 tgtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||| ||||||||||| |||| |||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  246539 tgtcttgaaaatacaagtttttacttttttctgagcaataattacaccacttttcgatgcaaacttacttattttagtactttaa 246623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 12956371 - 12956216
Alignment:
Q  112 tctaagggcaatggttaatgattttattattagaaactgtcttaaaaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaac 211  Q
    |||||| |||||| |||| ||||  |||| || ||||| | ||  |||||||| |||||||||||||||| |||| |||||| || |||||||| |||||    
T  12956371 tctaagagcaatgattaaggattccattaataaaaactatgttggaaatacaattctttattttttcttagcaatgattacaccaattttcgatgcaaac 12956272  T
Q  212 ttacttattttagtactttaatcgatacttcaagaacaatagttaacattctcctt 267  Q
    ||||||| ||||||||||||| | || |  |||||  ||| |||||||||||||||    
T  12956271 ttacttactttagtactttaaccaatgccccaagagtaatggttaacattctcctt 12956216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 917 - 1048
Target Start/End: Original strand, 3600501 - 3600632
Alignment:
Q  917 tcaaataaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatg 1016  Q
    ||||| |||||||  ||||| ||||| ||||| ||||||||||| ||||||||||||||||| | | |||||| |    ||||||||  || ||||||||    
T  3600501 tcaaagaaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatg 3600600  T
Q  1017 gtataagctactttggaagcaccacaggaaga 1048  Q
    ||||||||| ||||||||||| | ||||||||    
T  3600601 gtataagcttctttggaagcatctcaggaaga 3600632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 29374551 - 29374622
Alignment:
Q  161 acaagtctttattttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||  ||| |||||||||||| ||||||||    
T  29374551 acaagtctttattttttcttagcaataattacaccacttttcgatgtaaatttacttattttactactttaa 29374622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 41168661 - 41168738
Alignment:
Q  157 aaatacaagtctttattttt-tcttaacaa-taattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    ||||||||||||||| |||| ||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||    
T  41168661 aaatacaagtctttacttttgtcttagcaaataattacatcacttttcaatgcaaacttacttattttagtactttaa 41168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 917 - 1048
Target Start/End: Original strand, 14339368 - 14339499
Alignment:
Q  917 tcaaataaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatg 1016  Q
    ||||| |||||||  ||||| ||||| ||||| ||||||||||| ||||||||||||||||| | | |||||| |    ||||||||  |  ||||||||    
T  14339368 tcaaagaaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatg 14339467  T
Q  1017 gtataagctactttggaagcaccacaggaaga 1048  Q
    ||||||||| ||||||||||| | ||||||||    
T  14339468 gtataagcttctttggaagcatctcaggaaga 14339499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 27982436 - 27982318
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaa 209  Q
    |||||||||||| |||| ||||  |||| ||||||||  |||||  ||||||||||||||| ||||||||||  ||| |||||| ||||||||    |||    
T  27982436 ctaagggcaatgattaaggattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagtaatgattacaccacttttc----caa 27982341  T
Q  210 acttacttattttagtactttaa 232  Q
    |||||||||||||||||||||||    
T  27982340 acttacttattttagtactttaa 27982318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 28039738 - 28039620
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaa 209  Q
    |||||||||||| |||| ||||  |||| ||||||||  |||||  ||||||||||||||| ||||||||||  ||| |||||| ||||||||    |||    
T  28039738 ctaagggcaatgattaaggattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagtaatgattacaccacttttc----caa 28039643  T
Q  210 acttacttattttagtactttaa 232  Q
    |||||||||||||||||||||||    
T  28039642 acttacttattttagtactttaa 28039620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 44167166 - 44167265
Alignment:
Q  126 ttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttatttt 222  Q
    ||||||||| ||||| ||||||||  |||||  |||||||| |||||| |||||||||| |||| ||||||  |||||||||| ||||||||||||||||    
T  44167166 ttaatgattctattaatagaaactttgtcttggaaatacaaatctttacttttttcttagcaatgattacacaacttttcgatgcaaacttacttatttt 44167265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 3423823 - 3423718
Alignment:
Q  157 aaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatcgatacttcaagaacaatagtt 255  Q
    |||| ||||| ||||||||| ||||| |||||||||||  | |||| | |||||| ||||||||||||||||||||| |||||| ||||  ||| |||||    
T  3423823 aaatgcaagtttttatttttgtcttagcaataattacacaagttttagttacaaaattacttattttagtactttaaccgatacctcaacgacactagtt 3423724  T
Q  256 aacatt 261  Q
    | ||||    
T  3423723 agcatt 3423718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 31505619 - 31505495
Alignment:
Q  149 tgtcttaaaaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatcgatacttcaagaa 247  Q
    ||||||| |||||| |||||||| |||| |||||||||||||||||| | ||||  ||||||| |||||||||||| |||||||| | || | | ||  |    
T  31505619 tgtcttagaaataccagtctttacttttgtcttaacaataattacattattttta-atacaaatttacttattttaatactttaaccaatgccttaaaga 31505521  T
Q  248 caatagttaacattctccttcattaa 273  Q
    |||| |||| |||||||||| |||||    
T  31505520 caattgttagcattctcctttattaa 31505495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 13636304 - 13636242
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatc 234  Q
    |||| |||||||||||| ||||  |||||| | |||||| |||||||||||| ||||||||||    
T  13636304 ttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaatc 13636242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 13736717 - 13736655
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaatc 234  Q
    |||| |||||||||||| ||||  |||||| | |||||| |||||||||||| ||||||||||    
T  13736717 ttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaatc 13736655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 2256412 - 2256567
Alignment:
Q  114 taagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtctttattttttcttaacaataattacatcacttttcgatacaaac 211  Q
    |||||| |||| |||| ||||  |||| ||||||||  |||||| |||| ||||| ||||||||||||||  ||| |||||| ||||||||||| |||||    
T  2256412 taagggtaatgattaaggattccattaatagaaactatgtcttagaaatgcaagtatttattttttcttaggaatgattacaccacttttcgatgcaaac 2256511  T
Q  212 ttacttattttagtactttaatcgatacttcaagaacaatagttaacattctcctt 267  Q
    |||||||||||| ||||| || | ||| | ||||| |||| |||| |||| |||||    
T  2256512 ttacttattttaatacttcaaccaatattccaagagcaatggttagcattatcctt 2256567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 22680814 - 22680730
Alignment:
Q  149 tgtcttaaaaatacaagtctttatttttt-cttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||||| |||||| ||||||||||||||| |||| |||| |||||| ||||||||||| ||||||||||||||| ||||||||||    
T  22680814 tgtcttgaaaataaaagtctttatttttttcttagcaatcattacaccacttttcgatgcaaacttacttatttaagtactttaa 22680730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 23070207 - 23070330
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaa 209  Q
    |||||| ||||||||||  |||  |||| ||||||||  |||||  ||||||||||||||| |||||||||| |||| |||||| ||||||||||| |||    
T  23070207 ctaaggacaatggttaagaattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagcaatgattacaccacttttcgatgcaa 23070306  T
Q  210 acttacttattttagtactttaat 233  Q
    | |||||||||||| |||||||||    
T  23070307 atttacttattttaatactttaat 23070330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 31860271 - 31860393
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtctttatttt-ttcttaacaataattacatcacttttcgatacaa 209  Q
    ||||||||||||||||| |||| || || |  |||||  |||||  ||||||||||||||| ||| |||||| ||||||||||| || |||||||| |||    
T  31860271 ctaagggcaatggttaaagattctaataatgaaaactttgtcttggaaatacaagtctttactttcttcttatcaataattacaccatttttcgatgcaa 31860370  T
Q  210 acttacttattttagtactttaa 232  Q
    ||||||| |||||||||||||||    
T  31860371 acttactcattttagtactttaa 31860393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 7833560 - 7833636
Alignment:
Q  157 aaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||  || |||||||| |||||||||||||||||    
T  7833560 aaatacaagtctttacttttttcttagcaataattacatcatttttttatgcaaacttatttattttagtactttaa 7833636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 25240401 - 25240277
Alignment:
Q  113 ctaagggcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtctttatttttt-cttaacaataattacatcacttttcgatacaa 209  Q
    |||||| ||||||||||  ||| ||||| |||||| |  |||||  ||| |||| |||||||||||| |||| |||| |||||| |||| |||||| |||    
T  25240401 ctaaggacaatggttaagaattctattaatagaaattttgtcttggaaaaacaaatctttatttttttcttatcaatgattacaccactgttcgatgcaa 25240302  T
Q  210 acttacttattttagtactttaatc 234  Q
    ||||||||||||| |||||||||||    
T  25240301 acttacttattttcgtactttaatc 25240277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 31245263 - 31245336
Alignment:
Q  157 aaatacaagtctttattttt-tcttaacaataattacatcacttttcgatacaaacttacttattttagtactt 229  Q
    ||||||||||||| | |||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||    
T  31245263 aaatacaagtcttcacttttgtcttagcaataattacaccatttttcgatgcaaacttacttattttagtactt 31245336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 40019467 - 40019582
Alignment:
Q  119 gcaatggttaatgattttattattagaaact--gtcttaaaaatacaagtcttta-ttttttcttaacaataattacatcacttttcgatacaaacttac 215  Q
    ||||||||||| ||||  |||| || |||||  |||||  ||||||||||||||| |||||||||| ||||||| |||||||||||| || ||||||||     
T  40019467 gcaatggttaaggattccattaataaaaactttgtcttggaaatacaagtctttacttttttcttagcaataat-acatcacttttcaatgcaaacttat 40019565  T
Q  216 ttattttagtactttaa 232  Q
    |||||||| ||||||||    
T  40019566 ttattttaatactttaa 40019582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 45411327 - 45411267
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttacttattttagtactttaa 232  Q
    |||| ||| |||||||||||||| |||||| | || ||| |||||||||||||||||||||    
T  45411327 ttttatctcaacaataattacataactttttgttataaagttacttattttagtactttaa 45411267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 24842 - 24888
Alignment:
Q  172 ttttttcttaacaataattacatcacttttcgatacaaacttactta 218  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||    
T  24842 ttttttcttaacaataattacacaacttttcgatacaaacttactta 24888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 925 times since January 2019
Visitors: 1288