View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_40 (Length: 314)
Name: NF0084_2D_low_40
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 299
Target Start/End: Original strand, 42919039 - 42919332
Alignment:
| Q |
6 |
tgagatagagcctattacagtgaaccattctattccggattgctgtggattagttcttcgctgttctgatggtactattcttcacactggggattggaag |
105 |
Q |
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| T |
42919039 |
tgagatagagcctattacagtgagccattctattccggattgctgtggattagttcttcgctgttctgatggtactattcttcacactggggattggaag |
42919138 |
T |
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| Q |
106 |
gttagaattttattttgtttctcaatgtattgtaccttccgtcaaccgtgaatctcctgttgctcaacatgctgattcaacagattgatgaaacgccatt |
205 |
Q |
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| T |
42919139 |
gttagaattttattttgtttctcaatgtattgtaccttccgtcaactgtgaatctcctgttgctcaacatgctgattcaacagattgatgaaacgccatt |
42919238 |
T |
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| Q |
206 |
agatggtaaagtttttgatcgggaagctctagaggaactgtccaaagaaggagtcacattggtgagtcacttgtatttttaattgttctgatgt |
299 |
Q |
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| T |
42919239 |
agatggtaaagtttttgatcgggaagctctagaggaactgtccaaagaaggagtcacattggtgagtcacttgtatttttaattgttctgatgt |
42919332 |
T |
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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 274
Target Start/End: Complemental strand, 33964050 - 33963809
Alignment:
| Q |
34 |
tctattccggattgctgtggattagttcttcgctgttctgatggtactattcttcacactggggattggaaggttagaatttta-ttttgtttctcaatg |
132 |
Q |
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|||||||| || || |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| || |
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| T |
33964050 |
tctattcccgactgttgtggactagttcttcgttgttctgatgggactattcttcacactggggattggaaggttagaattttacttttaattctcagtg |
33963951 |
T |
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| Q |
133 |
tattgtaccttccgtcaaccgtgaatctcctgttgctcaacatgctgattcaacagattgatgaaacgccattagatggtaaagtttttgatcgggaagc |
232 |
Q |
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| T |
33963950 |
tattgtacctttcatttaccttgaatctcctgttgctgaaaaggttgattcatcagattgacgagacaccacttgacgggaaagtttttgatcgggaggg |
33963851 |
T |
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| Q |
233 |
tctagaggaactgtccaaagaaggagtcacattggtgagtca |
274 |
Q |
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| T |
33963850 |
tttagaggaactctctaaagaaggagtaacattggtaagtca |
33963809 |
T |
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