View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0084_2D_low_40 (Length: 314)
Name: NF0084_2D_low_40
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0084_2D_low_40
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 299
Target Start/End: Original strand, 42919039 - 42919332
Alignment:
Q
6
tgagatagagcctattacagtgaaccattctattccggattgctgtggattagttcttcgctgttctgatggtactattcttcacactggggattggaag
105
Q
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
42919039
tgagatagagcctattacagtgagccattctattccggattgctgtggattagttcttcgctgttctgatggtactattcttcacactggggattggaag
42919138
T
Q
106
gttagaattttattttgtttctcaatgtattgtaccttccgtcaaccgtgaatctcctgttgctcaacatgctgattcaacagattgatgaaacgccatt
205
Q
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
T
42919139
gttagaattttattttgtttctcaatgtattgtaccttccgtcaactgtgaatctcctgttgctcaacatgctgattcaacagattgatgaaacgccatt
42919238
T
Q
206
agatggtaaagtttttgatcgggaagctctagaggaactgtccaaagaaggagtcacattggtgagtcacttgtatttttaattgttctgatgt
299
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
42919239
agatggtaaagtttttgatcgggaagctctagaggaactgtccaaagaaggagtcacattggtgagtcacttgtatttttaattgttctgatgt
42919332
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 274
Target Start/End: Complemental strand, 33964050 - 33963809
Alignment:
Q
34
tctattccggattgctgtggattagttcttcgctgttctgatggtactattcttcacactggggattggaaggttagaatttta-ttttgtttctcaatg
132
Q
|||||||| || || |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
T
33964050
tctattcccgactgttgtggactagttcttcgttgttctgatgggactattcttcacactggggattggaaggttagaattttacttttaattctcagtg
33963951
T
Q
133
tattgtaccttccgtcaaccgtgaatctcctgttgctcaacatgctgattcaacagattgatgaaacgccattagatggtaaagtttttgatcgggaagc
232
Q
||||||||||| | | ||| |||||||||||||||| || | | ||||||| |||||||| || || ||| | || || ||||||||||||||||| |
T
33963950
tattgtacctttcatttaccttgaatctcctgttgctgaaaaggttgattcatcagattgacgagacaccacttgacgggaaagtttttgatcgggaggg
33963851
T
Q
233
tctagaggaactgtccaaagaaggagtcacattggtgagtca
274
Q
| |||||||||| || ||||||||||| |||||||| |||||
T
33963850
tttagaggaactctctaaagaaggagtaacattggtaagtca
33963809
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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