View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_41 (Length: 309)
Name: NF0084_2D_low_41
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 29408440 - 29408731
Alignment:
| Q |
1 |
tagagtgaggactggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaaaagaaa |
100 |
Q |
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| T |
29408440 |
tagagtgaggactggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaaaagaaa |
29408539 |
T |
|
| Q |
101 |
aaagttagctatggtgatttgcgctaagatggtcaacttcatcaatgatgtgtggcttaaatatgattgcaatgagcaatattgttcgacgatacttttg |
200 |
Q |
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| T |
29408540 |
aaagttagctatggtgatttgcgctaagatggtcaacttcattaatgatgtgtggcttaaatatgattgcaatgagcaatattgttccacgatacttttg |
29408639 |
T |
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| Q |
201 |
gtataatgtacaatacattatctcaagatataagttgacaatgttttcaatggatttaatgatagttgatggtaaacaagggcttccataaata |
294 |
Q |
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| T |
29408640 |
g--taatgtacaatacattatctcaagatataagttgacaaggttttcaatggatttaatgatagttgatggtaaacaagggcttccataaata |
29408731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 29456183 - 29456102
Alignment:
| Q |
13 |
tggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaa |
94 |
Q |
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||||||| ||||||||||||| || ||||| |||||||||||||||||||||| || || ||||||| ||||| |||||| |
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| T |
29456183 |
tggaatatactttgtagattacaataatggcatcaaaagatatccaaaaatgtctgcaatctggtttaagaattttctacaa |
29456102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 29425705 - 29425821
Alignment:
| Q |
13 |
tggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaaaagaaaaaagttagctat |
112 |
Q |
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||||||| |||| ||||||| || |||| |||||||||||||||||||||||||| ||||||| | ||||| |||||| | |||| |||| ||| |
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| T |
29425705 |
tggaatatacttcatagattacaatgatggcctcaaaagatatccaaaaatgtcagctgtatggttcaagaattttctacaacataaaatagttgcatat |
29425804 |
T |
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| Q |
113 |
ggtgatttgcgctaaga |
129 |
Q |
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||||||| |||||||| |
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| T |
29425805 |
ggtgattcacgctaaga |
29425821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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