View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_43 (Length: 301)
Name: NF0084_2D_low_43
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_43 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 29953866 - 29954160
Alignment:
| Q |
7 |
ggacatcatatcttaaccatgaaaaatttaccattcgttaccataaataaccaaaaacgcttaactttaaagactatctatccatcataaaatagaaagc |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29953866 |
ggacattatatcttaaccatgaaaaatttaccattcgttaccataaataaccaaaaacgcttaactttacagactatctatccatcataaaatagaaagc |
29953965 |
T |
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| Q |
107 |
cacagacagagataaaatatgagaaaacaactatgcttgttctcaaagatacaagcatcattactggccctcaaaagattccagccattgcttttgtttc |
206 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |
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| T |
29953966 |
cacagacagagagaaaatatgagaaaacaactatgcttgttctcaaagatacaagcatcatcactggtcctcaaaagattccagtcattgcttttgtttc |
29954065 |
T |
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| Q |
207 |
tcaataatgcaagtatcataactttgatcctccaaagaattttaacattaattttaaaaatgagaaatactgcaacacactctttagaatatact |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29954066 |
tcaataatgcaagtatcataactttgatcctccaaagaatttcaacattaattttaaaaatgagaaatactgcaacacactctttagaatatact |
29954160 |
T |
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