View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_44 (Length: 285)
Name: NF0084_2D_low_44
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 40697946 - 40698201
Alignment:
| Q |
20 |
aattgatggaagggaaatagaagaatgtaccaatctggtctttagtttcaaaaacataagtccaatttgtttgaggttggatagggcaatttgtaccaga |
119 |
Q |
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| T |
40697946 |
aattgatggaagggaaatagaagaatgtaccaatctggtctttagtttcaaaaacataagtccaatttgtttgaggttggatagggcaatttgtaccaga |
40698045 |
T |
|
| Q |
120 |
cactccatcttgccaagaattttgcctttgttgtatgccattcctatgcataacaaaaccataattctgcaggtttagttcaagcaccatttctaaatct |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40698046 |
cactccatcttgccaagaattttgcctttgttgtatgccattcctatgcataacaaaaccataattctgcatgtttagttcaagcaccatttctaaatct |
40698145 |
T |
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| Q |
220 |
aaaacaaaaacattgaaaacataaagcaccatgtaccatgtaaatagcacaggttc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40698146 |
aaaacaaaaacattgaaaacataaagcaccatgtaccatgtaaatagcacaggttc |
40698201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 6796820 - 6796776
Alignment:
| Q |
121 |
actccatcttgccaagaattttgcctttgttgtatgccattccta |
165 |
Q |
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| T |
6796820 |
actccatcttgccatgaatttttcctttgtttaatgccattccta |
6796776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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