View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_53 (Length: 233)
Name: NF0084_2D_low_53
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 49070552 - 49070362
Alignment:
| Q |
29 |
ccttatgaggagcttcatagtatattgttcttcttctcatgggaggcgagttcaatgtctcaacagaaaatttaaccagcatttcacgcccaccaacatc |
128 |
Q |
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| T |
49070552 |
ccttatgaggaccttcatagtatattgttcttcttctcataggaggcgagttcaatgtctcaacagaaaatttaaccagcatttcacgcccaccaacatc |
49070453 |
T |
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| Q |
129 |
cttcaattgaaacggaaaacaaagtttcattattaagataaaaacaaatagatatgatagtgactaaccgatccatccaatgcaacaagtg |
219 |
Q |
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| T |
49070452 |
cttcaattgaaacggaaaacaaagtttcattattaagataaaaacaaatagatatgatagtgactaaccgatccatccaacgcagcaagtg |
49070362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 49074981 - 49075020
Alignment:
| Q |
5 |
gaggtactatgatcatccaagtatccttatgaggagcttc |
44 |
Q |
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| T |
49074981 |
gaggtactatgatcatccaagtatccttatgaggagcttc |
49075020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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