View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_2D_low_56 (Length: 231)
Name: NF0084_2D_low_56
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_2D_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 29404979 - 29404876
Alignment:
| Q |
78 |
gatatgttatttagtacaaagtgttcataaatagtggttatagcagccagataacattgtagcatagtggtgattcgcaattgacaacactgagtcaaac |
177 |
Q |
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| T |
29404979 |
gatatgttatttagtacaaagtgttcataaatagtggttatagcagccagataacattgtagcatagtggtgattcgcaattgacaacactgagtcaaag |
29404880 |
T |
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| Q |
178 |
catc |
181 |
Q |
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|||| |
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| T |
29404879 |
catc |
29404876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 29405001 - 29405085
Alignment:
| Q |
1 |
caaatttcgccaaggtatgtagctccactatagctgctatttgacaacacagctttgacttatcggtgttcggctatgatatgtt |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29405001 |
caaatttcgccaaggtatgtagctccactatagctgctatttgacaacacagctttgacttatcggtgttcggctatgatatgtt |
29405085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 29404858 - 29404822
Alignment:
| Q |
176 |
accatcgtacaccagttacattacagttagtcaaacc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
29404858 |
accatcgtacaccagttacattacagttagtcaaacc |
29404822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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