View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0084_2D_low_7 (Length: 989)

Name: NF0084_2D_low_7
Description: NF0084_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0084_2D_low_7
NF0084_2D_low_7
[»] chr2 (10 HSPs)
chr2 (301-757)||(32281485-32281947)
chr2 (19-106)||(32282144-32282231)
chr2 (667-756)||(38996501-38996590)
chr2 (687-757)||(28926074-28926144)
chr2 (685-756)||(38955839-38955910)
chr2 (782-846)||(29404158-29404223)
chr2 (209-242)||(32282006-32282039)
chr2 (685-757)||(22625386-22625458)
chr2 (667-756)||(28125536-28125625)
chr2 (780-844)||(29406776-29406840)
[»] chr1 (9 HSPs)
chr1 (301-756)||(15700721-15701182)
chr1 (19-106)||(15701379-15701466)
chr1 (916-977)||(48178123-48178184)
chr1 (685-756)||(22964007-22964078)
chr1 (782-846)||(48177990-48178055)
chr1 (687-749)||(46555509-46555572)
chr1 (209-242)||(15701241-15701274)
chr1 (707-756)||(24819183-24819232)
chr1 (685-745)||(3908828-3908888)
[»] chr7 (6 HSPs)
chr7 (552-756)||(30061492-30061696)
chr7 (620-756)||(20077276-20077412)
chr7 (19-70)||(12512853-12512904)
chr7 (689-756)||(39742297-39742364)
chr7 (644-717)||(4407816-4407889)
chr7 (209-242)||(12512682-12512715)
[»] chr6 (8 HSPs)
chr6 (598-757)||(31442516-31442675)
chr6 (687-757)||(31665629-31665700)
chr6 (587-717)||(7867849-7867979)
chr6 (669-750)||(30836464-30836545)
chr6 (687-750)||(15296151-15296215)
chr6 (669-756)||(20915980-20916067)
chr6 (685-756)||(826731-826802)
chr6 (685-756)||(21762022-21762093)
[»] chr3 (9 HSPs)
chr3 (667-756)||(1529165-1529255)
chr3 (587-717)||(45069931-45070060)
chr3 (669-757)||(1141743-1141831)
chr3 (646-757)||(15291460-15291570)
chr3 (685-756)||(22424369-22424440)
chr3 (641-717)||(11582613-11582689)
chr3 (685-757)||(52041383-52041455)
chr3 (687-731)||(37605421-37605466)
chr3 (685-757)||(39484807-39484880)
[»] chr4 (9 HSPs)
chr4 (687-756)||(12094856-12094925)
chr4 (686-757)||(6898752-6898823)
chr4 (641-717)||(10427603-10427678)
chr4 (685-750)||(9451248-9451313)
chr4 (641-713)||(9201332-9201404)
chr4 (641-708)||(9199798-9199865)
chr4 (685-756)||(24257703-24257774)
chr4 (643-756)||(27067874-27067987)
chr4 (782-811)||(36225507-36225536)
[»] chr8 (7 HSPs)
chr8 (687-757)||(42315341-42315412)
chr8 (687-757)||(45244285-45244356)
chr8 (643-717)||(26083942-26084016)
chr8 (610-757)||(26981034-26981181)
chr8 (687-756)||(23828343-23828413)
chr8 (610-717)||(5334312-5334419)
chr8 (782-811)||(1565799-1565828)
[»] chr5 (7 HSPs)
chr5 (687-756)||(37337323-37337393)
chr5 (641-717)||(9045162-9045238)
chr5 (587-683)||(19557814-19557910)
chr5 (687-757)||(26110687-26110758)
chr5 (667-713)||(6697978-6698024)
chr5 (669-749)||(31981800-31981879)
chr5 (687-757)||(11300764-11300835)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 301 - 757
Target Start/End: Complemental strand, 32281947 - 32281485
Alignment:
Q  301 tattgattttaatgtgctatcagccttggtaatacacagctgcacactatattcagttgaagatatagagaataggctgcatgggaatttgattaatgga 400  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32281947 tattgattttaatgtgctatcagccttggtaatacacagtcgcacactatattcagttgaagatgtagagaataggctgcatgggaatttgattaatgga 32281848  T
Q  401 aagtaggtttaacattaattatatggaagatggaaaagnnnnnnnna--aaacgtggggcaattagttgtagtttgagagagaaatttcaaattcaaaca 498  Q
    |||||||||||||||||||| |||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32281847 aagtaggtttaacattaattctatggaagatggaaaagtttttttttttaaacgtggggcaattagttgtagtttgagagagaaatttcaaattcaaaca 32281748  T
Q  499 cagacatatatataa--cacatgcagatatggtcatgggaaagagctgacggtggaagctattaaatgccataataagataaccat--gtaaatgcatcg 594  Q
    ||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  32281747 cagacatatatatatagcacatgcagatatgggcatgggaaagagctgacggtggaagctattaaatgccataataagataaccatatgtacatgcatcg 32281648  T
Q  595 gctgacttcaagatctgtgggaggcaaattttgaatttaaaattacagtgatgattaggataagcacttggaagaatttaatgcttgtaggatggaggga 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32281647 gctgacttcaagatctgtgggaggcaaattttgaatttaaaattagagtgatgattaggataagcacttggaagaatttaatgcttgtaggatggaggga 32281548  T
Q  695 aaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  32281547 aaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagata 32281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 32282231 - 32282144
Alignment:
Q  19 aaaacatgtcaaagcatcacttctcatcaaaatctcactctctaccatcttcaatatatgatctcaaatctagacatgtgacaatccc 106  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  32282231 aaaacatgtcaaagtatcacttctcatcaaagtctcactctctaccatcttcaatatatgatctcaaatctcgacatgccacaatccc 32282144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 667 - 756
Target Start/End: Original strand, 38996501 - 38996590
Alignment:
Q  667 agaatttaatgcttgtaggatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    |||||| |||| ||||  ||||||||||||||||||| ||||||||||||| ||  ||||||||| || |||| |||||||||| |||||    
T  38996501 agaattaaatgtttgtttgatggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 687 - 757
Target Start/End: Complemental strand, 28926144 - 28926074
Alignment:
Q  687 tggagggaaaatattagattaa-aattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||| || |||| |||||||||| ||||||    
T  28926144 tggagggaaaa-attaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagata 28926074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 685 - 756
Target Start/End: Original strand, 38955839 - 38955910
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||||||||| ||| |||||||||||  ||||| |||| || | || ||||||||||||||||    
T  38955839 gatggagggaaaatattaggttagaattagggttatcaatagtttgatcagataagctttagtaagtaagat 38955910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 782 - 846
Target Start/End: Original strand, 29404158 - 29404223
Alignment:
Q  782 gctaacttacacccacttaaaaacactaagtgtaa-ctagtaagttacacccacttgttttttact 846  Q
    |||||||||||||||| ||||||||||||||| ||  ||| ||| ||||||||||||| |||||||    
T  29404158 gctaacttacacccacctaaaaacactaagtgcaagttagcaagctacacccacttgtattttact 29404223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 32282039 - 32282006
Alignment:
Q  209 gaaattgtggagggacatttttggggaaatgagt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  32282039 gaaattgtggagggacatttttggggaaatgagt 32282006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 22625386 - 22625458
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||||||||||||||||| |||||||||||||  | ||| |||||| || ||||  ||||||||| ||||||    
T  22625386 gatggagggaaaatattaggttaaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 667 - 756
Target Start/End: Complemental strand, 28125625 - 28125536
Alignment:
Q  667 agaatttaatgcttgtaggatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    |||||| ||||||||||  ||||||||||||||||||  | ||||||||||     ||||||||| || |||| |||||||||| |||||    
T  28125625 agaattaaatgcttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 780 - 844
Target Start/End: Complemental strand, 29406840 - 29406776
Alignment:
Q  780 ccgctaacttacacccacttaaaaacactaagtgtaa-ctagtaagttacacccacttgtttttta 844  Q
    |||||||||||||| ||| ||||||||||||| ||||  ||| |||||||||||||||||| ||||    
T  29406840 ccgctaacttacactcacctaaaaacactaag-gtaagttagcaagttacacccacttgttattta 29406776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 301 - 756
Target Start/End: Complemental strand, 15701182 - 15700721
Alignment:
Q  301 tattgattttaatgtgctatcagccttggtaatacacagctgcacactatattcagttgaagatatagagaataggctgcatgggaatttgattaatgga 400  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15701182 tattgattttaatgtgctatcagccttggtaatacacagtcgcacactatattcagttgaagatgtagagaataggctgcatgggaatttgattaatgga 15701083  T
Q  401 aagtaggtttaacattaattatatggaagatggaaaagnnnnnnnna--aaacgtggggcaattagttgtagtttgagagagaaatttcaaattcaaaca 498  Q
    |||||||||||||||||||| |||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15701082 aagtaggtttaacattaattctatggaagatggaaaagtttttttttttaaacgtggggcaattagttgtagtttgagagagaaatttcaaattcaaaca 15700983  T
Q  499 cagacatatatataa--cacatgcagatatggtcatgggaaagagctgacggtggaagctattaaatgccataataagataaccatgt--aaatgcatcg 594  Q
    ||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||||    
T  15700982 cagacatatatatatagcacatgcagatatgggcatgggaaagagctgacggtggaagctattaaatgccataataagataaccatatttacatgcatcg 15700883  T
Q  595 gctgacttcaagatctgtgggaggcaaattttgaatttaaaattacagtgatgattaggataagcacttggaagaatttaatgcttgtaggatggaggga 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15700882 gctgacttcaagatctgtgggaggcaaattttgaatttaaaattagagtgatgattaggataagcacttggaagaatttaatgcttgtaggatggaggga 15700783  T
Q  695 aaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  15700782 aaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 15701466 - 15701379
Alignment:
Q  19 aaaacatgtcaaagcatcacttctcatcaaaatctcactctctaccatcttcaatatatgatctcaaatctagacatgtgacaatccc 106  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  15701466 aaaacatgtcaaagtatcacttctcatcaaagtctcactctctaccatcttcaatatatgatctcaaatctcgacatgccacaatccc 15701379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 916 - 977
Target Start/End: Original strand, 48178123 - 48178184
Alignment:
Q  916 gtaacaaactttctcaatttcccctgattctcgccttttagttctatgacttttgatgtcca 977  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  48178123 gtaacaaactttctcaatttcccttgtttctcgccttttagttctatgacttttgatgtcca 48178184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 685 - 756
Target Start/End: Complemental strand, 22964078 - 22964007
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||||| || |||| ||||||||||||||||    
T  22964078 gatggagggaaaatattaggttagaattagggttaccaatagcttgaccagacaagctttagtaagtaagat 22964007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 782 - 846
Target Start/End: Original strand, 48177990 - 48178055
Alignment:
Q  782 gctaacttacacccacttaaaaacactaagtgtaac-tagtaagttacacccacttgttttttact 846  Q
    |||||||||| |||||||||||| |||| ||||||| || |||| |||||||||||||||||||||    
T  48177990 gctaacttacgcccacttaaaaatactaggtgtaacttaataaggtacacccacttgttttttact 48178055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 687 - 749
Target Start/End: Complemental strand, 46555572 - 46555509
Alignment:
Q  687 tggagggaaaatattagattaa-aattagggttactaatagcttgagcaaacaaactttagtaa 749  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| |  |||| |||||||||    
T  46555572 tggagggaaaatattaggttaagaattagggttactaatagcttgaccggacaagctttagtaa 46555509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 15701274 - 15701241
Alignment:
Q  209 gaaattgtggagggacatttttggggaaatgagt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  15701274 gaaattgtggagggacatttttggggaaatgagt 15701241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 707 - 756
Target Start/End: Complemental strand, 24819232 - 24819183
Alignment:
Q  707 aaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||||||||||    
T  24819232 aaaattagggttagtaatagcttgaccaaacaagctttggtaagtaagat 24819183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 745
Target Start/End: Original strand, 3908828 - 3908888
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaacttta 745  Q
    |||| |||||||||| ||| |||||||||||||||| |||||||||| || |||| |||||    
T  3908828 gatgaagggaaaatagtaggttaaaattagggttaccaatagcttgatcagacaagcttta 3908888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 552 - 756
Target Start/End: Complemental strand, 30061696 - 30061492
Alignment:
Q  552 aagctattaaatgccataataagataaccatgtaaatgcatcggctgacttcaagatctgtgggaggcaaattttgaatttaaaattacagtgatgatta 651  Q
    ||||||||||||||||||||||||| ||  |   |||||||||||  |||||||||  ||||||||| ||| ||||||||||| |||| |||||||||||    
T  30061696 aagctattaaatgccataataagattactcttctaatgcatcggcaaacttcaagagttgtgggagggaaaatttgaatttaagattagagtgatgatta 30061597  T
Q  652 ggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagt 751  Q
    |||||||||||| |||||||| ||| ||||||  ||||||||||||||||||  | ||||||||||     ||||||||| || |||| ||||||||| |    
T  30061596 ggataagcactttgaagaattaaatacttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgatcagacaagctttagtaaat 30061497  T
Q  752 aagat 756  Q
    |||||    
T  30061496 aagat 30061492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 620 - 756
Target Start/End: Original strand, 20077276 - 20077412
Alignment:
Q  620 aaattttgaatttaaaattacagtgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaattagggtta 719  Q
    |||||| |||||| ||  || |||||||||||||| |||||||  |  |||||||||||||| | ||||||||||||||||||| |||||||||||||      
T  20077276 aaatttagaatttgaacctaaagtgatgattaggaaaagcactaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtat 20077375  T
Q  720 ctaatagcttgagcaaacaaactttagtaagtaagat 756  Q
       || |||||| ||||||| |||||||||| |||||    
T  20077376 gatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 12512904 - 12512853
Alignment:
Q  19 aaaacatgtcaaagcatcacttctcatcaaaatctcactctctaccatcttc 70  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12512904 aaaacatgtcaaagcatcacttctcatcaaagtctcactctctaccatcttc 12512853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 689 - 756
Target Start/End: Original strand, 39742297 - 39742364
Alignment:
Q  689 gagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||||| |||| ||||||||||  |||||||||| ||||||| |||||||||| |||||    
T  39742297 gagggaaaatattaggttaagattagggttatcaatagcttgatcaaacaagctttagtaagaaagat 39742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 717
Target Start/End: Complemental strand, 4407889 - 4407816
Alignment:
Q  644 gatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaattagggt 717  Q
    ||||||||||| || ||||  | ||||||||||| |||   ||||||||||||||||||| |||||||||||||    
T  4407889 gatgattaggaaaaacactaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggt 4407816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 12512715 - 12512682
Alignment:
Q  209 gaaattgtggagggacatttttggggaaatgagt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  12512715 gaaattgtggagggacatttttggggaaatgagt 12512682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 598 - 757
Target Start/End: Complemental strand, 31442675 - 31442516
Alignment:
Q  598 gacttcaagatctgtgggaggcaaattttgaatttaaaattacagtgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaa 697  Q
    ||||||||||| || |||||| ||| ||||||||| || ||| |||||||||||||| |||||||| | ||||||||||||||| | |||||||||||||    
T  31442675 gacttcaagatgtgggggagggaaaatttgaatttgaacttagagtgatgattaggaaaagcacttaggagaatttaatgcttggatgatggagggaaaa 31442576  T
Q  698 tattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    |||||| |||||||||||||   | || |||||| ||||||| |||||||||| ||||||    
T  31442575 tattaggttaaaattagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 687 - 757
Target Start/End: Original strand, 31665629 - 31665700
Alignment:
Q  687 tggagggaaaatattagattaa-aattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  31665629 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 587 - 717
Target Start/End: Original strand, 7867849 - 7867979
Alignment:
Q  587 atgcatcggctgacttcaagatctgtgggaggcaaattttgaatttaaaattacagtgatgattaggataagcacttggaagaatttaatgcttgtagga 686  Q
    |||||||||| ||||||||||  | ||||||| ||| ||||||||| | |||   ||||| |||| ||||||||||| ||| |||| ||||||||||  |    
T  7867849 atgcatcggcagacttcaagagttatgggagggaaaatttgaatttgagatttgtgtgatcattaagataagcacttagaaaaattaaatgcttgtacaa 7867948  T
Q  687 tggagggaaaatattagattaaaattagggt 717  Q
    |||||||||||||||||  | ||||||||||    
T  7867949 tggagggaaaatattagggttaaattagggt 7867979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 669 - 750
Target Start/End: Original strand, 30836464 - 30836545
Alignment:
Q  669 aatttaatgcttgtaggatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaag 750  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||||| |  ||| |||||| || |||| ||||||||||    
T  30836464 aattaaatgcttgggggatggagggaaaatattagattaaaattagggtgaacaattgcttgatcagacaagctttagtaag 30836545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 750
Target Start/End: Complemental strand, 15296215 - 15296151
Alignment:
Q  687 tggagggaaaatattagattaaaa-ttagggttactaatagcttgagcaaacaaactttagtaag 750  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||  |||||| ||||||||||    
T  15296215 tggagggaaaatattaggttaaaaattagggttacttatagcttgacaaaacaagctttagtaag 15296151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 669 - 756
Target Start/End: Original strand, 20915980 - 20916067
Alignment:
Q  669 aatttaatgcttgtaggatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||| |||  |  || |||||| || |||| |||||||||| |||||    
T  20915980 aatttaatgcttggatgatggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 756
Target Start/End: Original strand, 826731 - 826802
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||||||||| ||||||||| ||| |  |||||||||| || ||||  ||||||||| |||||    
T  826731 gatggagggaaaatattaggttaaaattaaggtgaacaatagcttgaccagacaagttttagtaagaaagat 826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 756
Target Start/End: Complemental strand, 21762093 - 21762022
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||||| ||| ||||||||||||| |  |||||||||| || ||||  ||||||||| |||||    
T  21762093 gatggagggaaaatagtaggttaaaattagggtgagcaatagcttgatcagacaagttttagtaagaaagat 21762022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 667 - 756
Target Start/End: Complemental strand, 1529255 - 1529165
Alignment:
Q  667 agaatttaatgcttgtaggatggagggaaaatattagattaa-aattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    |||||| | |||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||| |||||||||| |||||    
T  1529255 agaattaattgcttgtatgatggagggaaaaaattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 587 - 717
Target Start/End: Complemental strand, 45070060 - 45069931
Alignment:
Q  587 atgcatcggctgacttcaagatctgtgggaggcaaattttgaatttaaaattacagtgatgattaggataagcacttggaagaatttaatgcttgtagga 686  Q
    |||||||||| ||||||||||  | ||||||| |||||| |||||| | |||   |||||||||||||||||||||| ||| |||| ||||||||||  |    
T  45070060 atgcatcggcagacttcaagagttatgggaggaaaattt-gaatttgagatttatgtgatgattaggataagcacttagaaaaattaaatgcttgtacaa 45069962  T
Q  687 tggagggaaaatattagattaaaattagggt 717  Q
    |||||||||||||||||  | ||||||||||    
T  45069961 tggagggaaaatattagggttaaattagggt 45069931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 669 - 757
Target Start/End: Complemental strand, 1141831 - 1141743
Alignment:
Q  669 aatttaatgcttgtaggatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||| || |  ||| |||||| ||||||| |||||||||| ||||||    
T  1141831 aattaaatgcttgggggatggagggaaaatattagattaaaattagagtgaacaattgcttgaccaaacaagctttagtaagaaagata 1141743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 646 - 757
Target Start/End: Complemental strand, 15291570 - 15291460
Alignment:
Q  646 tgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaacttta 745  Q
    |||||||||| ||||||| |||| | ||||||||  ||  |||||||||||| ||||| |||| |||||||| |  |||||||||| ||||||| |||||    
T  15291570 tgattaggattagcacttagaaggagttaatgctaatacaatggagggaaaa-attaggttaagattagggtaaacaatagcttgaccaaacaagcttta 15291472  T
Q  746 gtaagtaagata 757  Q
    ||||| ||||||    
T  15291471 gtaagaaagata 15291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 685 - 756
Target Start/End: Original strand, 22424369 - 22424440
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||||||||| ||||||||||||| |  |||||||||| || | ||||||||||||| |||||    
T  22424369 gatggagggaaaatattaggttaaaattagggtgaacaatagcttgaccagataaactttagtaagaaagat 22424440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 641 - 717
Target Start/End: Complemental strand, 11582689 - 11582613
Alignment:
Q  641 agtgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaattagggt 717  Q
    |||||| ||||||| || ||||  ||||||||||||| ||| | || |||||||||||||||| |||||||||||||    
T  11582689 agtgattattaggaaaaacactaagaagaatttaatgtttggatgacggagggaaaatattaggttaaaattagggt 11582613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 52041383 - 52041455
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    |||||| |||||||||||| ||||||||||||| |  |||||||||| || |||| |||||||||| ||||||    
T  52041383 gatggaaggaaaatattaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaagata 52041455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 731
Target Start/End: Original strand, 37605421 - 37605466
Alignment:
Q  687 tggagggaaaatattagattaa-aattagggttactaatagcttga 731  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  37605421 tggagggaaaatattaggttaagaattagggttactaatagcttga 37605466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 39484807 - 39484880
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggt-tactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||||||||||||||||| |||||| ||||||  ||  ||||||||| ||||||| |||||||||| ||||||    
T  39484807 gatggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagata 39484880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 687 - 756
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  687 tggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||||| |||||    
T  12094856 tggagggaaaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 686 - 757
Target Start/End: Original strand, 6898752 - 6898823
Alignment:
Q  686 atggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||| |||||||||||| |||| ||||||||||| |||||||||| ||||||| |||||||||| ||||||    
T  6898752 atggacggaaaatattaggttaagattagggttaccaatagcttgatcaaacaagctttagtaagaaagata 6898823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 641 - 717
Target Start/End: Original strand, 10427603 - 10427678
Alignment:
Q  641 agtgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaattagggt 717  Q
    |||||||||||||| || ||||  ||||||||||||||||| | ||||||||| ||||||||| |||||||||||||    
T  10427603 agtgatgattaggaaaaacactaagaagaatttaatgcttggatgatggaggg-aaatattaggttaaaattagggt 10427678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 750
Target Start/End: Complemental strand, 9451313 - 9451248
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaag 750  Q
    ||||||||||||||||||| ||||||||||||| |  |||||||||| || |||| ||||||||||    
T  9451313 gatggagggaaaatattaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaag 9451248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 641 - 713
Target Start/End: Complemental strand, 9201404 - 9201332
Alignment:
Q  641 agtgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaatta 713  Q
    |||||||||||||| ||| |||  | ||||||||||||||| | ||||| ||||||||||||| |||||||||    
T  9201404 agtgatgattaggaaaagaactaaggagaatttaatgcttggatgatggtgggaaaatattaggttaaaatta 9201332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 641 - 708
Target Start/End: Complemental strand, 9199865 - 9199798
Alignment:
Q  641 agtgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaa 708  Q
    |||||||||||||| ||| |||  | ||||||||||||||| | ||||||||||||||||||| ||||    
T  9199865 agtgatgattaggaaaagaactaaggagaatttaatgcttggatgatggagggaaaatattaggttaa 9199798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 685 - 756
Target Start/End: Complemental strand, 24257774 - 24257703
Alignment:
Q  685 gatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    |||||||| |||||||||| ||||||||||||| |  ||| |||||| ||||||| |||||||||| |||||    
T  24257774 gatggaggaaaaatattaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 756
Target Start/End: Complemental strand, 27067987 - 27067874
Alignment:
Q  643 tgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaact 742  Q
    |||||| ||||| |||||||  | |||||| ||||| | || |||  ||||||||||||||||||||||||||||     |||| |||| ||||||| ||    
T  27067987 tgatgagtaggaaaagcactaaggagaattaaatgcgtttatgatcaagggaaaatattagattaaaattagggtataggatagtttgaccaaacaagct 27067888  T
Q  743 ttagtaagtaagat 756  Q
    |||||||| |||||    
T  27067887 ttagtaagaaagat 27067874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 782 - 811
Target Start/End: Complemental strand, 36225536 - 36225507
Alignment:
Q  782 gctaacttacacccacttaaaaacactaag 811  Q
    ||||||||||||||||||||||||||||||    
T  36225536 gctaacttacacccacttaaaaacactaag 36225507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 687 - 757
Target Start/End: Complemental strand, 42315412 - 42315341
Alignment:
Q  687 tggagggaaaatattagattaa-aattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  42315412 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 42315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 687 - 757
Target Start/End: Original strand, 45244285 - 45244356
Alignment:
Q  687 tggagggaaaatattagattaa-aattagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||| ||||||    
T  45244285 tggagggaaaatattaggttaagaattagggttactaatagcttgaccagacaaactttagtaagaaagata 45244356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 643 - 717
Target Start/End: Complemental strand, 26084016 - 26083942
Alignment:
Q  643 tgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaattagggt 717  Q
    |||||||||||| |||||||  ||||||||||||||||  | ||||||||||||||||||| |||||||||||||    
T  26084016 tgatgattaggaaaagcactaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggt 26083942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 610 - 757
Target Start/End: Complemental strand, 26981181 - 26981034
Alignment:
Q  610 tgtgggaggcaaattttgaatttaaaattacagtgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaa 709  Q
    ||||||||| |||||| || ||| ||  || || ||||||||||| || ||||  | ||||||||||||||| | |||||||| |||||||||| |||||    
T  26981181 tgtgggagggaaatttagattttgaacctatagcgatgattaggaaaaacactaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaa 26981082  T
Q  710 attagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||||||     || |||||| ||||||| |||||||||| ||||||    
T  26981081 attagggtatgatattgcttgatcaaacaagctttagtaagaaagata 26981034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 687 - 756
Target Start/End: Complemental strand, 23828413 - 23828343
Alignment:
Q  687 tggagggaaaatattagattaaaa-ttagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||||||| |||||    
T  23828413 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaacaagctctagtaagaaagat 23828343  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 610 - 717
Target Start/End: Complemental strand, 5334419 - 5334312
Alignment:
Q  610 tgtgggaggcaaattttgaatttaaaattacagtgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaa 709  Q
    ||||||||| |||||| || ||| ||  || |||||||||||||| ||||| |    ||||||||||||||| | |||||||||||||| |||| |||||    
T  5334419 tgtgggagggaaatttagattttcaacctatagtgatgattaggaaaagcattaaagagaatttaatgcttggatgatggagggaaaatcttaggttaaa 5334320  T
Q  710 attagggt 717  Q
    ||||||||    
T  5334319 attagggt 5334312  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 782 - 811
Target Start/End: Original strand, 1565799 - 1565828
Alignment:
Q  782 gctaacttacacccacttaaaaacactaag 811  Q
    ||||||||||||||||||||||||||||||    
T  1565799 gctaacttacacccacttaaaaacactaag 1565828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 687 - 756
Target Start/End: Complemental strand, 37337393 - 37337323
Alignment:
Q  687 tggagggaaaatattagattaaaa-ttagggttactaatagcttgagcaaacaaactttagtaagtaagat 756  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  37337393 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagat 37337323  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 641 - 717
Target Start/End: Complemental strand, 9045238 - 9045162
Alignment:
Q  641 agtgatgattaggataagcacttggaagaatttaatgcttgtaggatggagggaaaatattagattaaaattagggt 717  Q
    |||||||||||||| |||||||  | ||||||||||| ||  | ||||||||||||||||||| |||||||||||||    
T  9045238 agtgatgattaggaaaagcactaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggt 9045162  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 587 - 683
Target Start/End: Original strand, 19557814 - 19557910
Alignment:
Q  587 atgcatcggctgacttcaagatctgtgggaggcaaattttgaatttaaaattacagtgatgattaggataagcacttggaagaatttaatgcttgta 683  Q
    |||||||||| ||||||||||  | ||||||| ||| ||||||||| | |||   |||||||||||||||||||||| ||| |||| ||||||||||    
T  19557814 atgcatcggcagacttcaagagttatgggagggaaaatttgaatttgagatttgtgtgatgattaggataagcacttagaaaaattaaatgcttgta 19557910  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 687 - 757
Target Start/End: Complemental strand, 26110758 - 26110687
Alignment:
Q  687 tggagggaaaatattagattaaaa-ttagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||  ||||||||| ||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagata 26110687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 667 - 713
Target Start/End: Complemental strand, 6698024 - 6697978
Alignment:
Q  667 agaatttaatgcttgtaggatggagggaaaatattagattaaaatta 713  Q
    ||||||||||||||| | ||||||||||||||||||| |||||||||    
T  6698024 agaatttaatgcttgcatgatggagggaaaatattaggttaaaatta 6697978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 669 - 749
Target Start/End: Complemental strand, 31981879 - 31981800
Alignment:
Q  669 aatttaatgcttgtaggatggagggaaaatattagattaaaattagggttactaatagcttgagcaaacaaactttagtaa 749  Q
    |||| |||||||| |||||| |||||||||||||| ||||||||||| | |  ||| |||||| ||||||| |||||||||    
T  31981879 aattaaatgcttg-aggatgtagggaaaatattaggttaaaattaggttgaacaattgcttgatcaaacaagctttagtaa 31981800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 757
Target Start/End: Original strand, 11300764 - 11300835
Alignment:
Q  687 tggagggaaaatattagattaaaa-ttagggttactaatagcttgagcaaacaaactttagtaagtaagata 757  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||| | || ||||  ||||||||| ||||||    
T  11300764 tggagggaaaatattaggttaaaaattagggttacttatagcttcaccagacaagttttagtaagaaagata 11300835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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