View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0084_low_1 (Length: 380)
Name: NF0084_low_1
Description: NF0084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0084_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 16490593 - 16490294
Alignment:
| Q |
1 |
caaaattagaaacagcaaaaataaacaacattaagtaattccaaagacctaataactagtacaagtattgacaattaagagcaatagagccatggttggt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16490593 |
caaaattagaagcagcaaaaataaacaacattaagtaattccaaagacctaataactagtacaagtattgacaattaacagcaatagagccatggttggt |
16490494 |
T |
|
| Q |
101 |
catgttacat-------------ataatgaaatttgcttgcatgtaatgtcttttcagagaatagttagtataagttttaggatgatagtcaatttatat |
187 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16490493 |
catgttacatcaggcatcgtttgataatgaaatttgcttgcatgtaatgtcttttgagagaatagttagtataagttttaggatgatagtcaatttatat |
16490394 |
T |
|
| Q |
188 |
ttatatat--gccaagatcccatgaacactggaaaaaacatacatgtttcagagttctatttcaccaataattttccatacacggataagacggatctta |
285 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16490393 |
ttatatatatgccaacatcccatgaacactggaaaaaacatacatgtttcagagttctatttcaccaataattttccatacacagataagacggatctta |
16490294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 7034383 - 7034443
Alignment:
| Q |
4 |
aattagaaacagcaaaaataaacaacattaagtaattccaaagacctaataactagtacaa |
64 |
Q |
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||||||||||||||| |||||||| || ||||||||||| | | |||| ||||||||||| |
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| T |
7034383 |
aattagaaacagcaagaataaacatcacgaagtaattccagataactaaaaactagtacaa |
7034443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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