View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0085_high_5 (Length: 201)
Name: NF0085_high_5
Description: NF0085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0085_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 33750572 - 33750436
Alignment:
| Q |
52 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacaggtggcacgtctcgggtcacgaatttcag |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33750572 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcag |
33750473 |
T |
|
| Q |
152 |
cagcccatttaccccatggtctttgtctcactcctct |
188 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
33750472 |
cagcccatttaccccatggtctttgtctcactcctct |
33750436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 33719099 - 33718963
Alignment:
| Q |
52 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacaggtggcacgtctcgggtcacgaatttcag |
151 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||| |
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| T |
33719099 |
aactcgatggcggcattgtcataagctctggcagcttcctccgccgtggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcag |
33719000 |
T |
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| Q |
152 |
cagcccatttaccccatggtctttgtctcactcctct |
188 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||| |
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| T |
33718999 |
cagcccattttccccatggtctctgtctcactcctct |
33718963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 33721118 - 33720982
Alignment:
| Q |
52 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacaggtggcacgtctcgggtcacgaatttcag |
151 |
Q |
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| T |
33721118 |
aactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcag |
33721019 |
T |
|
| Q |
152 |
cagcccatttaccccatggtctttgtctcactcctct |
188 |
Q |
| |
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|||||||||| ||||||||||| || ||||||||||| |
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| T |
33721018 |
cagcccattttccccatggtctctgcctcactcctct |
33720982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 33735772 - 33735636
Alignment:
| Q |
52 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacaggtggcacgtctcgggtcacgaatttcag |
151 |
Q |
| |
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||||| || ||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||||||| | |||||||| ||||||||||| |||| |
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| T |
33735772 |
aactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcag |
33735673 |
T |
|
| Q |
152 |
cagcccatttaccccatggtctttgtctcactcctct |
188 |
Q |
| |
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|||||||||| |||||||| || || ||||||||||| |
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| T |
33735672 |
cagcccattttccccatggcctctgcctcactcctct |
33735636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
| Q |
136 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
188 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
6583102 |
gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct |
6583050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
| Q |
136 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
188 |
Q |
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|||||||| |||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
6568943 |
gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct |
6568891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 13409921 - 13409878
Alignment:
| Q |
145 |
atttcagcagcccatttaccccatggtctttgtctcactcctct |
188 |
Q |
| |
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||||| || |||||||| |||||||||||||||||||||||||| |
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| T |
13409921 |
atttctgctgcccattttccccatggtctttgtctcactcctct |
13409878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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