View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0085_low_1 (Length: 621)
Name: NF0085_low_1
Description: NF0085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0085_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 46 - 425
Target Start/End: Complemental strand, 31424182 - 31423810
Alignment:
| Q |
46 |
aacatcagaaaaggaaaaggctcaactcaaaaccacccagactcaagcacccatacacaaaacaaccaaaaggcaccaagagctagcgacgacggataca |
145 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31424182 |
aacatcagaaaaggaaaaggctcaactcaaaaccacccagactcaagcacccatacacaaaacaaccaaaaggcaccaagagctagcgacgatggataca |
31424083 |
T |
|
| Q |
146 |
gacccaagacaaaggcagcctacaacagaaacaccaagagtacactaccatccaccaaaacaccaaaaaacatccacctccctacctaaacaacatcaac |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31424082 |
gacccaagacaaaggcagcctacaacagaaacaccaagagtacactaccatccaccaaaa-------aaacatccacctccctacctaaacaacatcaac |
31423990 |
T |
|
| Q |
246 |
cacccccacttaatcagctcttgtctatcaatcgtatcaatgccaaatcggagtcaaatttatccacgaccaccccatccgaacgctacaaaccatcaca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||| |
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| T |
31423989 |
cacccccacttaatcagctcttgtctatcaatcgtatcaatgccaaatcggagtccaaattatccacaatcaccccatccgaacgctacaaaccatcaca |
31423890 |
T |
|
| Q |
346 |
cacaactacacaaacctacgcaaccatctcgctccaccgctaacagtaccacaccaaacaaccacacaaaaccaacgtga |
425 |
Q |
| |
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||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31423889 |
caccactacacaaacctacacaaccatctcgctccactgctaacagtaccacaccaaacaaccacacaaaaccaacgtga |
31423810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 49 - 265
Target Start/End: Complemental strand, 24712462 - 24712244
Alignment:
| Q |
49 |
atcagaaaaggaaaaggctcaactc-aaaaccacccagactcaagcacccatacacaaaa-caaccaaaaggcaccaagagctagcgacgacggatacag |
146 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||||| ||||||||| ||| |||||||| |||| ||||| ||||||||||||||||||||||||| | |
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|
| T |
24712462 |
atcagagaaggaaaaggctcagctcgaaaaccacccgcactcaagcaaccaaacacaaaatcaactaaaag-caccaagagctagcgacgacggatatgg |
24712364 |
T |
|
| Q |
147 |
acccaaga-caaaggcagcctacaacagaaacaccaagagtacactaccatccaccaaaacaccaa-aaaacatccacctccctacctaaacaacatcaa |
244 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||| |||||||| |||| | |||||||| |||||||||||||||||||||||| ||| || | |
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|
| T |
24712363 |
acccaaaaacaaaggcagcctacaacagaaacaccaagagctcactaccacccacaacaacaccaataaaacatccacctccctacctaaaaaacgtcta |
24712264 |
T |
|
| Q |
245 |
ccacccccacttaatcagctc |
265 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
24712263 |
cca-ccccacttaatcagctc |
24712244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 91 - 276
Target Start/End: Original strand, 31503540 - 31503727
Alignment:
| Q |
91 |
agcacccatacacaaaa-caaccaaaaggcaccaagagctagcgacgacggatacagacccaagacaaaggcagcctacaacagaaacaccaagagtaca |
189 |
Q |
| |
|
|||||||| | |||||| ||||||||| ||| ||||||||||||| | |||||| ||| ||| ||| |||| || |||| ||||||| | |||| || |
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|
| T |
31503540 |
agcacccaaatacaaaagcaaccaaaatgcaacaagagctagcgatggcggatatggactcaaaacagaggcggcaaacaatagaaacatctagagctca |
31503639 |
T |
|
| Q |
190 |
ctaccatccaccaaaacacca-aaaaacatccacctccctacctaaacaacatcaaccacccccacttaatcagctcttgtctatcaa |
276 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||| ||||||||| ||| || |||| |||| |||||||||||| ||| ||||| |
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| T |
31503640 |
ccaccatccaccaaaacaccataaaaacatccaccttcctacctaaccaatgtctaccatcccctgttaatcagctctcgtccatcaa |
31503727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 3679149 - 3679052
Alignment:
| Q |
164 |
cctacaacagaaacaccaagagtacactaccatccaccaaaacaccaaaaaacatccacctccctacctaaacaacatcaaccacccccacttaatca |
261 |
Q |
| |
|
||||||||||||||||||| || ||| |||| |||| |||||| || |||||| |||||||||||||||||||| || ||||||||| |||||||| |
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|
| T |
3679149 |
cctacaacagaaacaccaatagctcaccaccacccacaaaaacatcattaaacattcacctccctacctaaacaacgtctaccaccccctcttaatca |
3679052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 17820059 - 17820158
Alignment:
| Q |
54 |
aaaaggaaaaggctcaactc-aaaaccacccagactcaagcacccatacacaaaa-caaccaaaaggcaccaagagctagcgacgacggatacagaccca |
151 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||| |||||||| |||| |||||||| ||||||||| |||||||||| |||||||||| |||| |||||| |
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|
| T |
17820059 |
aaaaggaaaaggctaagctcgaaaaccacccacactcaagctcccaaacacaaaatcaaccaaaa-gcaccaagagttagcgacgacagatatggaccca |
17820157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 5746519 - 5746424
Alignment:
| Q |
91 |
agcacccatacacaaaacaaccaaaaggcaccaagagctagcgacgacggatacagacccaagacaaaggcagcctacaacagaaacaccaagagt |
186 |
Q |
| |
|
|||||||| ||||||| ||||| ||| ||| |||||||||||||||||||||| || |||| |||||||| | ||||||||||||| |||||| |
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|
| T |
5746519 |
agcacccaaacacaaagcaacccaaacgcaacaagagctagcgacgacggatatggatccaacacaaaggcgatcaacaacagaaacacaaagagt |
5746424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 26386589 - 26386635
Alignment:
| Q |
219 |
ccacctccctacctaaacaacatcaaccacccccacttaatcagctc |
265 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
26386589 |
ccacctccttacctaaacaacatctaccaccccctcttaatcagctc |
26386635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 25658554 - 25658596
Alignment:
| Q |
224 |
tccctacctaaacaacatcaaccacccccacttaatcagctct |
266 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
25658554 |
tccctacctaaataacatcaaccaccccctcttaatcagctct |
25658596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 38639809 - 38639853
Alignment:
| Q |
208 |
ccaaaaaacatccacctccctacctaaacaacatcaaccaccccc |
252 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
38639809 |
ccaacaaacatccacctcctcacctaaacaacaccaaccaccccc |
38639853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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